TCONS_00010279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010279
Unique NameTCONS_00010279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010279 ID=TCONS_00010279|Name=TCONS_00010279|organism=Clytia hemisphaerica|type=transcript|length=1282bp
CCAGAACGGTGAATTATGAGGCGATTGGAAAGTTTGTCGACCATTTGGTA
CAAACTGGAGTTAACGGAGTGTTTGTATCTGGAACAACAGGTGAATTCAC
CAGTCTATCCATGAGCGAAcgaaaaatgattgctgaagcATGGCTCAAGT
TTGGAAAAGATAAGTTGGACATGATCATTATACAGTGCGGTTCATCTTGC
ATGGATGAAACTAAAGAGATGGTTCGTCATGCAAAGGAGAATGGAGCAGA
TGCAGTGGCTTGTATTTCACCAAGTTTCCTCAAACCTATGAATGAAGAAT
ATTTATCAGATTACTTGGAAGAGGTGGCATCAGAAGCACCCAATACACCT
TTCATGTACTATCACCTCCCATCCTTCACTGGTGTCAAAGTGGACATGTC
AAAACTGATGTCATTATGTTATGAGAAGATTGAAACATTTGCAGGATTGA
AATGCTCTTCAGAAAATATGTACGAAATGATTGTTCCTCTTAAATTCAAA
CCCAAACCTCTCAAAGTATTCTATGGATTTGATTGGCAATTTCTCGGTGG
CCTTGCAATGGGTGCTGACTGTGCAGTTTGCACGAGCTTTAACTTCATTG
GTAATAAATTTGTAGAAATCACAAAAGCTTATAAAAATGGAAACATGAAA
GAAGCACAATCTATACAGcacAAAATTGCATTGGATTTTAATCCTTTCTG
TTCTAAATATCATGGTGTGGCATTTGCAAAAATCGCAACCACTTTGATTT
CTGGTATTGATATGGGTCAACCAAGACGCCCTTTGCATCAGTTCAGTGAA
AAGCAAATCAAAGAAATCAAAGCATTTCTAACGAAGGAAGGATACCTCAA
AAAATGAGTGGACTTCCAcaggaaaaatgaaattcatcGGCTTGGATTCA
TCATATGCGATAATTCAAGGACAAAATTTACAGTCGTCGTTTATTTACaa
tgaaaaactgttttttattacttttttagaATATAGTGATTTCTTAGATA
ATTTTGTAAGTATTTGATCTCTTAATAtttagaattgaaaaatcttattt
GAAATCAGTGTAACCACAAACTCAATACATATTCTTTAGCTGAAATAGAG
ACATAGAGACATAGTAAAAGACACTAGAATCGGGATTGGATGTGTGTTAC
TGGAAAAAGTCTGGGGCTACGAATTTTGAACTTTCTAGTTTTGGATGTAA
ATGATCAATTCAAACACCTCCTTCTCCcagacctggtaggatttttcaTC
CAGTGGgtttaaaaataacggactgaaactcg
Run BLAST on NCBI

transcript from alignment at sc0000104:579628..594673+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010279 ID=TCONS_00010279|Name=TCONS_00010279|organism=Clytia hemisphaerica|type=transcript|length=15046bp|location=Sequence derived from alignment at sc0000104:579628..594673+ (Clytia hemisphaerica)
CCAGAACGGTGAATTATGAGGCGATTGGAAAGTTTGTCGACCATTTGGTA
CAAACTGGAGTTAACGGAGTGTTTGGTAAGAGCTTTGGTGTAAAAAACTA
TACAACCCATCGTTTAGTGGGCATacaagcccgggggggggcttgcactt
aggcaaaattaagtacggggacgtgctgctgatcagggtccctttttcag
acTCTAGAGATATCTGATAGGGTCCCAagtttactaattttcaagatgtg
gcCATTTCTGTGGTCAACCTTCCGACTTATCGAGCAATATTTCTAAAGTT
TGATAAAGTTTAACCcttaaacgggggggggggattcACTAAGGTTTAAT
CAAGGTTTTCCTTGTGTGagctaaaaaaaatctaaaatagactgggttct
aataagaTTAATAACGAAAAAGGAGATGTTTCTTACCCAGACggtgtgac
attcataacgtccaaataacgttatttgaacgttaaaacaacgttgtgtg
ccagctgggtaggcTTCTGTGGCTCTACTACATACTGAATCATCCGTCCT
TTCCACTATTTGCATTTTAGTATCTGGAACAACAGGTGAATTCACCAGTC
TATCCATGAGCGAAcgaaaaatgattgctgaagcATGGCTCAAGTTTGGA
AAAGATAAGTACGTTATTGCCCCGTTCTCCTGTCTGACTTTTAAgcacac
ccctttctcacagacccactaggaaCCCATCTCattgaaaaattggccaa
aatactgcccggtggaaaattatactcaaaattttccccactgaaaataa
tcaaataaaacaatccTCAATgcaaatattatgctatttttcccatcccc
actatattttctgacttaaaaacaatggaattcaaatccccagccaaaaa
aaatatggaagtctcaatccccatcgagtttcagttcgttatAATTACCC
CCACtagctgaaaaaatcccactgggtctgtgagaaggctCGGTATCAGT
TAGAAAGGTTTATTAAANtttgtcttcagaggttactattttctttgaaa
acttaacctctgatactcagggtaccaaTTCCCctttatgaaaattttct
aCAAAAGTTTCGGAGGTATATTTGGACGATAAAACCATCATCAATtaaaa
gctgataaaatttagcgttcaaaattttttataaagttcCAAATTTTTTA
gctgcttgttttttttttattatctgaTTCCAGAACGGTGAATTATGAGG
CGATTGGAAAGTTTGTCGACCATTTGGTGCAGACTGGAGTTAACGGAGTG
TTTGGTAAGAGCTTTGGTGTAAAAAACTATACAACCCATCGTTTAGTGGG
CATacaagcccgggggggggcttgcacttaggcaaaattaagtacgggga
cgtgctgctgatcagggtccctttttcagacTCTAGAGATATCTGATAGG
GTCCCAagtttactaattttcaagatgtggcCATTTCTGTGGTCAACCTT
CCGACTTATCGAGCAATATTTCTAAAGTTTGATAAAGTTTAACCcttaaa
cggggggggggggttcactAAGGTTTAATCAAGGTTTTCCTTGTGTGagc
taaaaaaaatctaaaatagactgggttctaataagaTTAATAATGAAAAA
GGAGATGTTTCTTACCCAGACggtgtgacattcataacgtccaaataacg
ttatttgaacgttaaaacaacgttgtgtgccagctgggtaggcTTCTGTG
GCTCTACTACATACTGAATCATCCGTCCTTTCCACTATTTGCATTTTAGT
ATCTGGAACAACAGGTGAATTCACCAGTCTATCCATGAGCGAAcgaaaaa
tgattgctgaagcATGGCTCAAGTTTGGAAAAGATAAGTACGTTATTGCC
CCCTTCTCCTGTCTGACTTTTAAgcacacccctttctcacagacccacta
ggaaCCCGTCTCattgaaaaattggccaaaatactgcccggtggaaaatt
atactcaaaTTTTtcccccactgaaaataatcaaataaaacaatccTCAA
Tgcaaatattatgctatttttcccatctccactatattttctgacttaaa
aacaatggaattcaaatccccagccaaaaaaaatatggaagtctcaatcc
ccatcgagtttcagagTTTTCCCTCATCCCGAAACAATTTTAATCACAGA
CTCAGAATCGTCAGTAATCTAAGCGTTAACATGGACGATACATAGATTTT
TATCCTTACTCTCAAAGGCTGACAAATTTCTTCCTTGTCAATAAGAAAga
gatgtttttgatgtttttaaattaTATGTGAGTACATGAGAGTCTGAGCA
AAGTGTATATTGTTTTacccacagatttataaagcccagaGGGCTAGATA
TCGTGTTTTAAGCCATCGctggcaaaaaaagtgaatatcgcaagaaATAT
AGTTTCTACTGTTTCTGAAAATCCTCGAAGCtcctgaaattctattgtaa
ttttTAGGTTGGACATGATCATTATACAGTGCGGTTCATCTTGCATGGAT
GAAACTAAAGAGATGGTAGGTCTTTTATCAAAAGCTTGAGGGATGTGCGT
TATCCACCACTGAGCTTTATACTTTATACACCTTAGTACCGGCCAACCAA
TACTTATCttttatttgagattttttgaaagtggtaacCTAATGGTAGCA
ATAATCAATTGTGGTGTGTATGCAGCAAGAGCGctatatatctttttttt
ggATACTTGTGATGTAGCCCCGTTGGATGTTATGAAAAGTTTTGACACTG
CAACTGTTTCTTTACGGGtaatcaaagatggcgggtaAAGTGAAGGATTT
TTCTTATTATCATCACCCAGGTTCGTCATGCAAAGGAGAATGGAGCAGAT
GCAGTGGCTTGTATTTCACCAAGTTTCCTCAAACCTATGAATGAAGGTAA
ATGGCGGCACTAGTTTATGCTTTATTATAGTCGACCACCCCCATCCTAGA
TAAACCCCCttcgaaaaagttgaataaaGAGTTCGATATTTTATGGCATA
ATGATTTTTTATgtgtaaaagagaaaaaaactaaatttgaaaTGGCTGAC
GATTTGATAAAGTTGAAACTTCAAGTACTATCATATTTCAAACTGTTATT
TTTTCTCGTACACGTTATGCAGCTCTGATCATCGAGCATAATTTGATAAA
GTCTATCTGTTACTATCGCAAAAATGGTTTAGACTTGCCAAATATNNNNN
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NNNNNNNNNNNNTTGGGACGATAAAACCATCATCAATtaaaagctgataa
aatttagcgttcaaaattttttataaagttcCAAATTTTTTAGCTGCttg
gtttttttttattatctgaTTCCAGAACGGTGAATTATGAGGCGATTGGA
AAGTTTGTCGACCATTTGGTACAAACTGGAGTTAACGGAGTGTTTGGTAA
GAGCTTTGGTGTAAAAAACTATACAACCCATCGTTTAGTGGGCATacaag
cccgggggggggcttgcacttaggcaaaattaagtacggggacgtgctgc
tgatcagggtccctttttcagacTCTAGAGATATCTGATAGGGTCCCAag
tttactaattttcaagatgtggcCATTTCTGTGGTCAACCTTCCGACTTA
TCGAGCAATATTTCTAAAGTTTGATAAAGTTTAACCcttaaacggggggg
ggggattcACTAAGGTTTAATCAAGGTTTTCCTTGTGTGagctaaaaaaa
atctaaaatagactgggttctaataagaTTAATAACGAAAAAGGAGATGT
TTCTTACCCAGACggtgtgacattcataacgtccaaataacgttatttga
acgttaaaacaacgttgtgtgccagctgggtaggcTTCTGTGGCTCTACT
ACATACTGAATCATCCGTCCTTTCCACTATTTGCATTTTAGTATCTGGAA
CAACAGGTGAATTCACCAGTCTATCCATGAGCGAAcgaaaaatgattgct
gaagcATGGCTCAAGTTTGGAAAAGATAAGTACGTTATTGCCCCGTTCTC
CTGTCTGACTTTTAAgcacacccctttctcacagacccactaggaaCCCA
TCTCattgaaaaattggccaaaatactgcccggtggaaaattatactcaa
aattttccccactgaaaataatcaaataaaacaatccTCAATgcaaatat
tatgctatttttcccatccccactatattttctgacttaaaaacaatgga
attcaaatccccagccaaaaaaaatatggaagtctcaatccccatcgagt
ttcagttcgttatAATTACCCCCACtagctgaaaaaatcccactgggtct
gtgagaaggctCGGTATCAGTTAGAAAGGTTTATTAAAAGAGTTTTCCCT
CATCCCGAAACAATTTTAATCACAGACTCAGAATCGTCAGTAATCTAAGC
GTTAACATGGACGATACATAGATTTTTATCCTTACTCTCAAAGGCTGACA
AATTTCTTCCTTGTCAATAAGAAAGAGATGTTTCTGATGTTTTATGTGAG
TACATGAGAGTCTGAGCAAAGTGTATATTGTTTTacccacagatttataa
agcccaggACTAGATATCGTGTTTTAAGGCATCGctggcaaaaaaagtga
atatcgcaagaTATATAGTTTCTACTGTTTCTGAAAATCCTCGAAGCtcc
tgattggtcaagcgctgaaattctattgtaattttCAGGTTGGACATGAT
CATTATACAGTGCGGTTCATCTTGCATGGATGAAACTAAAGAGATGGTAG
GTCTTTTATCAAAAGCTTGAGGGATGTGCGTTATCCACCACTGAGCTTTA
TACTTTATACACCTTAGTACCGGCTTTGGTACCGGCCAACCAATACTTAT
CttttatttgagattttttgaaagtggtaacCTAATGGTAGCAATAATCA
ATTGTGGTGTGTATGCAGCAAGAGCGctatatatcttttttttggATACT
TGTGATGTAGCCCCGTTGGATGTTATGAAAAGTTTTGACACTGCAACTGT
TTCTTTACGGGtaatcaaagatggcgggtaAAGTGAAGGATTTTTCTTAT
TATCATCACCCAGGTTCGTCATGCAAAGGAGAATGGAGCAGATGCAGTGG
CTTGTATTTCACCAAGTTTCCTCAAACCTATGAATGAAGGTAAATGGCGG
CACTAGTTTATGCTTTATTATAGTCGACCACCCCCATCCTAGATAAACCC
CCttcgaaaaagttgaataaaGAGTTCGATATTTTATGGCATAATGATTT
TTTATgtgtaaaagagaaaaaaactaaatttgaaaTGGCTGACGATTTGA
TAAAGTTGAAACTTCAAGTACTATCATATTTCAAACTGTTATTTTTTCTC
GTACACGTTATGCAGCTCTGATCATCGAGCATAATTTGATAAAGTCTATC
TGTTACTATCGCAAAAATGGTTTAGACTTGCCAAATATATAATGCTAGCT
ACACTTATCATCGATTTTGAGAGCTATCTTCATTAGCTGACACCAAACGT
AAACAAAAAATGATGTAGAAGTTCTCCAACGTATTTAACTTATTTGTTTT
GTCACATAGAATATTTATCAGATTACTTGGAAGAGGTGGCATCAGAAGCA
CCCAATACACCTTTCATGTACTATCACCTCCCATCCTTCACTGGTGTCAA
AGGTGAGTGGTTCCTCTATTGCCCCATGTATCTAGTCTACAGCCTAGACT
GGACAATGTCAGTTGATAAGCCTTCAAAGGCGAAACAAAAAGTATATAta
ccattgagtttgaagctcCGAAGAAGCTagaaaggaatcttcaacctttc
tcaaccagaaaaagtgaagccttcaAGATTTTCCCCGCATTTAGAAAACC
ACCATACAAAAACCGCGAATTTAGCCTAGGATAAGGAAAATGGcatcatt
tcccatccaggagttacGTAACTAACCCCTTTGGGGCTGTGGAAACAATG
ATCTTTATACCTGTCAAGTAACTTCGAAATAAATGAGTTTTTGTTCAATA
CTTGTagcaaagtcgatatttttGCATGATATAATCTGCCTAGCTCCCAG
TTCAGCTTGTAGAAAGATAACATAGCACAAATTGAGGCCGGGATTGAGGC
CAATGAATCAAGTTGTCTACCAACAgttattaaaaacaaaatttactgcA
ATAATCCAGAAAATAACTTGCTCAAATTGGAATAGGAAAGCTTATCTTGA
Tactttaatacaataatgaccggttagtgagggctgtactgagaaatatt
gcccgaggtcaagtaacgaccgagcttgcgaggttgttgcgttgaccgag
ggcaatattttcagtacagcccgaaaaaaaccggtcattattgtatttgt
taacagtttccttcagcttcgattgatttttagcacttttaccaggaaaa
atagcgaaataaagtgaaaaatacaagcgaaaagagatcaaaaattttta
taatttctgacgtcagaaataaaaaatgagagaaatgatgtcaacgcatt
gttcattttcctttgaaaaagtgacgtcacaatgaattttccNNNNNNNN
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NNNNNNNNNNNNgacaatgtaggcccgtcgtcatgcgaaaagaaccaatt
gcattgcgcaaaaagtcatgtagcccgcttcgaaaaagtaaccggttaac
aattcTCCTTATTACTCTCAGGCGAAGCCAaactatttgtttttttctaa
ttgTTAGACAATCGAGCATGACTTTTACTTAGCATTCAACGTGGaacctg
tttttttttcagccatttttttcaaattgaaattgacaaaatcaaagaaa
atgtcaaatagAATCCTTTCATCCCAAGGTCGTGAATAGACAGGGCGAAA
ATCGGGCCGtttaaactagagctaagagatttatttttattttacctaaC
TCGCTTTAGTGGACATGTCAAAACTGATGTCATTATGTTATGAGAAGATT
GAAACATTTGCAGGATTGAAATGCTCTTCAGAAAATATGTACGAAATGAT
TGTTCCTCTTAAATTCAAACCCAAACCTCTCAAAGTATTCTATGGATTTG
ATTGGGTAAGAAACTATTTCATGTGAACATttcaattgttaaaaaaatat
tttattgtcgTCACTCGTTCAATCGTCAAAGTCAGATTCGATTTCTTCAG
GGGATTAAGGtggggtcaaaatgcttgcaacgttacatAAATCATTTCTA
GAAGCTCATTTTGGACTCAaattgcgaattacgcaaaatttctaaatcaa
aATACATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNctcacagcttgaaacgtcataacgacttataat
tagcaattaagtggaagaatctgactctcacaggaaagttttaagtctct
tttgagaattggatgagtgattttcgataagaaatgcaataaaaatggtt
cgaaaaatcatttaatgagggaaggagagtgaacaataatatcattactg
cggacatagctagaacataagaaatcggcaaaaatctggttacttgtata
tccagtgtataataaatccttgatctaaccaaacgacgtttgatagcttg
attttctttatgatgaaccatttagatgaacccatagtctgcagctgggt
tagaaaattttctttttttcacccagccggtttccggaaacactacattt
tcaTCTTACCCAAATATTTTCTCTTAATTCTTCATTTCAGCAATTTCTCG
GTGGCCTTGCAATGGGTGCTGACTGTGCAGTTTGCACGTAAGTTGTATAT
CTTCAGCACTTATTAActcagctgacacacaacgttcttttaatgtttat
ctaacgttcacaacgtccacatGATGTTAGAtcaacgttgaaataacgtt
atgtgccagctgggaagatTTTTACAATATGAGGGTTATGTATTGTCGAA
AGTGTGAATTTAAGTTGATGAGTACTTATGGCCTGTCCTAGATACCTGGG
GAGAGCACTAAATTCAAAAACGACCCGTACGTGCGGCCCGAATTTAAGTC
TTTGAAATCGAATTCTTACAGTGCCGAcaaaatttaacaaattttgggta
aatttgaGCGAAAAGTCGACCCCTTAcgatgcattttcttgaaagttttt
gctcagattttccaaattttacacccttagactacactttttctcatctt
cactCATTTCgatccttacagtgcactttggaaAGCTTGGAAAAGGACCC
TTAAAGGCGATCGGTAGATCGTTTACCTAATGCCCCCACCCCGGGCCAAG
ATACTCGAAGTTTTCAACTTTGTTAAAACATTGATTACGAGTTTGAAAAT
TAACAGCTCTATTTAAGTTGCAGAAGAATATGCCCTTACAGTGTAGctct
tgagcagtgaaaaggtatccttacagtgcattttaccgaacgtttctgaC
GTTTCTGAAGCAACCTGAAANagtgaaaaggtacccttacagtgcatttt
accgaacgtttctgaCGTTTCTGAAGCAACCGGAACATGAGCCTGAGATG
TCAGACAACTTTCAAACAAATCAAGTTGTGTGCATGTCAAAACCATAAAG
ATatatcagatttttactgtcagacgtgcaattcagcagtccccaaacac
acccttaaAGTGTATCAagctaaaagaaaacttttgtagTGCATTCTATC
AAAAGAACACCATTAGAGTGCATTTCGAGGATCTCGATAAGGGCGTGCAC
ATGCCGtaggtcggaccatatgagtccCCCGGGCATGTAGAGTACAATGC
TTGATTTGATCTTTCCTTCCTTAGGAGCTTTAACTTCATTGGTAATAAAT
TTGTAGAAATCACAAAAGCTTATAAAAATGGAAACATGAAAGAAGCACAA
TCTATACAGGTAATCTTTTCCTAACCCGAATTTCCATCCCAATTAGTTGG
AAAATACACCCAGTCCCAGTAATAGGGAAATAGTTTAGGAGGtggggaaa
atttgaaaatagtgGTTGGCCCAGGGCGGAGTAAGTAGTtgcggaggtgt
ttacagtgtcCCAAACTCTACCACCACTTTTTTTTATCCGTAAACGGTCT
GACCACAgtgttatttttttacttttaaacgaaagcgaaagcgactgaGT
TCTGATGTTTACGTATATGATTTACGTTTTAATTTGGTGAGATTGTTATG
CAAATCACCGCACTCAATACAATATTCATCCAAAATCTGAATAAAAAACG
ATCAGATTGGCGTAGCAACCCAATAGCGTAGACAAGAagacgcaaaattt
gtgtaggatagcagatttttatgacacagcaatcatctttttatattata
aatagataattacagtgtcataaaattCTGCTTTCTTACACAAATTTTGA
gaccctcctgtctacgctactgccaACCCGGGTAGATTCTTTTACGGAGG
CATTATCTTTGGAGTGAATACGTGCCGTAAGCAGGGTATCAGAATCTGCT
CTATTGCAAACAGTAGACTTCAAAATCCCCCTGAAAGCAAGCCAATCGCT
TGTTTCTTTTCCTGCAGGTAAAACTCTACAACAGGTCTCAAAGACAATTG
TTGGCCTTATCCCAGTTGATACAATCAAGAGTAGAAATACTTTAAAGGAC
TTATGTTCACCAAATtcaatttaaaattcaaaatgttttatttttcagca
cAAAATTGCATTGGATTTTAATCCTTTCTGTTCTAAATATCATGGTAaga
tttgtcgttctttatgaaatttgtcgttctttttgtctttttttaagtAA
GGCGAGAATAAATTATAACTCccttagtaaataatgactctCCAAAACCC
TTTTTCTAAAGAGGTAGGGAGTTAAAAAACTAGTTGGATAAGACTCCCCT
CCTCAAATGTCAAgcaaaagaagtcattgtattgcATTGCATTAACCCTA
ACTAACCCTAACACACTGCATTCGCAAATCTGGGAAACAGAGTCTTTAGA
ATTAAAGgtttaatttggaaattttgtagATATCCTAATTATTTGTTACT
TTTGTACCTTTCTTTGTTGTTAATTTCCAACAATATTACAAAAGCTTGAC
TATATTAACCTGATCAATATATTGTGCCCCTTTTTTCGATTCACTACCCT
TTGTTGCCGAAGTCATCACAAATTTACATTGTAAGATTCCGAACTTCAGA
CTTATACTGAAAATGGATCACTTCACCTTTCCCAACGTATGGTTTGTTAT
TGTACATGGCGTTGTAAATTCACCATTTtattgtttatgatttttcatCG
AATTTGCCCTTCAAACGAATGATTGAGAAATGTTTTCGAATACAACGAAC
TGATATTGAATTAATACAAAAGCTTCTTTTGTGGCTTGTCCTAAAAAAAC
TGGTAATagagaatgaaaaaaaacaaaaaaacagaaaacaattCTACTCT
gtcaatttttaaatcaagcacATCTAGATGCTTACCCAAGGAACACGAGG
AACCAACTTCATCCATCCAACATCTTTGAAAGTCTTCAGGCTGCCTTAGA
TTTTTCTGNccccccccccccgggctgcaTTCGCAAATCTGGGAAACAGA
GTCTTTAGAATTAAAGGTTTAATTTTGTAGATATCCTAATTATTTGTTAC
TTTTGTACCTTTCTTTGTTGttaatttcaaacaatttttcaaaagcttaa
cTACATAGATAGGGGGAGTCATTATAAACCAGGGGGAGTCTAAATTTGTT
AGGAAATATTAGCTCTAGGGAGTCATAATTTActagtttataagaactgg
GGAGTCATAATAAACTAGTGAATTTTTAACTGGGGAGTCACAATAATCTA
GTTTATTATGACTGGGGGGTTATAATTTAGGGGAGTTGAAATTAACTGTG
ACACCGGAATGCAGGTGAATGAAAAAAACTCTCATGCGGccggttggaaa
attttttgttgatatttttgataacttaatcattgaaatagaactatAAA
GATAACTGTTATGTACAAagaaacagtatgaagtaagccctgaatactaa
tgcaTCAATAttactaacgaacaaaacttgatttacaagcaggaatatct
aaccaaacgacgttgGATAGCTTCAACGGTCaacttcattttctttatga
tgaaacatatagatgaacccatagtctgcgacCGGGTCaggaaatctttt
tatttttgcctaatGCAGGATTTGTTACACAGACCCCCTCCaagaaaaag
tgacgaaaattatttgtttttgttctAGGTGTGGCATTTGCAAAAATCGC
AACCACTTTGATTTCTGGTATTGATATGGGTCAACCAAGACGCCCTTTGC
ATCAGTTCAGTGAAAAGCAAATCAAAGAAATCAAAGCATTTCTAACGAAG
GAAGGATACCTCAAAAAATGAGTGGACTTCCAcaggaaaaatgaaattca
tcGGCTTGGATTCATCATATGCGATAATTCAAGGACAAAATTTACAGTCG
TCGTTTATTTACaatgaaaaactgttttttattacttttttagaATATAG
TGATTTCTTAGATAATTTTGTAAGTATTTGATCTCTTAATAtttagaatt
gaaaaatcttatttGAAATCAGTGTAACCACAAACTCAATACATATTCTT
TAGCTGAAATAGAGACATAGAGACATAGTAAAAGACACTAGAATCGGGAT
TGGATGTGTGTTACTGGAAAAAGTCTGGGGCTACGAATTTTGAACTTTCT
AGTTTTGGATGTAAATGATCAATTCAAACACCTCCTTCTCCcagacctgg
taggatttttcaTCCAGTGGgtttaaaaataacggactgaaactcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005777XLOC_005777Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010279-exon-sc0000104-1491911889:579628..579702TCONS_00010279-exon-sc0000104-1491911889:579628..579702Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1510915933:579628..579702TCONS_00010279-exon-sc0000104-1510915933:579628..579702Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1575043694:579628..579702TCONS_00010279-exon-sc0000104-1575043694:579628..579702Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1491911889:580198..580285TCONS_00010279-exon-sc0000104-1491911889:580198..580285Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1510915933:580198..580285TCONS_00010279-exon-sc0000104-1510915933:580198..580285Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1575043694:580198..580285TCONS_00010279-exon-sc0000104-1575043694:580198..580285Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1491911889:586766..586823TCONS_00010279-exon-sc0000104-1491911889:586766..586823Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1510915933:586766..586823TCONS_00010279-exon-sc0000104-1510915933:586766..586823Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1575043694:586766..586823TCONS_00010279-exon-sc0000104-1575043694:586766..586823Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1491911889:587141..587216TCONS_00010279-exon-sc0000104-1491911889:587141..587216Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1510915933:587141..587216TCONS_00010279-exon-sc0000104-1510915933:587141..587216Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1575043694:587141..587216TCONS_00010279-exon-sc0000104-1575043694:587141..587216Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1491911889:587637..587729TCONS_00010279-exon-sc0000104-1491911889:587637..587729Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1510915933:587637..587729TCONS_00010279-exon-sc0000104-1510915933:587637..587729Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1575043694:587637..587729TCONS_00010279-exon-sc0000104-1575043694:587637..587729Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1491911889:589137..589282TCONS_00010279-exon-sc0000104-1491911889:589137..589282Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1510915933:589137..589282TCONS_00010279-exon-sc0000104-1510915933:589137..589282Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1575043694:589137..589282TCONS_00010279-exon-sc0000104-1575043694:589137..589282Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1491911889:590568..590614TCONS_00010279-exon-sc0000104-1491911889:590568..590614Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1510915933:590568..590614TCONS_00010279-exon-sc0000104-1510915933:590568..590614Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1575043694:590568..590614TCONS_00010279-exon-sc0000104-1575043694:590568..590614Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1491911889:591652..591736TCONS_00010279-exon-sc0000104-1491911889:591652..591736Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1510915933:591652..591736TCONS_00010279-exon-sc0000104-1510915933:591652..591736Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1575043694:591652..591736TCONS_00010279-exon-sc0000104-1575043694:591652..591736Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1491911889:592526..592571TCONS_00010279-exon-sc0000104-1491911889:592526..592571Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1510915933:592526..592571TCONS_00010279-exon-sc0000104-1510915933:592526..592571Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1575043694:592526..592571TCONS_00010279-exon-sc0000104-1575043694:592526..592571Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1491911889:594106..594673TCONS_00010279-exon-sc0000104-1491911889:594106..594673Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1510915933:594106..594673TCONS_00010279-exon-sc0000104-1510915933:594106..594673Clytia hemisphaericaexon
TCONS_00010279-exon-sc0000104-1575043694:594106..594673TCONS_00010279-exon-sc0000104-1575043694:594106..594673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:579628..594673 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.198493	0	0.00443997	0.00238163	1.53114	2.51985	20.7262	15.5736	11.7914	17.0906	12.1879	9.29739	27.3315	30.9151	12.5471	11.8745	5.80812	4.14231	4.028	3.58444	5.00894	5.45711	1.62638	0.0110954	4.40339	5.13489	19.8631	15.0437
Blast
[Close]
BLAST of TCONS_00010279 vs. Swiss-Prot (Human)
Match: NPL (N-acetylneuraminate lyase OS=Homo sapiens GN=NPL PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.164e-62
Identity = 108/267 (40.45%), Postives = 164/267 (61.42%), Query Frame = 3 
Query:    9 VNYEAIGKFVDHLV-QTGVNGVFVSGTTGEFTSLSMSERKMIAEAWLKFGKDKLDMIIIQCGSSCMDETKEMVRHAKENGADAVACISPSFLKPMNEEYLSDYLEEVASEAPNTPFMYYHLPSFTGVKVDMSKLMSLCYEKIETFAGLKCSSENMYEMIX-XXXXXXXXXXXXYGFDWQFLGGLAMGADCAVCTSFNFIGNKFVEITKAYKNGNMKEAQSIQHKIALDFNPFCSKYHGVAFAKIATTLISGIDMGQPRRPLHQFSEK 803
            +N+  IG++VD+LV + GV  +FV+GTTGE  SLS+SER+ +AE W+  GKDKLD +II  G+  + E++E+ +HA E GAD +A I+P FLKP  ++ L ++L+EVA+ AP  PF YYH+P+ TGVK+   +L+    +KI TF GLK S  ++ +      + + +     +G D Q L  L MGA  AV +++N++G K  ++ +A++  +   A + Q  I    N       GV+  K   TL+SGI MG PR PL + S +
Sbjct:   25 INFSVIGQYVDYLVKEQGVKNIFVNGTTGEGLSLSVSERRQVAEEWVTKGKDKLDQVIIHVGALSLKESQELAQHAAEIGADGIAVIAPFFLKPWTKDILINFLKEVAAAAPALPFYYYHIPALTGVKIRAEELLDGILDKIPTFQGLKFSDTDLLDFGQCVDQNRQQQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGKKTNQMLEAFEQKDFSLALNYQFCIQRFINFVVKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASRE 291
The following BLAST results are available for this feature:
BLAST of TCONS_00010279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPL2.164e-6240.45N-acetylneuraminate lyase OS=Homo sapiens GN=NPL P... [more]
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