TCONS_00010199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010199
Unique NameTCONS_00010199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010199 ID=TCONS_00010199|Name=TCONS_00010199|organism=Clytia hemisphaerica|type=transcript|length=1351bp
agcaaaatatagaaaatatttgaaaaaatgagaGAATTTAAAGAAATGAC
CTTAGAAACTGACCGTTTGAGTTTGGTGAGGATCAAAGGAGAAACTCACG
GTGAAGAACTCAATCGAGTGGTTTGCGATACTTTTGAATCATTGGAACCA
TGGGTACCCTGGGCTTTCAAAATTCCAACGGTCGAGGATACTATCAATGG
ACTTCGCTTGACCACTGACAACCACAACAATTACATCTTCAATATTTATC
TTCGTGAAAATGACCACGAACTCATCGGAAACGCTAAATGTGTGACCATA
GATAAAGAAAATTGTTATGAATTAGGGTACTGGTTACACCAGAAGCATTG
CGGCAAAGGATTTACGACAGAGTGTGTACAGAGGCTTATCAAATTCGCTC
GAAATGAACTGAAAGCATCGGCAGCTGTTATGATTATTAACGAGAACAAC
AAAGCAAGTTTACGAATCGCTGACAAAACTGGTTTTCAATTTGTACGAAA
AATTCTGGAAGATTCTTACGCGTTGAGACCGGAATGGAAAGATCGAATGA
ACCACTATGTACAGGTGCTTTTGTGAACAGTCGAATGAACTGCTATGTAC
AGGTGCTTTGTGAACAGTCGAATGAACTGCTATGTATAGTTGCTTTTGTG
AACAGTCGAATGAACCGCTATGTACAGGTGCTTTGTGAACAGTCGAATGA
ACTGCTATGTATAGTTGCTTTTGTGAACAGTCGAATGAACCGCTATGTAC
AGGTGCTTTGTGAACAGTCGAATGAACTGCTATGTATAGTTGCTTTTGTG
AACAGTCGAATGAACCGCTATGTACAGGTGCTTTGTGAACAGTCGAATGA
ACTGCTATGTATAGTTGCTTTTGTGAACAGTCGAATGAACCGCTATGTAC
AGGTGCTTTTGTGAACAGTCGAATGAACCGCTATGTACAGGTGCTTTGTG
AACAGTCGAATGAACTGCTATGTATAGGTGCTTTTGTGAACAGTCGAATG
AACCTCTATGTACAGGTGCTTTTGTGAACAGTCGAATGAACTGCTATTAC
AGGTGCTTTGTGAACAGTGGAATGAACCGCTATGTACAGGTGCTTCTATG
AACAGTCGAATGAACCGATACGATGCTGTTGGTTATTGTATAATGGTTCA
ACTGTAATCTACATTATGTATGACACAACCATGTTGATTTCGAAATTGTG
GGAAGCTTTGGGAAAAAAGCCCACATAAAGTagatttaattcaaaaatca
tttctgATTACCTCAACACGAACGTGAAAGCAATGAACTTCATTTCGTAT
TCGGTGAATTTGAGTGGATGATTATACTTTATGGGGACTTTTCGTTTTTT
G
Run BLAST on NCBI

protein sequence of TCONS_00010199-protein

>TCONS_00010199-protein ID=TCONS_00010199-protein|Name=TCONS_00010199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MREFKEMTLETDRLSLVRIKGETHGEELNRVVCDTFESLEPWVPWAFKIP
TVEDTINGLRLTTDNHNNYIFNIYLRENDHELIGNAKCVTIDKENCYELG
YWLHQKHCGKGFTTECVQRLIKFARNELKASAAVMIINENNKASLRIADK
TGFQFVRKILEDSYALRPEWKDRMNHYVQVLL
Run BLAST on NCBI

transcript from alignment at sc0000103:196479..199060-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010199 ID=TCONS_00010199|Name=TCONS_00010199|organism=Clytia hemisphaerica|type=transcript|length=2582bp|location=Sequence derived from alignment at sc0000103:196479..199060- (Clytia hemisphaerica)
AGCAAAATATAGAAAATATTTGAAAAAATGAGAGAATTTAAAGAAATGAC
CTTAGAAACTGACCGTTTGAGTTTGGTGAGGATCAAAGGAGAAACTCACG
GTGAAGAACTCAATCGAGTGGTTTGCGATACTTTTGAATCATTGGAACCA
TGGGTACCCTGGGCTTTCAAAATTCCAACGGTCGAGGTATGATNATTGGA
ACCATGGGTACCCTGGGCTTTCAAAATTCCAACGGTTGAGGTATGATCAT
TTTTCAGTTTACGTGATAGTAAAGACCGGTATCCACTTTCGCGCCAAATG
GGCGACACCTTTTTTGCCTGAAGAAAAGATTACGTCATAAAAAAGTTTCG
CGTGAACAAAAAAAAAGTTAAAGGGAGTTCAGCTTTTTTCAACAGTTACG
TCAATTTTGACCAATGGGATTGTTTCATTTTTCAACCGATCAATGAATGA
CCTTACAAAAACGTTAAAAAAATTTTCGCTCATTTCGCGTGAAAGTGGAG
ACCGGCCTTAAGGCCATTGTATGATAAACGGTTTCAATTCTTTTGGTTTT
TACAAACAATTAAACTTTACAATTTTTCACCATAATGGTACACTTTCCCT
TGCACACCCAGAGTGCTCTGTTCTGTCAAGCAAGTCATCCACTTCGGAGA
GTTGTCAAGGGATCGCTTTGGATCGGAATATTTTGGAAAACCGATCTGAA
CAGTTTTGCAATAATATCCACTTCAAATTTTCTGAATCAGATTCTTTCTG
TTTACAATATTCATACAAAGAAAATTAAATTAATTTAATCTTCTACAGTT
GTCCCATTGTTTGAAATCAATAGAACCGTTTCAATCCGACACGGATCGCA
AAAAAAGTTGAAAAAATCCAACTTTTTTTCTATCCGTTTTAACCAAAACA
CGTGAACATTCGAACCGTTTACGTGAAACGAATATGTGCAAATGGGTTGA
AGATAATCCCAAGAACTATAGAAGCCGTGAAAAATTATCCGGAGTGGATA
ACCCGCTTTACAATTAGCCCTGTATATCGTTAAGCTTGGTACTCACTAGT
TGAAAAAAAGTGGCGCTCTAAAACTAAAACCACAAAGCAACAAAAAGCCA
CACAAATTATAGTGAGTACACACATTAGTCGCACAAGTCTAGTAAAAAAA
TCTTGTTTAACAATGCGGTGTCTTTGAACCCTGCATCTAACATTACGCGT
GCGACTAAACATCAGGCGCGTGCGACTAGTGTTAAACGTCACTTTTTTTC
AATACGTGAGTACCAAGCTTAACAAATTACTCTGTAAAATCATTTGTTGC
TGTATCCAGGATGGTACTCTGTTGAGGACCGAAACGTCTACACAAAATTA
ATTAAAATGAACAAGAAGCTTGTGTTTATGAGAGGATCGAATTGTTCAAC
AAATTATTTTCTCTCAGGATACTATCAATGGACTTCGCTTGACCACTGAC
AACCACAACAATTACATCTTCAATATTTATCTTCGTGAAAATGACCACGA
ACTCATCGGAAACGCTAAATGTGTGACCATAGATAAAGAAAATTGTTATG
AATTAGGGTACTGGTTACACCAGAAGCATTGCGGCAAAGGATTTACGACA
GAGTGTGTACAGAGGCTTATCAAATTCGCTCGAAATGAACTGAAAGCATC
GGCAGCTGTTATGATTATTAACGAGAACAACAAAGCAAGTTTACGAATCG
CTGACAAAACTGGTTTTCAATTTGTACGAAAAATTCTGGAAGATTCTTAC
GCGTTGAGACCGGAATGGAAAGATCGAATGAACCACTATGTACAGGTGCT
TTTGTGAACAGTCGAATGAACTGCTATGTACAGGTGCTTTGTGAACAGTC
GAATGAACTGCTATGTATAGTTGCTTTTGTGAACAGTCGAATGAACCGCT
ATGTACAGGTGCTTTGTGAACAGTCGAATGAACTGCTATGTATAGTTGCT
TTTGTGAACAGTCGAATGAACCGCTATGTACAGGTGCTTTGTGAACAGTC
GAATGAACTGCTATGTATAGTTGCTTTTGTGAACAGTCGAATGAACCGCT
ATGTACAGGTGCTTTGTGAACAGTCGAATGAACTGCTATGTATAGTTGCT
TTTGTGAACAGTCGAATGAACCGCTATGTACAGGTGCTTTTGTGAACAGT
CGAATGAACCGCTATGTACAGGTGCTTTGTGAACAGTCGAATGAACTGCT
ATGTATAGGTGCTTTTGTGAACAGTCGAATGAACCTCTATGTACAGGTGC
TTTTGTGAACAGTCGAATGAACTGCTATTACAGGTGCTTTGTGAACAGTG
GAATGAACCGCTATGTACAGGTGCTTCTATGAACAGTCGAATGAACCGAT
ACGATGCTGTTGGTTATTGTATAATGGTTCAACTGTAATCTACATTATGT
ATGACACAACCATGTTGATTTCGAAATTGTGGGAAGCTTTGGGAAAAAAG
CCCACATAAAGTAGATTTAATTCAAAAATCATTTCTGATTACCTCAACAC
GAACGTGAAAGCAATGAACTTCATTTCGTATTCGGTGAATTTGAGTGGAT
GATTATACTTTATGGGGACTTTTCGTTTTTTG

Coding sequence (CDS) from alignment at sc0000103:196479..199060-

>TCONS_00010199 ID=TCONS_00010199|Name=TCONS_00010199|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0000103:196479..199060- (Clytia hemisphaerica)
GATACTATCAATGGACTTCGCTTGACCACTGACAACCACAACAATTACAT
CTTCAATATTTATCTTCGTGAAAATGACCACGAACTCATCGGAAACGCTA
AATGTGTGACCATAGATAAAGAAAATTGTTATGAATTAGGGTACTGGTTA
CACCAGAAGCATTGCGGCAAAGGATTTACGACAGAGTGTGTACAGAGGCT
TATCAAATTCGCTCGAAATGAACTGAAAGCATCGGCAGCTGTTATGATTA
TTAACGAGAACAACAAAGCAAGTTTACGAATCGCTGACAAAACTGGTTTT
CAATTTGTACGAAAAATTCTGGAAGATTCTTACGCGTTGAGACCGGAATG
GAAAGATCGAATGAACCACTATGTACAGGTGCTTTTGTGAATGAGAGAAT
TTAAAGAAATGACCTTAGAAACTGACCGTTTGAGTTTGGTGAGGATCAAA
GGAGAAACTCACGGTGAAGAACTCAATCGAGTGGTTTGCGATACTTTTGA
ATCATTGGAACCATGGGTACCCTGGGCTTTCAAAATTCCAACGGTCGAGG
ATACTATCAATGGACTTCGCTTGACCACTGACAACCACAACAATTACATC
TTCAATATTTATCTTCGTGAAAATGACCACGAACTCATCGGAAACGCTAA
ATGTGTGACCATAGATAAAGAAAATTGTTATGAATTAGGGTACTGGTTAC
ACCAGAAGCATTGCGGCAAAGGATTTACGACAGAGTGTGTACAGAGGCTT
ATCAAATTCGCTCGAAATGAACTGAAAGCATCGGCAGCTGTTATGATTAT
TAACGAGAACAACAAAGCAAGTTTACGAATCGCTGACAAAACTGGTTTTC
AATTTGTACGAAAAATTCTGGAAGATTCTTACGCGTTGAGACCGGAATGG
AAAGATCGAATGAACCACTATGTACAGGTGCTTTTGTGAATGAGAGAATT
TAAAGAAATGACCTTAGAAACTGACCGTTTGAGTTTGGTGAGGATCAAAG
GAGAAACTCACGGTGAAGAACTCAATCGAGTGGTTTGCGATACTTTTGAA
TCATTGGAACCATGGGTACCCTGGGCTTTCAAAATTCCAACGGTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005721XLOC_005721Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010199-proteinTCONS_00010199-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010199-exon-sc0000103-1575043694:198875..199060TCONS_00010199-exon-sc0000103-1575043694:198875..199060Clytia hemisphaericaexon
TCONS_00010199-exon-sc0000103-1575043694:196479..197643TCONS_00010199-exon-sc0000103-1575043694:196479..197643Clytia hemisphaericaexon
TCONS_00010199-exon-sc0000103-1510915933:198875..199060TCONS_00010199-exon-sc0000103-1510915933:198875..199060Clytia hemisphaericaexon
TCONS_00010199-exon-sc0000103-1510915933:196479..197643TCONS_00010199-exon-sc0000103-1510915933:196479..197643Clytia hemisphaericaexon
TCONS_00010199-exon-sc0000103-1491911889:198875..199060TCONS_00010199-exon-sc0000103-1491911889:198875..199060Clytia hemisphaericaexon
TCONS_00010199-exon-sc0000103-1491911889:196479..197643TCONS_00010199-exon-sc0000103-1491911889:196479..197643Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:196479..199060 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0902871	0.175418	0	0.103239	0.120485	0.0319638	0.267604	0	0.35928	0.356696	0.479109	0.211971	0.468841	0.488332	0.656467	0.764872	0	0.556293	0.254136	0.402716	0.331559	0	0.501282	0.504692	0	0	0	0.454618	0.379293	0.491832
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000182GNAT_dom
IPR016181Acyl_CoA_acyltransferase
Vocabulary: Molecular Function
TermDefinition
GO:0008080N-acetyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008080 N-acetyltransferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top