Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073845 ID=TCONS_00073845|Name=TCONS_00073845|organism=Clytia hemisphaerica|type=transcript|length=1736bp
ACTTTCAGGTCGACCGGTGAATGTACTATCCCTGTCAATCATTGCAACAC
GATTTACCTCAAAGTGAACACACAGCCTATCGAGCCTCCTCTTGTTCTTG
ATCATCACGTTCCTATATTCAACTGGAGTAAATCTGCTGTCGATTCACAA
CATTGGAATCTAACTGCTAAAAGAGTTCTCCCTTACATCGATGGTTTCAA
TCATGTGCAGAAGATCGCAACCCTTGCAAATGTTGATCTTGCTTTGGTCA
GATCAGCCCTTCAAACGCTTGTCTTTCACGGCGTTCTtgagttgactccc
atttttcTATATTCCAACATGTATGCAGTGAAGCCAGAAATTTCTAGCTT
GTATCGCGATGAAGCTTTTCAGAAAGAATGCGTCTCTTTTGTTGCTAGAG
ATAAAACGAATCTGCCTGAATTCCGTGATGTCTTTATGTTGTACTGCGCT
CTCGGTCCCGGCATTTCAGTGAGTGCTTTGTGCGGGAGACATGATCTACA
AGAACTTGGTATTGATGAAAAGAAATTGATATTGTTTGGCATTGTGAAAA
AGATTATccataaattatgtaaattccCAGTATTGACTTCACCGGATTCC
CTCTCGTTAGTGATCAGAGAGAAATCGCGTTGGATGACTGGCTATTATGA
TTATGATGAGATTTGTTGCATGTCTGCAATGAACGGAACTCCCATCACAC
ATGATGAGTTGAACGGCATCACGGAGAATGAACAGCAGGTTGTCCATATT
TGGAAATGACACTTTCAACTTGGTTTAGTTTAGGCCATTTGACTAAAGAT
ATGTAGGTGGATTTTTGGATCATTGTTTTGTAGTCTCTTTCCTCTGCATG
TAAActacttttgttgtttttaccgTATCTTCCCCCATTTTAACGCACAC
TTCAATAGGACGATGCCTCGAATGTTTGTCAGAAACTGTTAATGAATATT
CCCTTAAGTAATTATGAGATACTAGAATTTTGAAGGTAAATTACTCTTTG
AGAAAATATCTCCTTTTTTATCGCGTACCGTTGACAATATTTTTTCGGCT
CAAAATGGGGGAAATACAGGGTATAGTATGTTATGATACTAAATTGAAGA
AGGTATGATCCAAGTCCGTTCCACGACTCGATTTTTCTAGTATGAGCGGG
ctaatttttatgatttttaagatattttgtttttaaataaaagtgatgAT
AACAAAAAGTACGCTGCGTATTTCTCGTGAACGTCAAAGCATAGTCCGTA
AACAATTATCTTATTAAACTGATTTTTCTGTTAGAATTAGGATATGTTTT
CTCGCTGCCTCAGCGGTAGATTACTATAATTCAACGGGGAGCCTATAGAT
AAATGAAAATAGGAAGAAAATGTTTTAGATGGGATTTCATAAGGaagaaa
accaaaaagaaaatgatagaatataaatatttttatacaaagtatagagg
ttttcattttttattaagttacgtaatttccgctatcaaggaagcaaacg
ttcgaatctgtagaggcgatcccttacgcaaatcgaacgttagctaccat
aatggcggaaattatgcaacttgaaggttttatttttacataaatgtttc
cattttatatgagacacatatttcatatcaggacagtggttacctattgt
tatattgtgctgatataagcaaaaaatgtttttcttttcctctttctgac
aaatcttgctccacatccgtgtcaattcaatatcaa Run BLAST on NCBI protein sequence of TCONS_00073845-protein >TCONS_00073845-protein ID=TCONS_00073845-protein|Name=TCONS_00073845-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
TFRSTGECTIPVNHCNTIYLKVNTQPIEPPLVLDHHVPIFNWSKSAVDSQ
HWNLTAKRVLPYIDGFNHVQKIATLANVDLALVRSALQTLVFHGVLELTP
IFLYSNMYAVKPEISSLYRDEAFQKECVSFVARDKTNLPEFRDVFMLYCA
LGPGISVSALCGRHDLQELGIDEKKLILFGIVKKIIHKLCKFPVLTSPDS
LSLVIREKSRWMTGYYDYDEICCMSAMNGTPITHDELNGITENEQQVVHI
WK Run BLAST on NCBI transcript from alignment at scaffold_98:237005..238740 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073845 ID=TCONS_00073845|Name=TCONS_00073845|organism=Clytia hemisphaerica|type=transcript|length=1736bp|location=Sequence derived from alignment at scaffold_98:237005..238740 (Clytia hemisphaerica)
ttgatattgaattgacacggatgtggagcaagatttgtcagaaagaggaa
aagaaaaacattttttgcttatatcagcacaatataacaataggtaacca
ctgtcctgatatgaaatatgtgtctcatataaaatggaaacatttatgta
aaaataaaaccttcaagttgcataatttccgccattatggtagctaacgt
tcgatttgcgtaagggatcgcctctacagattcgaacgtttgcttccttg
atagcggaaattacgtaacttaataaaaaatgaaaacctctatactttgt
ataaaaatatttatattctatcattttctttttggttttcttCCTTATGA
AATCCCATCTAAAACATTTTCTTCCTATTTTCATTTATCTATAGGCTCCC
CGTTGAATTATAGTAATCTACCGCTGAGGCAGCGAGAAAACATATCCTAA
TTCTAACAGAAAAATCAGTTTAATAAGATAATTGTTTACGGACTATGCTT
TGACGTTCACGAGAAATACGCAGCGTACTTTTTGTTATcatcacttttat
ttaaaaacaaaatatcttaaaaatcataaaaattagCCCGCTCATACTAG
AAAAATCGAGTCGTGGAACGGACTTGGATCATACCTTCTTCAATTTAGTA
TCATAACATACTATACCCTGTATTTCCCCCATTTTGAGCCGAAAAAATAT
TGTCAACGGTACGCGATAAAAAAGGAGATATTTTCTCAAAGAGTAATTTA
CCTTCAAAATTCTAGTATCTCATAATTACTTAAGGGAATATTCATTAACA
GTTTCTGACAAACATTCGAGGCATCGTCCTATTGAAGTGTGCGTTAAAAT
GGGGGAAGATAcggtaaaaacaacaaaagtagTTTACATGCAGAGGAAAG
AGACTACAAAACAATGATCCAAAAATCCACCTACATATCTTTAGTCAAAT
GGCCTAAACTAAACCAAGTTGAAAGTGTCATTTCCAAATATGGACAACCT
GCTGTTCATTCTCCGTGATGCCGTTCAACTCATCATGTGTGATGGGAGTT
CCGTTCATTGCAGACATGCAACAAATCTCATCATAATCATAATAGCCAGT
CATCCAACGCGATTTCTCTCTGATCACTAACGAGAGGGAATCCGGTGAAG
TCAATACTGggaatttacataatttatggATAATCTTTTTCACAATGCCA
AACAATATCAATTTCTTTTCATCAATACCAAGTTCTTGTAGATCATGTCT
CCCGCACAAAGCACTCACTGAAATGCCGGGACCGAGAGCGCAGTACAACA
TAAAGACATCACGGAATTCAGGCAGATTCGTTTTATCTCTAGCAACAAAA
GAGACGCATTCTTTCTGAAAAGCTTCATCGCGATACAAGCTAGAAATTTC
TGGCTTCACTGCATACATGTTGGAATATAgaaaaatgggagtcaactcaA
GAACGCCGTGAAAGACAAGCGTTTGAAGGGCTGATCTGACCAAAGCAAGA
TCAACATTTGCAAGGGTTGCGATCTTCTGCACATGATTGAAACCATCGAT
GTAAGGGAGAACTCTTTTAGCAGTTAGATTCCAATGTTGTGAATCGACAG
CAGATTTACTCCAGTTGAATATAGGAACGTGATGATCAAGAACAAGAGGA
GGCTCGATAGGCTGTGTGTTCACTTTGAGGTAAATCGTGTTGCAATGATT
GACAGGGATAGTACATTCACCGGTCGACCTGAAAGT Coding sequence (CDS) from alignment at scaffold_98:237005..238740 >TCONS_00073845 ID=TCONS_00073845|Name=TCONS_00073845|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_98:237005..238740 (Clytia hemisphaerica)
TCATTTCCAAATATGGACAACCTGCTGTTCATTCTCCGTGATGCCGTTCA
ACTCATCATGTGTGATGGGAGTTCCGTTCATTGCAGACATGCAACAAATC
TCATCATAATCATAATAGCCAGTCATCCAACGCGATTTCTCTCTGATCAC
TAACGAGAGGGAATCCGGTGAAGTCAATACTGggaatttacataatttat
ggATAATCTTTTTCACAATGCCAAACAATATCAATTTCTTTTCATCAATA
CCAAGTTCTTGTAGATCATGTCTCCCGCACAAAGCACTCACTGAAATGCC
GGGACCGAGAGCGCAGTACAACATAAAGACATCACGGAATTCAGGCAGAT
TCGTTTTATCTCTAGCAACAAAAGAGACGCATTCTTTCTGAAAAGCTTCA
TCGCGATACAAGCTAGAAATTTCTGGCTTCACTGCATACATGTTGGAATA
TAgaaaaatgggagtcaactcaAGAACGCCGTGAAAGACAAGCGTTTGAA
GGGCTGATCTGACCAAAGCAAGATCAACATTTGCAAGGGTTGCGATCTTC
TGCACATGATTGAAACCATCGATGTAAGGGAGAACTCTTTTAGCAGTTAG
ATTCCAATGTTGTGAATCGACAGCAGATTTACTCCAGTTGAATATAGGAA
CGTGATGATCAAGAACAAGAGGAGGCTCGATAGGCTGTGTGTTCACTTTG
AGGTAAATCGTGTTGCAATGATTGACAGGGATAGTACATTCACCGGTCGA
CCTGAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073845-exon-scaffold_98-1491911889:237005..238740 | TCONS_00073845-exon-scaffold_98-1491911889:237005..238740 | Clytia hemisphaerica | exon |
| TCONS_00073845-exon-scaffold_98-1510915933:237005..238740 | TCONS_00073845-exon-scaffold_98-1510915933:237005..238740 | Clytia hemisphaerica | exon |
| TCONS_00073845-exon-scaffold_98-1575043694:237005..238740 | TCONS_00073845-exon-scaffold_98-1575043694:237005..238740 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_98 | supercontig | scaffold_98:237005..238740 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009348 | NPR2 |
Blast
BLAST of TCONS_00073845 vs. Swiss-Prot (Human)
Match: NPRL2 (GATOR complex protein NPRL2 OS=Homo sapiens GN=NPRL2 PE=1 SV=2) HSP 1 Score: 209.149 bits (531), Expect = 6.773e-61 Identity = 101/251 (40.24%), Postives = 155/251 (61.75%), Query Frame = 1 Query: 4 FRSTGECTIPVNHCNTIYLKVNTQPIEPPLVLDHHVPIFNWSKSAVDSQHWNLTAKRVLPYIDGFNHVQKIATLANVDLALVRSALQTLVFHGVLELTPIFLYSNMYAVKPEISSLYRDEAFQKECVSFVARDKTNLPEFRDVFMLYCALGPGISVSALCGRHDLQELGIDEKKLILFGIVKKIIHKLCKFPVLTSPDSLSLVIREKSRWMTGYYDYDEICCMSAMNGTPITHDELNGITENEQQVVHIWK 756
++G CT+P++ NTI+LKV Q +PP+ ++ VP+F K + W+LT +++LPYIDGF H+QKI+ A+V+L LVR A+Q L+++GV+ L I YSN+Y P++ L D++ Q+ C+S+V + RDVF LYC+L PG +V L GRH Q +DE+KLI FG++K +I +L K+PV + + S +R TG + YDEICC + M ++ EL+ EN+ ++ WK
Sbjct: 139 LNASGRCTLPIDESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKISAEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTKQGHKRASLRDVFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYPVRVTREEQS----HPARLYTGCHSYDEICCKTGM-----SYHELDERLENDPNIIICWK 380
The following BLAST results are available for this feature:
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