TCONS_00010848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010848
Unique NameTCONS_00010848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010848 ID=TCONS_00010848|Name=TCONS_00010848|organism=Clytia hemisphaerica|type=transcript|length=796bp
CTTAAATAATTTAATGAAAGATGCATCGAATTAAGGTGGTTCGATACAAT
ATTCAGCAACATTCAAATCAAGTGCAcaatttggttgaaaaatatttaat
accAACTTATTACAAACGTTTGGGAATCAGTGAGACAGACAGATCAACGT
ATATGGATTTTGAGGGCTGTTTGGACCCTGGGTATACTCAAAATCAGAAA
TTTCAGGATGCCTCGTATATCGCAATAGAGGAATCCGGACGAATTATTGC
ATGTAATATGAATTATTTCGTCCCTAAAGAAACATTTCAAAAGATCTTTA
TCGATAGTCAGAAATCGGTTTCAGAGGACAACACATTACCGGACACTGTC
CGCAAATACTTCCGACATCGATATGACGTTTGCCACGATCTTATGAAACC
TTTGTATGAGGACCATAAATTAGATACTGTATTGTATCTGGAGAGTGGAA
TAGTTATTCCAGAGTATCGAAGATTAAAACTCAccaataaaattttatca
aaagtttatgCAAGATTTGGTGCAGACTATGGAATCTTTTGTAAAGGCAT
GATACCGAATAAACATGTACTTTCTGGAGAAGTAAATCCCAAATTTATTG
TTCCTGGTGTCGATGGTTTGGACGTGATTAAAAGTTTGCTTTCGTACGAC
GATTATCTAGTTCCCGTTATATTTAGGTCACCTAATCCGTTACCAAAATC
TTCTAAATTATAACTTTCAGAAATTAACTTTACGACCCTATtatcttttt
taagcaaagttATCGAAGTACTTTGTCATATTTTACAAATGAACTT
Run BLAST on NCBI

protein sequence of TCONS_00010848-protein

>TCONS_00010848-protein ID=TCONS_00010848-protein|Name=TCONS_00010848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MHRIKVVRYNIQQHSNQVHNLVEKYLIPTYYKRLGISETDRSTYMDFEGC
LDPGYTQNQKFQDASYIAIEESGRIIACNMNYFVPKETFQKIFIDSQKSV
SEDNTLPDTVRKYFRHRYDVCHDLMKPLYEDHKLDTVLYLESGIVIPEYR
RLKLTNKILSKVYARFGADYGIFCKGMIPNKHVLSGEVNPKFIVPGVDGL
DVIKSLLSYDDYLVPVIFRSPNPLPKSSKL
Run BLAST on NCBI

transcript from alignment at sc0000117:482493..483288

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010848 ID=TCONS_00010848|Name=TCONS_00010848|organism=Clytia hemisphaerica|type=transcript|length=796bp|location=Sequence derived from alignment at sc0000117:482493..483288 (Clytia hemisphaerica)
AAGTTCATTTGTAAAATATGACAAAGTACTTCGATaactttgcttaaaaa
agataATAGGGTCGTAAAGTTAATTTCTGAAAGTTATAATTTAGAAGATT
TTGGTAACGGATTAGGTGACCTAAATATAACGGGAACTAGATAATCGTCG
TACGAAAGCAAACTTTTAATCACGTCCAAACCATCGACACCAGGAACAAT
AAATTTGGGATTTACTTCTCCAGAAAGTACATGTTTATTCGGTATCATGC
CTTTACAAAAGATTCCATAGTCTGCACCAAATCTTGcataaacttttgat
aaaattttattggTGAGTTTTAATCTTCGATACTCTGGAATAACTATTCC
ACTCTCCAGATACAATACAGTATCTAATTTATGGTCCTCATACAAAGGTT
TCATAAGATCGTGGCAAACGTCATATCGATGTCGGAAGTATTTGCGGACA
GTGTCCGGTAATGTGTTGTCCTCTGAAACCGATTTCTGACTATCGATAAA
GATCTTTTGAAATGTTTCTTTAGGGACGAAATAATTCATATTACATGCAA
TAATTCGTCCGGATTCCTCTATTGCGATATACGAGGCATCCTGAAATTTC
TGATTTTGAGTATACCCAGGGTCCAAACAGCCCTCAAAATCCATATACGT
TGATCTGTCTGTCTCACTGATTCCCAAACGTTTGTAATAAGTTggtatta
aatatttttcaaccaaattgTGCACTTGATTTGAATGTTGCTGAATATTG
TATCGAACCACCTTAATTCGATGCATCTTTCATTAAATTATTTAAG

Coding sequence (CDS) from alignment at sc0000117:482493..483288

>TCONS_00010848 ID=TCONS_00010848|Name=TCONS_00010848|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at sc0000117:482493..483288 (Clytia hemisphaerica)
TTATAATTTAGAAGATTTTGGTAACGGATTAGGTGACCTAAATATAACGG
GAACTAGATAATCGTCGTACGAAAGCAAACTTTTAATCACGTCCAAACCA
TCGACACCAGGAACAATAAATTTGGGATTTACTTCTCCAGAAAGTACATG
TTTATTCGGTATCATGCCTTTACAAAAGATTCCATAGTCTGCACCAAATC
TTGcataaacttttgataaaattttattggTGAGTTTTAATCTTCGATAC
TCTGGAATAACTATTCCACTCTCCAGATACAATACAGTATCTAATTTATG
GTCCTCATACAAAGGTTTCATAAGATCGTGGCAAACGTCATATCGATGTC
GGAAGTATTTGCGGACAGTGTCCGGTAATGTGTTGTCCTCTGAAACCGAT
TTCTGACTATCGATAAAGATCTTTTGAAATGTTTCTTTAGGGACGAAATA
ATTCATATTACATGCAATAATTCGTCCGGATTCCTCTATTGCGATATACG
AGGCATCCTGAAATTTCTGATTTTGAGTATACCCAGGGTCCAAACAGCCC
TCAAAATCCATATACGTTGATCTGTCTGTCTCACTGATTCCCAAACGTTT
GTAATAAGTTggtattaaatatttttcaaccaaattgTGCACTTGATTTG
AATGTTGCTGAATATTGTATCGAACCACCTTAATTCGATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006089XLOC_006089Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010848-proteinTCONS_00010848-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010848-exon-sc0000117-1491911889:482493..483288TCONS_00010848-exon-sc0000117-1491911889:482493..483288Clytia hemisphaericaexon
TCONS_00010848-exon-sc0000117-1510915933:482493..483288TCONS_00010848-exon-sc0000117-1510915933:482493..483288Clytia hemisphaericaexon
TCONS_00010848-exon-sc0000117-1575043694:482493..483288TCONS_00010848-exon-sc0000117-1575043694:482493..483288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:482493..483288 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.758826	0.69104	0.587468	0.434526	0.470537	0.439716	0.233112	0.581964	0.152793	0.189258	0.306164	0.161008	0.974006	1.47595	0.912539	1.49956	0.306599	0.378715	0.816797	0.615302	0.463726	0.372711	0.568963	1.41509	0.324454	0.400229	0.248622	0	1.84259	1.65616
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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