TCONS_00010827 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010827
Unique NameTCONS_00010827
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010827 ID=TCONS_00010827|Name=TCONS_00010827|organism=Clytia hemisphaerica|type=transcript|length=751bp
CCACAACGCGATTGCCTTGCACATCGACAAAATGGGATGAAAATTAATGG
TTATTATACAGTCACAATGAATGGATATCGAATGACTCAAGTTTATTGTG
ATCAAACAACTTCAGGAGGCGGTTGGACCGTTATACAAAGACGTATGGAT
GGATCTGTCAATTTCTACAGGACTTGGGAGCAATACaagATCGGGTTCGG
ACAACTTCACCACGAGTTCTGGCAAGGAAACGAAGAAATACACGTCCTTT
GCGCTCAAGCTCTTTACCCAAAAGGCTCCGAGGCTATGATTCAAATCAAA
GTGCAAGGTCTTGATTACCTATTCACAAACCAATACTCGCATTTCGAAGT
CGGCAGTGAAAGAAGTAATTACTTGTTACAGGTGAGCGGGCCGTCTGGTC
ATTGGCATCCGGAATATTTCACCcgatatcaaaacaaagttgaatTTTCG
ACTTGGGATAAGGACAACGACGGAGCTACATCTTACAAATGCGCTTACAC
GCATCAATTTTCTGGTTGGTGGATCAATGGCTCAAAGAATAGTTGTACAA
ATGATGAAGCAGCCAGTCACAATTTGAACGGCCCGTACGATAAATACCGT
ACAAAGAATTGGTATAATCGGATTACCTTTTTCAGTCAAAACCAGCCGTG
GTTCAGTGAAATTAAGGTTCGCCGTAAAATTTAGTATTTAAACTCAAGTg
taaagtttgatttttgaagcaAAAGATATAATGAGAAATCATCAATAAAC
C
Run BLAST on NCBI

transcript from alignment at sc0000117:335909..340698-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010827 ID=TCONS_00010827|Name=TCONS_00010827|organism=Clytia hemisphaerica|type=transcript|length=4790bp|location=Sequence derived from alignment at sc0000117:335909..340698- (Clytia hemisphaerica)
CCACAACGCGATTGCCTTGCACATCGACAAAATGGGATGAAAATTAATGG
TTATTATACAGTCACAATGAATGGATATCGAATGACTCAAGTTTATTGTG
ATCAAACAACTTCAGGAGGCGATTGGACCGTCATTCAAAGACGTATGGAC
GGGTCTGTCAATTTCTATAGAAAATGGAATGCGTATACGGTAAGATTTTT
ACAATGTGACAAATATTTGTAGCACTCATTTTGTCAGTTGATTTTTGAAA
CCCTTCAAGCAAAGTTGCTAGGCAACTTTAAGGAATTGTCCAGAATTGTC
CTGTTTCATAGACTTAATTTATAGACAAATTCTCAAAAGTTCAGTATGTT
TTCAATTTGTTCCCAATCAAAAATGTTATTTTAAAAGGCTGAGGTAAAGA
GACTTCGAATGGTGCCAAAGTTTTGTCTAAAGCCCATTTAAATACCCTCA
ATCGAGATTTGGGGTGATTTGAAGTAAATCGATGAAAAAGTTTCTGTTTT
TTATTGAAAACAAGTGAGCTTTTGGGAGTTTAGGCCTTTGAAAACTATTT
AAGCTTAGGGATAATCTATACTCAAAGTCTTAGGTAAAATGAGAAAAATG
CTTTAATTCTCGATGGTTTAATATTACGTTAGAAATTTTGCCACTTTCGA
TTATTATTTTCTCAGTCTGATGATGACCTAGCCTAAAAATCTAAGCTAGT
TTGATTCAGCCACCAGGATAAATTTGATGGTAAGTTGTGACTGAATAACA
GTGAATGACAGTATTCCAAGGCAAACTTAAAATCCGTAAATATAAAAAAA
TCTTTAAAGCGCCGAAAATGCTATATTGCCATTAGCCGTGTGTCCTAGAC
TTGTGAATACGGGCTTAGTTGACTAGGCTAATGATAACCCTTACTACGAG
GGTCAAAATAACAATTGTATAAAGAACGATCACAATGCAATCATTTTTGT
ATTTTATACCTAGATTGGATTCGGTAAACNATAAAGAACGACCATATACA
ATCATTTTTGTATTTTACATTTCTGTTTTACCTAGATTGGATTCGGTAAA
CTTCATCGTGAGTTTTGGTTTGGTAACGACAACATACACATTCTATCAGC
ACAAGCTGTTCTACCAAAAGGCTCAGAACTCTTGATCCAACTTAAATTCG
AAGGACATGGGGACCGCCTATACATAATCAATATTACGCCCACGTTCAAG
TGGATAGCGAAAGAAGCAATAATTTGATACACTTAAGTGGCGGCACCGGC
GGTTACGCATCATCCTTTGCGACATATCTCAACAAAGTGGAATTTTCGAC
TTTCGACCGAGACCACGATGGGTCACCGTCGAAGAATTGTGCACTTGATT
ATCAATTCTCTGGCTGGTGGCTGAATGGTGCCAAAGATACATGTTTAGAC
ACCAGTCGAAATTTCAACTTGAATGGTCCGTATGATAAATATCGTATGAG
GAATTGGTACGGTAGAATTTCTTGGGACACACCTGATGCCTCTAGGAAAC
CAACCTTCTCAGAAATGAAGATCAGACGATTGCAATAACTGAATTATGTA
ATTACGAGACAATTTTCTGACAATTTTTTCTTTCGTTCGTAGAAAAATAG
AGAATTAAAAACATATGAAAAGTTATCTTTTTATTACAGTGTTCCTGAAG
TGTGTTCAAAATTTTTAAGGATGGAAATGCTTTTTGTATTTGTAAAAAGT
ACCCTATTGTTCGAATCAAAGTATATTCTTGAAACCAACAACGTTCTTCT
CTTTATTTTGGATGAAGATTTATGGATTTATACTGATGAATGAAATCTTT
CTTTATGGCAATACCATATTTCACTTTGGAGTCTCCATAACTCGAACACG
AACGGGGAACACAAATGTGTTCGAGTTAAGGAAACATTCGAGTTATAGAG
GTTCGAATTAAAGAGACTCCACACTGGGAAAAAATAAGAGAATATCTTGA
AAACATGATAATTCCATATACATTAGTACATATGGAAATATGACTTTTCT
ATGTTTCCAAAAGTTTGGAAATACATATTTAATGGTATTTCCAGGATTGA
CATCATATTTCCACCGGTATCGGCACCGTTATGCTTTATCTTTAGGAAGG
TTAAATATTTGTATACCAGGAAAATTTCTAGAGACCTGGTATCTTAAAAG
TTCGAAATTCTTTGTAGTTAACCGTGAGCACGTATCCCCTTTGTTGACAC
CCTAAGCGTACCCACAGAAACATTTTGGCAAAAACTGACAACTTTTTCGA
AAACAATGCATACGTATAACAGAAACCTTTAAAAATTCTTGAAGCCTTCA
GATCGTGTTGTTAACTTTTTGAGATTTAAACCTAGAAATGTTCTTAAAAT
ATTCTTATTTTTACAATTTTTCTTTTTCCTATCTTGTGTGATTTTCTAAG
AAAATGTGAGCCTGTGAAGCCTTAAATTGTTCTTAACATCTTAATATGGG
CCATCGAAGGCTTACGTTCTTATATAGTGTGTCCTTATAAAAAAAGTTAA
TACTTTACAGATCTGATGTGAAGAAGGTTGGGTTCGATGAATCGTAACCC
CACGTTTTCATGTAAATACAGCTGAAATAAAATTGACATTGCAATTGAAA
AACTTTATATGTACATACTTCAAGAGATATACTTCAAAAACGTCCAACGC
ACAAACTTAAAAGAGTTCGAAGGCTGATCAAATAATATAACTAGTGATTT
TCACATGACCAAGCCGACACACAACGTTGTTTTAACGTTTATCTAACGTT
CTAAAGATGAACGTTGAAACAACGTTATGTGCCAGCTGAGGAGTTAAAAG
ATTGCTTCTTCTTCTGTCAACAGGTTTTTTTTAATTCTACGATGGAGCGT
AAAGTATATCCATTTATAGGATATCGTCTTCTAAAAGGCCTCCAACGCAG
ATAGTATATTCTCGGGCATAGAATCGAAAATTGTCAAAAATACTTTTGAT
ACAGATATTTAAAGTATTTCATCTAAGCTGTCCATAAAAGTAGTTTTTAT
ACTATCTTCGAAAAAGAAGATCCATAAATCGCGACTTAGGAGCTGATTCT
TGGAAAAGCGAAATGAAAATCTTTGCGTTTCTATTGGTCATTCTACACTC
AACCACGACCATCTCTGGTGATAATACAGCTGATATTCAACAACTGAAGA
GTAATTTCCTTCTCCTACTCAACAACTACAGGGACATCCATAAAAAATAT
AGTACATTGCAGTCAAAGTACACTGACTTAGAGAAGAGTGTTAATCTAAA
AGCATCTTATTGCCAGCTTAAGGCTCAAGGCCAATGTGGAGACTGTGTTT
GCAGAGATGACTTAACACTCACCAAGAAATATTACTGTGATTGCCGGAAC
CAATCACCACAACGCGATTGCCTTGCACATCGACAAAATGGGATGAAAAT
TGATGGTTATTATACAGTCACAATGAATGGATATCGAACGACTCTAGTTT
ATTGTGATCAAACAACTTTGGGAGGCGGTTGGACCGTTATACAAAGACGT
ATGGATGGATCTGTCAATTTCTACAGGACTTGGGAGCAATACAAGGTAAT
TTTTCTTTTCATAATACGTTTTCTTTTTTTAAAGATTAAACTTGATTATT
TATCAATCTAGGTAAACAGGAAAGACAACCTCTTTCTCGATATCGAACTT
AATCGAGCTTAGTCACAAAGAACCATCGGATGGGGGGCACTTGATTCAAA
AACAACCATGCATAGAAAATCTAGTCAAATTTGTGTAAATTCGGGCGAAA
AATCGACGGGACCATTAAGGACCGCACGTACGGTCGGTTGTTTACCTTGA
GTGCCCACTCCCACCCGGGAAAAAAAGAATAAAAAGATGACTACTGATGT
TAATGTATCGTGTTCTCTTTATCTCGAACTTTCTCAATATACAGCTATAC
TATTCAATTTGGAGGTTCTTTTTAACTGAAGCAGCCAGAATAATTGTCCT
AATTATAGAGACTCATAGAGACACACACTGTAAGGTTATAACATAAGGAG
CGATGACCAAGTGGTCAAAGGCGTCAGCGTCTCAAACCAGGGATTCGTAG
TTCGAATCCCCGCTCCTTCCAATGTTCCGTTCAGTTCATAGATAGCCGAG
CCGGCTGGCTGTGGACCCCGTGAAAACAATCGAAAGACTGTCTAAAAATC
ATAGATTACTGGGATATCCAAGTAAAATATCGTTTCTATCTATCTACCTT
AAATTGTATTATTTTTTAATATTGGCAGATCGGGTTCGGACAACTTCACC
ACGAGTTCTGGCAAGGAAACGAAGAAATACACGTCCTTTGCGCTCAAGCT
CTTTACCCAAAAGGCTCCGAGGCTATGATTCAAATCAAAGTGCAAGGTCT
TGATTACCTATTCACAAACCAATACTCGCATTTCGAAGTCGGCAGTGAAA
GAAGTAATTACTTGTTACAGGTGAGCGGGCCGTCTGGTCATTGGCATCCG
GAATATTTCACCCGATATCAAAACAAAGTTGAATTTTCGACTTGGGATAA
GGACAACGACGGAGCTACATCTTACAAATGCGCTTACACGCATCAATTTT
CTGGTTGGTGGATCAATGGCTCAAAGAATAGTTGTACAAATGATGAAGCA
GCCAGTCACAATTTGAACGGCCCGTACGATAAATACCGTACAAAGAATTG
GTATAATCGGATTACCTTTTTCAGTCAAAACCAGCCGTGGTTCAGTGAAA
TTAAGGTTCGCCGTAAAATTTAGTATTTAAACTCAAGTGTAAAGTTTGAT
TTTTGAAGCAAAAGATATAATGAGAAATCATCAATAAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006072XLOC_006072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010827-exon-sc0000117-1575043694:340581..340698TCONS_00010827-exon-sc0000117-1575043694:340581..340698Clytia hemisphaericaexon
TCONS_00010827-exon-sc0000117-1575043694:337154..337224TCONS_00010827-exon-sc0000117-1575043694:337154..337224Clytia hemisphaericaexon
TCONS_00010827-exon-sc0000117-1575043694:335909..336470TCONS_00010827-exon-sc0000117-1575043694:335909..336470Clytia hemisphaericaexon
TCONS_00010827-exon-sc0000117-1510915933:340581..340698TCONS_00010827-exon-sc0000117-1510915933:340581..340698Clytia hemisphaericaexon
TCONS_00010827-exon-sc0000117-1510915933:337154..337224TCONS_00010827-exon-sc0000117-1510915933:337154..337224Clytia hemisphaericaexon
TCONS_00010827-exon-sc0000117-1510915933:335909..336470TCONS_00010827-exon-sc0000117-1510915933:335909..336470Clytia hemisphaericaexon
TCONS_00010827-exon-sc0000117-1491911889:340581..340698TCONS_00010827-exon-sc0000117-1491911889:340581..340698Clytia hemisphaericaexon
TCONS_00010827-exon-sc0000117-1491911889:337154..337224TCONS_00010827-exon-sc0000117-1491911889:337154..337224Clytia hemisphaericaexon
TCONS_00010827-exon-sc0000117-1491911889:335909..336470TCONS_00010827-exon-sc0000117-1491911889:335909..336470Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:335909..340698 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.358857	0	0	0.139508	0	0	0	0.136648	0	0	0.95231	3.33462	7.61289	12.138	1.49374	1.85357	6.79722	8.19324	1.90231	1.60459	5.45555	2.86756	0	0	0	0	18.2068	17.5568
Blast
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BLAST of TCONS_00010827 vs. Swiss-Prot (Human)
Match: ANGL7 (Angiopoietin-related protein 7 OS=Homo sapiens GN=ANGPTL7 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.205e-29
Identity = 76/199 (38.19%), Postives = 106/199 (53.27%), Query Frame = 1 
Query:   10 DCLAHRQNGMKINGYYTVTMN---GYRMTQVYCDQTTSGGGWTVIQRRMDGSVNFYRTWEQYKIGFGQLHHEFWQGNEEIHVLCAQALYPKGSEAMIQIKVQGLDY---LFTNQYSHFEVGSERSNYLLQVSGPSGHWHPEYFTRYQNKVEFSTWDKDNDGATSYKCAYTHQFSGWWINGSKNSCTNDEAASHNLNGPY 588
            DC +  Q   +I+G Y +  +   G    +V+CD  TSGGGWT+IQRR  G V+FYR W+QYK GFG +  +FW GNE IH L  Q           +++V+  D+   L   +YSHF +G+E ++Y L +   +G+   +   +Y N   FST DKDND     KCA   +   W+     N CT+      NLNG Y
Sbjct:  130 DCSSLYQKNYRISGVYKLPPDDFLGSPELEVFCDMETSGGGWTIIQRRKSGLVSFYRDWKQYKQGFGSIRGDFWLGNEHIHRLSRQP---------TRLRVEMEDWEGNLRYAEYSHFVLGNELNSYRLFLGNYTGNVGNDAL-QYHNNTAFSTKDKDNDNCLD-KCAQLRKGGYWY-----NCCTDS-----NLNGVY 307
The following BLAST results are available for this feature:
BLAST of TCONS_00010827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGL72.205e-2938.19Angiopoietin-related protein 7 OS=Homo sapiens GN=... [more]
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