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TCONS_00073847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073847
Unique NameTCONS_00073847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073847 ID=TCONS_00073847|Name=TCONS_00073847|organism=Clytia hemisphaerica|type=transcript|length=481bp
atttaatgtatgataactcaaaatttaagttagggCTTCCTCTatacgat
taaaaaaaaatttaaatctgaaAGCTCACAATaactcgacaaacctgtat
acttttttttggtgcacccggtatatcaCAATTTCCTTCACTTCCATCCC
CAAAAAACATCCACAACAACAAAATCTGAAAACACCACCGATACTCCAAT
AGTGTCTTTTCTAAGACCAAAGACCGATCTTAAATTACTCCCCGACCACG
AGTATAAAAGACACTACGAAGAGCTAGAAGCTAAATGAAAAATGGCGGCT
AGAGGTGCAAAGTCCTCTAGAAACTCACTACCTCGACGGAGACACCAAAA
CACAGTCGAAGATGTCTCCCAAATCAAAAATACATACAATACAAATTGCA
TGCGTGATGACCGCAAGAGATTGCAAGTTGATACAGAACATTACAAAAAC
AGTTAAGGAATCAATAAAAAGTACAATGGAT
Run BLAST on NCBI

transcript from alignment at scaffold_98:242615..243095

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073847 ID=TCONS_00073847|Name=TCONS_00073847|organism=Clytia hemisphaerica|type=transcript|length=481bp|location=Sequence derived from alignment at scaffold_98:242615..243095 (Clytia hemisphaerica)
ATCCATTGTACTTTTTATTGATTCCTTAACTGTTTTTGTAATGTTCTGTA TCAACTTGCAATCTCTTGCGGTCATCACGCATGCAATTTGTATTGTATGT ATTTTTGATTTGGGAGACATCTTCGACTGTGTTTTGGTGTCTCCGTCGAG GTAGTGAGTTTCTAGAGGACTTTGCACCTCTAGCCGCCATTTTTCATTTA GCTTCTAGCTCTTCGTAGTGTCTTTTATACTCGTGGTCGGGGAGTAATTT AAGATCGGTCTTTGGTCTTAGAAAAGACACTATTGGAGTATCGGTGGTGT TTTCAGATTTTGTTGTTGTGGATGTTTTTTGGGGATGGAAGTGAAGGAAA TTGtgatataccgggtgcaccaaaaaaaagtatacaggtttgtcgagttA TTGTGAGCTttcagatttaaatttttttttaatcgtatAGAGGAAGccct aacttaaattttgagttatcatacattaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045865XLOC_045865Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073847-exon-scaffold_98-1491911889:242615..243095TCONS_00073847-exon-scaffold_98-1491911889:242615..243095Clytia hemisphaericaexon
TCONS_00073847-exon-scaffold_98-1510915933:242615..243095TCONS_00073847-exon-scaffold_98-1510915933:242615..243095Clytia hemisphaericaexon
TCONS_00073847-exon-scaffold_98-1575043694:242615..243095TCONS_00073847-exon-scaffold_98-1575043694:242615..243095Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:242615..243095 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.26164 0.255215 0 0.144845 0.704493 0.417261 0.335861 1.45869 0.22015 0.818688 0 0.609974 0.17408 0 0.074135 0.159199 0.29402 0.401441 0 0.29063 0.25771 0.18495 0 0.136206 1.82343 1.50268 0.357936 0.191013 0.724639 0.147575
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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