TCONS_00010128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010128
Unique NameTCONS_00010128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010128 ID=TCONS_00010128|Name=TCONS_00010128|organism=Clytia hemisphaerica|type=transcript|length=680bp
AATTCCAGAATTCTTTTCTTAGGTTCAAAACAACCGAGCCCAAATGCATG
TTGTCAATTGCTCCTACCCTGCTGCACCACTGGTAGCGCTATTTCTCAAC
CTCAACCTCAACAAAACCTCGGGTACAATCAAGCATTACAAAACCCAGGG
TCTTTGATAGGAGGTCAACCACCAACTCTGACAGAAAGCTCTTCTTCCGA
AACGTCAACATCAAATCATAtgcatgaaaacaaagaaagtggaCCTACGA
ATGATAAGAATACACAAAACACCGCTTCTAATGATAGTAATAATTCACAG
AACAGCGATAATGATAATTTACAGAACAGTGATGATAGTAATTCACAGAA
TAATGAATCTCCTGAAAATACAAATTCGCAGAACAACAGCCCTTTGGGGA
GTGATAACTCACAAAACAGCGAGTCAGCAGATAATAGTAATTCACAGAAC
ACAGGAACTGGCCAATCACCAAGTGACACGTCATTATCACCATCAAATAA
CCAATCAGATCAACAAAATGCTCCCACATCACCCAATCAAAATCAAGGAC
AATCAAACAATAACAACGATTTGCTCGATATAGACTCGCTTGATTTAGAT
TTAACACCCAAAAAACCGAAAGAAAAGCCGAAAAACGAAAACACGAATAA
TAGTAAAAATCCAAACAAAGACAATAGTAG
Run BLAST on NCBI

protein sequence of TCONS_00010128-protein

>TCONS_00010128-protein ID=TCONS_00010128-protein|Name=TCONS_00010128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
NSRILFLGSKQPSPNACCQLLLPCCTTGSAISQPQPQQNLGYNQALQNPG
SLIGGQPPTLTESSSSETSTSNHMHENKESGPTNDKNTQNTASNDSNNSQ
NSDNDNLQNSDDSNSQNNESPENTNSQNNSPLGSDNSQNSESADNSNSQN
TGTGQSPSDTSLSPSNNQSDQQNAPTSPNQNQGQSNNNNDLLDIDSLDLD
LTPKKPKEKPKNENTNNSKNPNKDNS
Run BLAST on NCBI

transcript from alignment at sc0000102:321004..321683

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010128 ID=TCONS_00010128|Name=TCONS_00010128|organism=Clytia hemisphaerica|type=transcript|length=680bp|location=Sequence derived from alignment at sc0000102:321004..321683 (Clytia hemisphaerica)
CTACTATTGTCTTTGTTTGGATTTTTACTATTATTCGTGTTTTCGTTTTT
CGGCTTTTCTTTCGGTTTTTTGGGTGTTAAATCTAAATCAAGCGAGTCTA
TATCGAGCAAATCGTTGTTATTGTTTGATTGTCCTTGATTTTGATTGGGT
GATGTGGGAGCATTTTGTTGATCTGATTGGTTATTTGATGGTGATAATGA
CGTGTCACTTGGTGATTGGCCAGTTCCTGTGTTCTGTGAATTACTATTAT
CTGCTGACTCGCTGTTTTGTGAGTTATCACTCCCCAAAGGGCTGTTGTTC
TGCGAATTTGTATTTTCAGGAGATTCATTATTCTGTGAATTACTATCATC
ACTGTTCTGTAAATTATCATTATCGCTGTTCTGTGAATTATTACTATCAT
TAGAAGCGGTGTTTTGTGTATTCTTATCATTCGTAGGtccactttctttg
ttttcatgcaTATGATTTGATGTTGACGTTTCGGAAGAAGAGCTTTCTGT
CAGAGTTGGTGGTTGACCTCCTATCAAAGACCCTGGGTTTTGTAATGCTT
GATTGTACCCGAGGTTTTGTTGAGGTTGAGGTTGAGAAATAGCGCTACCA
GTGGTGCAGCAGGGTAGGAGCAATTGACAACATGCATTTGGGCTCGGTTG
TTTTGAACCTAAGAAAAGAATTCTGGAATT

Coding sequence (CDS) from alignment at sc0000102:321004..321683

>TCONS_00010128 ID=TCONS_00010128|Name=TCONS_00010128|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0000102:321004..321683 (Clytia hemisphaerica)
ACTATTGTCTTTGTTTGGATTTTTACTATTATTCGTGTTTTCGTTTTTCG
GCTTTTCTTTCGGTTTTTTGGGTGTTAAATCTAAATCAAGCGAGTCTATA
TCGAGCAAATCGTTGTTATTGTTTGATTGTCCTTGATTTTGATTGGGTGA
TGTGGGAGCATTTTGTTGATCTGATTGGTTATTTGATGGTGATAATGACG
TGTCACTTGGTGATTGGCCAGTTCCTGTGTTCTGTGAATTACTATTATCT
GCTGACTCGCTGTTTTGTGAGTTATCACTCCCCAAAGGGCTGTTGTTCTG
CGAATTTGTATTTTCAGGAGATTCATTATTCTGTGAATTACTATCATCAC
TGTTCTGTAAATTATCATTATCGCTGTTCTGTGAATTATTACTATCATTA
GAAGCGGTGTTTTGTGTATTCTTATCATTCGTAGGtccactttctttgtt
ttcatgcaTATGATTTGATGTTGACGTTTCGGAAGAAGAGCTTTCTGTCA
GAGTTGGTGGTTGACCTCCTATCAAAGACCCTGGGTTTTGTAATGCTTGA
TTGTACCCGAGGTTTTGTTGAGGTTGAGGTTGAGAAATAGCGCTACCAGT
GGTGCAGCAGGGTAGGAGCAATTGACAACATGCATTTGGGCTCGGTTGTT
TTGAACCTAAGAAAAGAATTCTGGAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005682XLOC_005682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010128-exon-sc0000102-1491911889:321004..321683TCONS_00010128-exon-sc0000102-1491911889:321004..321683Clytia hemisphaericaexon
TCONS_00010128-exon-sc0000102-1510915933:321004..321683TCONS_00010128-exon-sc0000102-1510915933:321004..321683Clytia hemisphaericaexon
TCONS_00010128-exon-sc0000102-1575043694:321004..321683TCONS_00010128-exon-sc0000102-1575043694:321004..321683Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010128-proteinTCONS_00010128-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:321004..321683 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.753243	0.440718	0.682288	1.00127	0.609474	0.0802691	2.22735	3.62646	0.761692	0.864855	0.83945	0.652152	2.80537	3.43365	2.09581	5.00315	2.03564	2.66604	0	0.0837889	0.873934	1.49196	0.518192	0.785186	2.42617	3.1036	0.619707	0	0.41802	0.255538
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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