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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000995 ID=TCONS_00000995|Name=TCONS_00000995|organism=Clytia hemisphaerica|type=transcript|length=1980bpRun BLAST on NCBI transcript from alignment at sc0000007:405053..423361+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000995 ID=TCONS_00000995|Name=TCONS_00000995|organism=Clytia hemisphaerica|type=transcript|length=18309bp|location=Sequence derived from alignment at sc0000007:405053..423361+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000995 vs. Swiss-Prot (Human)
Match: SYHC (Histidine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=HARS PE=1 SV=2) HSP 1 Score: 504.212 bits (1297), Expect = 1.020e-171 Identity = 244/394 (61.93%), Postives = 308/394 (78.17%), Query Frame = 1
Query: 730 D*QVPFARYVAMNKVEKIKRYHIARVYRRDNPAMTRGRYREFYQCDYDVAGQYDPLIPDAECVKIVAEILLKLELGDFVIKVNHRKVLDGIFAISGVPECQFRTICSSVDKLDKTPWEEVRNEMVKEKGLSEDIADKIYEYVQYKGGPELIEKLLNDEKFTNNKSAKEGVEDMKLLFKYCELFGCLQNVSFDLSLARGLDYYTGVIYEAVLTGLPKELMNXXXXXXXXXXXXXXXXQVGVGSVAGGGRYDDLVGMFDSKGKKVPCVGVSLGIERIFSIMEKKQELSEEKARITKTKVLVVSGQKKMLEERLKLVNELWSQNIEAEVTFKANPKLLNQFQYCEDNAIPLCAVIGDSELEKGVVMLRNMKTREQNEVKRDELAEEIRK-----LCV 1896
D VPFARY+AMNK+ IKRYHIA+VYRRDNPAMTRGRYREFYQCD+D+AG +DP+IPDAEC+KI+ EIL L++GDF++KVN R++LDG+FAI GV + +FRTICSSVDKLDK WEEV+NEMV EKGL+ ++AD+I +YVQ GG L+E+LL D K + NK A EG+ D+KLLF+Y LFG +SFDLSLARGLDYYTGVIYEAVL P + +E +GVGSVA GGRYD LVGMFD KG+KVPCVG+S+G+ERIFSI+E++ E EEK R T+T+VLV S QKK+LEERLKLV+ELW I+AE+ +K NPKLLNQ QYCE+ IPL A+IG+ EL+ GV+ LR++ +RE+ +V+R++L EEI++ LC+
Sbjct: 130 DLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQ---------------AGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQPLCI 508 HSP 2 Score: 177.948 bits (450), Expect = 3.750e-48 Identity = 92/137 (67.15%), Postives = 110/137 (80.29%), Query Frame = 1
Query: 91 KRVALQEKIKEQGEVVRKLKSSKDQTDEIKQQIKDEVAKLLELKAQLGGNNTKKKFVLKTPKGTRDYGPKQMAIREKVFKIITETFQKHGAVEINTPVMELKETLTGKYGEDSKLIYDLKDQGGEILALRYDLTV*F 501
+R AL+E +K QGE VR LK K + I++EVAKLL+LKAQLG + +K+KFVLKTPKGTRDY P+QMA+REKVF +I F++HGA I+TPV ELKETL GKYGEDSKLIYDLKDQGGE+L+LRYDLTV F
Sbjct: 3 ERAALEELVKLQGERVRGLKQQKASA----ELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPF 135 The following BLAST results are available for this feature:
BLAST of TCONS_00000995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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