Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073838
Unique NameTCONS_00073838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073838 ID=TCONS_00073838|Name=TCONS_00073838|organism=Clytia hemisphaerica|type=transcript|length=2723bp
CATCACACAGTTGATCATCACATAACGAACGTATGattaaatttaatttc
attCTCTATcataaattcacaaaaaaactataaatattacaaaaatgtaa
aagataaaaattagccaaatatcatttttcttttgctgAAACCAGGTTAT
ACTGAACCAATAACTAAGGTATTGCAAGTGATAGCATAAAAGAATTATTT
CACTTGATAGAAAATACAGTACTTATTATATTAATAAgtagttttttcaa
aaagtcactTTTCTTTATCACTTTGCTGTTGTTTATTGCAACTTTTTAAT
CAACTTAAACACATTTTACACAAGTGACAGACAGTGAGAAGATAATTtta
catttacaaaaaaaataggTATTTCAACCACCAACTAGGAAGTCTTCTTT
TTGACATAAACTTCTTTGGAAACAATGTCTTTGCATTTCATTGTAACAAA
CATTTTATCATCCTCAACGTGTCTTTCAATAGTAGCAATTGGTGTTTCTT
CATTCTCAAATCGCATCTCTTGAATAACTCTTCGTCCACTTGTTTCAAAT
ATTCGCCCAATTTCCTTTCGTCCTGATAAAGTACGATCAGGGACAAAATC
TTCATTTATTGCCATTGGATAAACAGCGTTTCGCATTGAAGTGTATGTTT
TCTTTGTTATGGTTTTCTTGTCATCAGATAAAACAAATTCAACATCAGCA
TTTGGCATTGTTGAAATCATTGTTCTAAGAAACCATCTTGCTTCACGACA
GACAAGAAATTTAtcgaaattttcatcttttgattgAAGGGACCACATTC
CATTGGCAAGGTCTTCCATTTTATAACTgttcaaaaatattaagaacaag
ctggatgcttttgagctggaaaaaaatatttctgaaacAGAATTAAGAAT
TTTAGAGTTAATTCCTAAAACAATTAACCCTACAGTATAACATAATTTTA
GACACCGCTAATGCAATACACTGTTtagtagtgtcgactgcgcacgccag
cgcacgcgtccaaacaattttccattgttttgattttagcgacagCAGGA
AACTTCACTGTCCCTGTAAAAAAGAACagccagcagagaaatggtaggta
aaaaacTCCTTTtaaatcataacttcttttcctttaaatgaatttttgtg
aaatcttccggagagatccataaaattatcattgatatcatattcaaata
tctaaatcattcccaaaccttccacagtactaaagtgcgcattgtTACCT
ACCGCCTCTGCAGTAAAGCACCATGGAGATTGCGAGACTGCTGAATGGTG
TATTCAAAATTCCAGAAAACATCAATTACTCACACAAATGAAATAGTTAA
CAACAAGCTATAATAACAAATTCACCTACACAGATAAATGAAGCTTTTGA
AGCCACTGAATCATTTTTAAATAGAACCCAACCCACTCTAAGAAGGACAC
TCCAATCACTCCAGATATTATTATCGAGAAACCTTCAAATAAATTGTTGA
TGGAATATACCTTGGAAGGACTAATTTCCTAAAATCCAAATTCAATGCGA
CTTACAAAACGCGCCTTTATCAATTcgcaactctgtccaccattttaaat
gagttaacaatagatccgAAAGGGCCCTCTCGTCAAGGAAGATCATTTGC
TTTGGTTGTCTGGCTTTGGTAAGTAGTAATGTTTTGGATTGTTTTcaatg
gaaaatggtaagaaacttaagtttacaagagtcatttagtttttgctggc
aaATAGAATGTCGGGCTCCTGGATGGCTTCCCTAACTGACATGGTGGACA
TATATCCCCAGTTTGCATGAAAGGGAATCGAGGGCTTGCTATAAAGTAGT
GACCTGTTGCCCACGTTTCAAGGGTCTTTGGAAAGATTGTTTGAACCAAG
ATACAAAATCATTCAGACAAACTGAGCAAAAACATGATCACCTTCTTTGC
CGAAGAATTTTTGTATTCCCAAggccataaaaatattttgttatcaaagG
CCAAAATAATAACATCTACATTATCCCCCAAGAGCAATtgaaaattgtct
ttttgattgGGCCAGGCCCAATATGTCATGATAACTTCCACTGATAGGGC
gcccttttttaacttttttgtttttatttaaaatgacCAGGtgctgattg
gagaattagaaaaCACCCGCCGCCATGCCACCTAATCGCCTATTGCCCGA
TGTGATAaacaaatagcgagtgtgtaacttgtaacttgttcattaactca
aatcaaatgactttggaggattggtgaaatggtggccgacttgccgtccc
atgttttgtcagatagtcccaagttagagcagttgacaatACTTAAAAGC
AATTAATATTAAGCACCCAAAAGCAGAGAGTCACCAGCTGTATTCCTTCA
AGCACACGTCTTGAACGCCTATCTCCAACTAGACGTTATCTTGCGATCGC
GGTGCATGCCTTTGTGGATCCGGGCTTTAGGCTATTTCTTTACATTCGCG
ATTGCttgaggaatttcaaaaattgaggtttttggtgggaaaatgataaa
aaggtTCCAATTTTAGCAACCGTCCGTCCGTCCATAgatgttattttaat
gaccagccaggtctttcatttgagggctatgcatgttagcctccactgat
gcaagttacccaatctcacggtattgaatatattgaatatatattttttt
gttgcaatgcagcaggataaccc
Run BLAST on NCBI

protein sequence of TCONS_00073838-protein

>TCONS_00073838-protein ID=TCONS_00073838-protein|Name=TCONS_00073838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MEDLANGMWSLQSKDENFDKFLVCREARWFLRTMISTMPNADVEFVLSDD
KKTITKKTYTSMRNAVYPMAINEDFVPDRTLSGRKEIGRIFETSGRRVIQ
EMRFENEETPIATIERHVEDDKMFVTMKCKDIVSKEVYVKKKTS
Run BLAST on NCBI

transcript from alignment at scaffold_98:121848..124570

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073838 ID=TCONS_00073838|Name=TCONS_00073838|organism=Clytia hemisphaerica|type=transcript|length=2723bp|location=Sequence derived from alignment at scaffold_98:121848..124570 (Clytia hemisphaerica)
gggttatcctgctgcattgcaacaaaaaaatatatattcaatatattcaa taccgtgagattgggtaacttgcatcagtggaggctaacatgcatagccc tcaaatgaaagacctggctggtcattaaaataacatcTATGGACGGACGG ACGGTTGCTAAAATTGGAacctttttatcattttcccaccaaaaacctca atttttgaaattcctcaaGCAATCGCGAATGTAAAGAAATAGCCTAAAGC CCGGATCCACAAAGGCATGCACCGCGATCGCAAGATAACGTCTAGTTGGA GATAGGCGTTCAAGACGTGTGCTTGAAGGAATACAGCTGGTGACTCTCTG CTTTTGGGTGCTTAATATTAATTGCTTTTAAGTattgtcaactgctctaa cttgggactatctgacaaaacatgggacggcaagtcggccaccatttcac caatcctccaaagtcatttgatttgagttaatgaacaagttacaagttac acactcgctatttgttTATCACATCGGGCAATAGGCGATTAGGTGGCATG GCGGCGGGTGttttctaattctccaatcagcaCCTGgtcattttaaataa aaacaaaaaagttaaaaaagggcGCCCTATCAGTGGAAGTTATCATGACA TATTGGGCCTGGCCcaatcaaaaagacaattttcaATTGCTCTTGGGGGA TAATGTAGATGTTATTATTTTGGCctttgataacaaaatatttttatggc cTTGGGAATACAAAAATTCTTCGGCAAAGAAGGTGATCATGTTTTTGCTC AGTTTGTCTGAATGATTTTGTATCTTGGTTCAAACAATCTTTCCAAAGAC CCTTGAAACGTGGGCAACAGGTCACTACTTTATAGCAAGCCCTCGATTCC CTTTCATGCAAACTGGGGATATATGTCCACCATGTCAGTTAGGGAAGCCA TCCAGGAGCCCGACATTCTATttgccagcaaaaactaaatgactcttgta aacttaagtttcttaccattttccattgAAAACAATCCAAAACATTACTA CTTACCAAAGCCAGACAACCAAAGCAAATGATCTTCCTTGACGAGAGGGC CCTTTcggatctattgttaactcatttaaaatggtggacagagttgcgAA TTGATAAAGGCGCGTTTTGTAAGTCGCATTGAATTTGGATTTTAGGAAAT TAGTCCTTCCAAGGTATATTCCATCAACAATTTATTTGAAGGTTTCTCGA TAATAATATCTGGAGTGATTGGAGTGTCCTTCTTAGAGTGGGTTGGGTTC TATTTAAAAATGATTCAGTGGCTTCAAAAGCTTCATTTATCTGTGTAGGT GAATTTGTTATTATAGCTTGTTGTTAACTATTTCATTTGTGTGAGTAATT GATGTTTTCTGGAATTTTGAATACACCATTCAGCAGTCTCGCAATCTCCA TGGTGCTTTACTGCAGAGGCGGTAGGTAacaatgcgcactttagtactgt ggaaggtttgggaatgatttagatatttgaatatgatatcaatgataatt ttatggatctctccggaagatttcacaaaaattcatttaaaggaaaagaa gttatgatttaAAAGGAgttttttacctaccatttctctgctggctGTTC TTTTTTACAGGGACAGTGAAGTTTCCTGctgtcgctaaaatcaaaacaat ggaaaattgtttggacgcgtgcgctggcgtgcgcagtcgacactactaAA CAGTGTATTGCATTAGCGGTGTCTAAAATTATGTTATACTGTAGGGTTAA TTGTTTTAGGAATTAACTCTAAAATTCTTAATTCTgtttcagaaatattt ttttccagctcaaaagcatccagcttgttcttaatatttttgaacAGTTA TAAAATGGAAGACCTTGCCAATGGAATGTGGTCCCTTcaatcaaaagatg aaaatttcgaTAAATTTCTTGTCTGTCGTGAAGCAAGATGGTTTCTTAGA ACAATGATTTCAACAATGCCAAATGCTGATGTTGAATTTGTTTTATCTGA TGACAAGAAAACCATAACAAAGAAAACATACACTTCAATGCGAAACGCTG TTTATCCAATGGCAATAAATGAAGATTTTGTCCCTGATCGTACTTTATCA GGACGAAAGGAAATTGGGCGAATATTTGAAACAAGTGGACGAAGAGTTAT TCAAGAGATGCGATTTGAGAATGAAGAAACACCAATTGCTACTATTGAAA GACACGTTGAGGATGATAAAATGTTTGTTACAATGAAATGCAAAGACATT GTTTCCAAAGAAGTTTATGTCAAAAAGAAGACTTCCTAGTTGGTGGTTGA AATAcctattttttttgtaaatgtaaAATTATCTTCTCACTGTCTGTCAC TTGTGTAAAATGTGTTTAAGTTGATTAAAAAGTTGCAATAAACAACAGCA AAGTGATAAAGAAAagtgactttttgaaaaaactacTTATTAATATAATA AGTACTGTATTTTCTATCAAGTGAAATAATTCTTTTATGCTATCACTTGC AATACCTTAGTTATTGGTTCAGTATAACCTGGTTTcagcaaaagaaaaat gatatttggctaatttttatcttttacatttttgtaatatttatagtttt tttgtgaatttatgATAGAGaatgaaattaaatttaatCATACGTTCGTT ATGTGATGATCAACTGTGTGATG

Coding sequence (CDS) from alignment at scaffold_98:121848..124570

>TCONS_00073838 ID=TCONS_00073838|Name=TCONS_00073838|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_98:121848..124570 (Clytia hemisphaerica)
ATGGAAGACCTTGCCAATGGAATGTGGTCCCTTcaatcaaaagatgaaaa
tttcgaTAAATTTCTTGTCTGTCGTGAAGCAAGATGGTTTCTTAGAACAA
TGATTTCAACAATGCCAAATGCTGATGTTGAATTTGTTTTATCTGATGAC
AAGAAAACCATAACAAAGAAAACATACACTTCAATGCGAAACGCTGTTTA
TCCAATGGCAATAAATGAAGATTTTGTCCCTGATCGTACTTTATCAGGAC
GAAAGGAAATTGGGCGAATATTTGAAACAAGTGGACGAAGAGTTATTCAA
GAGATGCGATTTGAGAATGAAGAAACACCAATTGCTACTATTGAAAGACA
CGTTGAGGATGATAAAATGTTTGTTACAATGAAATGCAAAGACATTGTTT
CCAAAGAAGTTTATGTCAAAAAGAAGACTTCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045856XLOC_045856Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073838-proteinTCONS_00073838-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073838-exon-scaffold_98-1491911889:121848..124570TCONS_00073838-exon-scaffold_98-1491911889:121848..124570Clytia hemisphaericaexon
TCONS_00073838-exon-scaffold_98-1510915933:121848..124570TCONS_00073838-exon-scaffold_98-1510915933:121848..124570Clytia hemisphaericaexon
TCONS_00073838-exon-scaffold_98-1575043694:121848..124570TCONS_00073838-exon-scaffold_98-1575043694:121848..124570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:121848..124570 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.6958 34.5809 12.3001 8.73373 12.1257 8.61437 8.37976 9.73987 9.92973 7.28351 7.23645 7.86511 4.06166 3.62146 5.8524 5.31528 8.73782 8.65375 3.14464 3.2491 11.0228 11.1075 34.2141 28.6009 4.29373 4.85275 7.91487 6.2462 15.3741 15.3872
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012674Calycin
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top