|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010086 ID=TCONS_00010086|Name=TCONS_00010086|organism=Clytia hemisphaerica|type=transcript|length=343bp
TGACAGACAGTTGAAATCAGCTCTCAATACGTTTGATGCATGTATTAAAT
TCAAGAGCGTACAGAACATCAATCTCTTGAAATCGCCTCCTGGTGACAAG
AATATTGAAAAGCAGCCAAACTTTTATTCCACcgcaaagaaaagaaaagc
gaAGAACAAGGTTCGCTTTGCGAGATCCACGTCAGGAgaactgaaagatt
tttttgagtTAAAACCATGGGAAGATCAAACGAGTAACCCCGACAACGGG
AGAGATGAAGTGCCAAGTACACAAATCACGTCTACAACTCAGAAGAAGGG
GAAAGTAGCAAACCGCCAAAAAAAAGCTTGAGATACTTCAAAG Run BLAST on NCBI transcript from alignment at sc0000102:417880..420497+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010086 ID=TCONS_00010086|Name=TCONS_00010086|organism=Clytia hemisphaerica|type=transcript|length=2618bp|location=Sequence derived from alignment at sc0000102:417880..420497+ (Clytia hemisphaerica)
TGACAGACAGTTGAAATCAGCTCTCAATACGTTTGATGCATGTATTAAAT
TCAAGAGCGTACAGAACATCAATCTCTTGAAATCGCCTCCTGGTGACAAG
AATATTGAAAAGCAGCCAAACTTTTATTCCACcgcaaagaaaagaaaagc
gaAGAACAAGGTTCGCTTTGCGAGATCCACGTCAGGAgaactgaaagatt
tttttgagtTAAAACCATGGGAAGGTGATTCCCCTTTTAAGTACTTTACA
TGACTACTTTAGATAATTTGCTGTGCCTTTCATTTAATTCAATTTATATT
GGTAAAGCGATACAACATAATCATCAGTTCAATATACTAACTTTATTAGA
ACGCTGTCTAGTTTGTTAAATTCGCTTCAATATTTATaccattttcattt
gtcaagCATCTAACAATGTAACAGCTTAAAATCTAATTCTAATTCTAATT
TTAGATCAAACGAGTAACCCCGACAACGGGAGAGATGAAGTGCCAAGTAC
ACAAATCACGTCTACAAGTATGAATAATTATCTTTACGGTCAAAAGAGAT
GATAATATCTGTgggtttttcaaattttgggttcgtttttgaaaatttcc
tttcAACTCTAGGTCAAACGAGCAACCCCGACAATGGGAGAGATGAAGTG
CCAAGTACACAAATCACGTCAACAAAGTATACACTTACCTTATACTTATA
CGgtcaaaaaatttgatgataTCTGATGAATACTTAATTATCTATataca
taaagattaagaaacgttgtatttcttttcaatacttaaagtttcttgct
ttcgcattcatcagttgattagaaataactatcaaaacaaaattccacgt
ttatttaaaaaattcaatacagcgtcttcatataaaaaaattgacttcaa
tcTTTAGAATCAAAGTTTTCAAGTAGGTGTTTGTTTATGTGCCGGCATTT
TGAGATAAGTTCAGATCTAGAGTTCAGTAAATTGTCTTTACGcaaagata
tttcaaatttttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGAACGGTTTGCACTTTCTTACAATTC
GCCATGTAACTTTAGGGTTGGTCTGGTTACGAGAATGCCGCCAAAATTCG
TTCGAGAGCTCGGTTTCATTTTCGTATTTGACGTGGTTGAACGATTTCTT
GTGGTTCGCATATCGCTTTTAGAAGGTTGGTTCTATCTATATACATAATT
TCCTCCCACCTGGATTCAAAGGGGAAAGGATTCTGGGTAATAGCCTTCTC
CTCTTTCTGCCTTTCAAGCCTGTAAATAATAAAGAgcataaaaaaagcaa
tttattagtaaaaatagaaagttccaAGTTGTTTCTGagcaaccgagttg
ctaagggctcaggcctcaaaatggcccAAAAAAATAAGCAACTTGCTTAG
CAACCCTGATGCCTCAAATCCAAATAagcaacttttttcctcagcaaTAC
TTTAgacgtagaaactttcgcgagcagaaactttcgcgaattttggccct
tttcgcgaaagtaaatgtctttaaaaattctaggaagggccattcgcgaa
agtttatgctcgcgaaaaattcttaacaaaatggaaaatctgtaaaactt
caaattttgaataaaatgtaacttttatggctatttttagcctgctaaaa
gactaataagtcaaaggagaaatgtttcaagccaatctaagaagtatttg
tccctctaagccattttttcatatgaaaattctcaattttacgtcttgat
tcgcgaaagtttatgctcgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNaatatttttccgttaaattcgcgaaagtaaatgtcgtg
aattttgcgatttttcgtcctcgcgaaagtttctgctcgcgaaagtttgt
acgcctaaagtaaaaaGTAACTTTGACACAACTTTGAAAGAAAGCCTTGA
ATATCTTCGAAAAATGCTTCTACTgcccattcaaaattgaaaaattgttg
aaaaatgcaaaattgtGCCTTTCAACAAttttaagcttgaaaattttaag
caaCCTTAAAAGCATTGGGCCTGGATTTCGAAAAATCCTTAGCAACTCCA
GGCCTGACCCGAAAAAtggagttgcttattaaaaaaaatgtgtaacagaa
gcttcttcattttttctaaaatttatttgcacaaaaagtttttagaaaaa
acGAAGAAGTTTCTGTTAATAAACAACTATTTACTAAAAATGTATCAAAT
GATTGATTTGTTTAAGAAAGTTCAAAGCACTCTGTGGTCATCTGAATTCT
TTCTAATTCAAGCTCAGAAGAAGGGGAAAGTAGCAAACCGCCAAAAAAAA
GCTTGAGATACTTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010086-exon-sc0000102-1491911889:417880..418103 | TCONS_00010086-exon-sc0000102-1491911889:417880..418103 | Clytia hemisphaerica | exon |
| TCONS_00010086-exon-sc0000102-1510915933:417880..418103 | TCONS_00010086-exon-sc0000102-1510915933:417880..418103 | Clytia hemisphaerica | exon |
| TCONS_00010086-exon-sc0000102-1575043694:417880..418103 | TCONS_00010086-exon-sc0000102-1575043694:417880..418103 | Clytia hemisphaerica | exon |
| TCONS_00010086-exon-sc0000102-1491911889:418334..418396 | TCONS_00010086-exon-sc0000102-1491911889:418334..418396 | Clytia hemisphaerica | exon |
| TCONS_00010086-exon-sc0000102-1510915933:418334..418396 | TCONS_00010086-exon-sc0000102-1510915933:418334..418396 | Clytia hemisphaerica | exon |
| TCONS_00010086-exon-sc0000102-1575043694:418334..418396 | TCONS_00010086-exon-sc0000102-1575043694:418334..418396 | Clytia hemisphaerica | exon |
| TCONS_00010086-exon-sc0000102-1491911889:420442..420497 | TCONS_00010086-exon-sc0000102-1491911889:420442..420497 | Clytia hemisphaerica | exon |
| TCONS_00010086-exon-sc0000102-1510915933:420442..420497 | TCONS_00010086-exon-sc0000102-1510915933:420442..420497 | Clytia hemisphaerica | exon |
| TCONS_00010086-exon-sc0000102-1575043694:420442..420497 | TCONS_00010086-exon-sc0000102-1575043694:420442..420497 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:417880..420497 + |
Blast
The following BLAST results are available for this feature:
|
