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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010866 ID=TCONS_00010866|Name=TCONS_00010866|organism=Clytia hemisphaerica|type=transcript|length=3461bpRun BLAST on NCBI protein sequence of TCONS_00010866-protein >TCONS_00010866-protein ID=TCONS_00010866-protein|Name=TCONS_00010866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=821bp MRLFCLIGFWLSLGCVFCRPDLFHENDDDDGYAVCKYGPCLNGGVCTAHPRun BLAST on NCBI transcript from alignment at sc0000118:65458..78770+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010866 ID=TCONS_00010866|Name=TCONS_00010866|organism=Clytia hemisphaerica|type=transcript|length=13313bp|location=Sequence derived from alignment at sc0000118:65458..78770+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000118:65458..78770+ >TCONS_00010866 ID=TCONS_00010866|Name=TCONS_00010866|organism=Clytia hemisphaerica|type=CDS|length=24660bp|location=Sequence derived from alignment at sc0000118:65458..78770+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010866 vs. Swiss-Prot (Human)
Match: FAT4 (Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2) HSP 1 Score: 122.865 bits (307), Expect = 7.794e-28 Identity = 60/169 (35.50%), Postives = 79/169 (46.75%), Query Frame = 3
Query: 234 CKYGPCLNGGVC---------------------TAHP-DKYYCSCLPGWIGTNCERR-NACFPNPCHYG-ICSPNMDGFTCTCKAGFKGNLCNV-LDHCHPNPCHNNGLCTETQHGVQCECSPGFKGRLCEMESKCEPINPCLNGGTCREFVDHYYCACPLSFRGVNCE 665
C +GPC NGG C P + C CLPG+ G+ CE + C P+PCH G C + GF+C+C GF G C ++ C +PC N +C C C G+ G++CE NPC NGG+C+ VD YYC CP G +CE
Sbjct: 3806 CVHGPCQNGGSCLRRLAVSSVLKSRESLPVIIVANEPLQPFLCKCLPGYAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVDSYYCHCPFGVFGKHCE 3974 HSP 2 Score: 85.1149 bits (209), Expect = 2.435e-16 Identity = 42/112 (37.50%), Postives = 54/112 (48.21%), Query Frame = 3
Query: 234 CKYGPCLNGGVCTAHPDKYYCSCLPGWIGTNCERR-NACFPNPCHYGICSPNMDG-FTCTCKAGFKGNLC-NVLDHCHPNPCHNNGLCTETQHGVQCECSPGFKGRLCEMES 560
C PC +GG C + CSC G+ G CER N C +PC G N G F C CK G+ G +C + +++C NPC N G C C C G G+ CE+ S
Sbjct: 3866 CLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVDSYYCHCPFGVFGKHCELNS 3977 The following BLAST results are available for this feature:
BLAST of TCONS_00010866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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