Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073838 ID=TCONS_00073838|Name=TCONS_00073838|organism=Clytia hemisphaerica|type=transcript|length=2723bp
CATCACACAGTTGATCATCACATAACGAACGTATGattaaatttaatttc
attCTCTATcataaattcacaaaaaaactataaatattacaaaaatgtaa
aagataaaaattagccaaatatcatttttcttttgctgAAACCAGGTTAT
ACTGAACCAATAACTAAGGTATTGCAAGTGATAGCATAAAAGAATTATTT
CACTTGATAGAAAATACAGTACTTATTATATTAATAAgtagttttttcaa
aaagtcactTTTCTTTATCACTTTGCTGTTGTTTATTGCAACTTTTTAAT
CAACTTAAACACATTTTACACAAGTGACAGACAGTGAGAAGATAATTtta
catttacaaaaaaaataggTATTTCAACCACCAACTAGGAAGTCTTCTTT
TTGACATAAACTTCTTTGGAAACAATGTCTTTGCATTTCATTGTAACAAA
CATTTTATCATCCTCAACGTGTCTTTCAATAGTAGCAATTGGTGTTTCTT
CATTCTCAAATCGCATCTCTTGAATAACTCTTCGTCCACTTGTTTCAAAT
ATTCGCCCAATTTCCTTTCGTCCTGATAAAGTACGATCAGGGACAAAATC
TTCATTTATTGCCATTGGATAAACAGCGTTTCGCATTGAAGTGTATGTTT
TCTTTGTTATGGTTTTCTTGTCATCAGATAAAACAAATTCAACATCAGCA
TTTGGCATTGTTGAAATCATTGTTCTAAGAAACCATCTTGCTTCACGACA
GACAAGAAATTTAtcgaaattttcatcttttgattgAAGGGACCACATTC
CATTGGCAAGGTCTTCCATTTTATAACTgttcaaaaatattaagaacaag
ctggatgcttttgagctggaaaaaaatatttctgaaacAGAATTAAGAAT
TTTAGAGTTAATTCCTAAAACAATTAACCCTACAGTATAACATAATTTTA
GACACCGCTAATGCAATACACTGTTtagtagtgtcgactgcgcacgccag
cgcacgcgtccaaacaattttccattgttttgattttagcgacagCAGGA
AACTTCACTGTCCCTGTAAAAAAGAACagccagcagagaaatggtaggta
aaaaacTCCTTTtaaatcataacttcttttcctttaaatgaatttttgtg
aaatcttccggagagatccataaaattatcattgatatcatattcaaata
tctaaatcattcccaaaccttccacagtactaaagtgcgcattgtTACCT
ACCGCCTCTGCAGTAAAGCACCATGGAGATTGCGAGACTGCTGAATGGTG
TATTCAAAATTCCAGAAAACATCAATTACTCACACAAATGAAATAGTTAA
CAACAAGCTATAATAACAAATTCACCTACACAGATAAATGAAGCTTTTGA
AGCCACTGAATCATTTTTAAATAGAACCCAACCCACTCTAAGAAGGACAC
TCCAATCACTCCAGATATTATTATCGAGAAACCTTCAAATAAATTGTTGA
TGGAATATACCTTGGAAGGACTAATTTCCTAAAATCCAAATTCAATGCGA
CTTACAAAACGCGCCTTTATCAATTcgcaactctgtccaccattttaaat
gagttaacaatagatccgAAAGGGCCCTCTCGTCAAGGAAGATCATTTGC
TTTGGTTGTCTGGCTTTGGTAAGTAGTAATGTTTTGGATTGTTTTcaatg
gaaaatggtaagaaacttaagtttacaagagtcatttagtttttgctggc
aaATAGAATGTCGGGCTCCTGGATGGCTTCCCTAACTGACATGGTGGACA
TATATCCCCAGTTTGCATGAAAGGGAATCGAGGGCTTGCTATAAAGTAGT
GACCTGTTGCCCACGTTTCAAGGGTCTTTGGAAAGATTGTTTGAACCAAG
ATACAAAATCATTCAGACAAACTGAGCAAAAACATGATCACCTTCTTTGC
CGAAGAATTTTTGTATTCCCAAggccataaaaatattttgttatcaaagG
CCAAAATAATAACATCTACATTATCCCCCAAGAGCAATtgaaaattgtct
ttttgattgGGCCAGGCCCAATATGTCATGATAACTTCCACTGATAGGGC
gcccttttttaacttttttgtttttatttaaaatgacCAGGtgctgattg
gagaattagaaaaCACCCGCCGCCATGCCACCTAATCGCCTATTGCCCGA
TGTGATAaacaaatagcgagtgtgtaacttgtaacttgttcattaactca
aatcaaatgactttggaggattggtgaaatggtggccgacttgccgtccc
atgttttgtcagatagtcccaagttagagcagttgacaatACTTAAAAGC
AATTAATATTAAGCACCCAAAAGCAGAGAGTCACCAGCTGTATTCCTTCA
AGCACACGTCTTGAACGCCTATCTCCAACTAGACGTTATCTTGCGATCGC
GGTGCATGCCTTTGTGGATCCGGGCTTTAGGCTATTTCTTTACATTCGCG
ATTGCttgaggaatttcaaaaattgaggtttttggtgggaaaatgataaa
aaggtTCCAATTTTAGCAACCGTCCGTCCGTCCATAgatgttattttaat
gaccagccaggtctttcatttgagggctatgcatgttagcctccactgat
gcaagttacccaatctcacggtattgaatatattgaatatatattttttt
gttgcaatgcagcaggataaccc Run BLAST on NCBI protein sequence of TCONS_00073838-protein >TCONS_00073838-protein ID=TCONS_00073838-protein|Name=TCONS_00073838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MEDLANGMWSLQSKDENFDKFLVCREARWFLRTMISTMPNADVEFVLSDD
KKTITKKTYTSMRNAVYPMAINEDFVPDRTLSGRKEIGRIFETSGRRVIQ
EMRFENEETPIATIERHVEDDKMFVTMKCKDIVSKEVYVKKKTS Run BLAST on NCBI transcript from alignment at scaffold_98:121848..124570 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073838 ID=TCONS_00073838|Name=TCONS_00073838|organism=Clytia hemisphaerica|type=transcript|length=2723bp|location=Sequence derived from alignment at scaffold_98:121848..124570 (Clytia hemisphaerica)
gggttatcctgctgcattgcaacaaaaaaatatatattcaatatattcaa
taccgtgagattgggtaacttgcatcagtggaggctaacatgcatagccc
tcaaatgaaagacctggctggtcattaaaataacatcTATGGACGGACGG
ACGGTTGCTAAAATTGGAacctttttatcattttcccaccaaaaacctca
atttttgaaattcctcaaGCAATCGCGAATGTAAAGAAATAGCCTAAAGC
CCGGATCCACAAAGGCATGCACCGCGATCGCAAGATAACGTCTAGTTGGA
GATAGGCGTTCAAGACGTGTGCTTGAAGGAATACAGCTGGTGACTCTCTG
CTTTTGGGTGCTTAATATTAATTGCTTTTAAGTattgtcaactgctctaa
cttgggactatctgacaaaacatgggacggcaagtcggccaccatttcac
caatcctccaaagtcatttgatttgagttaatgaacaagttacaagttac
acactcgctatttgttTATCACATCGGGCAATAGGCGATTAGGTGGCATG
GCGGCGGGTGttttctaattctccaatcagcaCCTGgtcattttaaataa
aaacaaaaaagttaaaaaagggcGCCCTATCAGTGGAAGTTATCATGACA
TATTGGGCCTGGCCcaatcaaaaagacaattttcaATTGCTCTTGGGGGA
TAATGTAGATGTTATTATTTTGGCctttgataacaaaatatttttatggc
cTTGGGAATACAAAAATTCTTCGGCAAAGAAGGTGATCATGTTTTTGCTC
AGTTTGTCTGAATGATTTTGTATCTTGGTTCAAACAATCTTTCCAAAGAC
CCTTGAAACGTGGGCAACAGGTCACTACTTTATAGCAAGCCCTCGATTCC
CTTTCATGCAAACTGGGGATATATGTCCACCATGTCAGTTAGGGAAGCCA
TCCAGGAGCCCGACATTCTATttgccagcaaaaactaaatgactcttgta
aacttaagtttcttaccattttccattgAAAACAATCCAAAACATTACTA
CTTACCAAAGCCAGACAACCAAAGCAAATGATCTTCCTTGACGAGAGGGC
CCTTTcggatctattgttaactcatttaaaatggtggacagagttgcgAA
TTGATAAAGGCGCGTTTTGTAAGTCGCATTGAATTTGGATTTTAGGAAAT
TAGTCCTTCCAAGGTATATTCCATCAACAATTTATTTGAAGGTTTCTCGA
TAATAATATCTGGAGTGATTGGAGTGTCCTTCTTAGAGTGGGTTGGGTTC
TATTTAAAAATGATTCAGTGGCTTCAAAAGCTTCATTTATCTGTGTAGGT
GAATTTGTTATTATAGCTTGTTGTTAACTATTTCATTTGTGTGAGTAATT
GATGTTTTCTGGAATTTTGAATACACCATTCAGCAGTCTCGCAATCTCCA
TGGTGCTTTACTGCAGAGGCGGTAGGTAacaatgcgcactttagtactgt
ggaaggtttgggaatgatttagatatttgaatatgatatcaatgataatt
ttatggatctctccggaagatttcacaaaaattcatttaaaggaaaagaa
gttatgatttaAAAGGAgttttttacctaccatttctctgctggctGTTC
TTTTTTACAGGGACAGTGAAGTTTCCTGctgtcgctaaaatcaaaacaat
ggaaaattgtttggacgcgtgcgctggcgtgcgcagtcgacactactaAA
CAGTGTATTGCATTAGCGGTGTCTAAAATTATGTTATACTGTAGGGTTAA
TTGTTTTAGGAATTAACTCTAAAATTCTTAATTCTgtttcagaaatattt
ttttccagctcaaaagcatccagcttgttcttaatatttttgaacAGTTA
TAAAATGGAAGACCTTGCCAATGGAATGTGGTCCCTTcaatcaaaagatg
aaaatttcgaTAAATTTCTTGTCTGTCGTGAAGCAAGATGGTTTCTTAGA
ACAATGATTTCAACAATGCCAAATGCTGATGTTGAATTTGTTTTATCTGA
TGACAAGAAAACCATAACAAAGAAAACATACACTTCAATGCGAAACGCTG
TTTATCCAATGGCAATAAATGAAGATTTTGTCCCTGATCGTACTTTATCA
GGACGAAAGGAAATTGGGCGAATATTTGAAACAAGTGGACGAAGAGTTAT
TCAAGAGATGCGATTTGAGAATGAAGAAACACCAATTGCTACTATTGAAA
GACACGTTGAGGATGATAAAATGTTTGTTACAATGAAATGCAAAGACATT
GTTTCCAAAGAAGTTTATGTCAAAAAGAAGACTTCCTAGTTGGTGGTTGA
AATAcctattttttttgtaaatgtaaAATTATCTTCTCACTGTCTGTCAC
TTGTGTAAAATGTGTTTAAGTTGATTAAAAAGTTGCAATAAACAACAGCA
AAGTGATAAAGAAAagtgactttttgaaaaaactacTTATTAATATAATA
AGTACTGTATTTTCTATCAAGTGAAATAATTCTTTTATGCTATCACTTGC
AATACCTTAGTTATTGGTTCAGTATAACCTGGTTTcagcaaaagaaaaat
gatatttggctaatttttatcttttacatttttgtaatatttatagtttt
tttgtgaatttatgATAGAGaatgaaattaaatttaatCATACGTTCGTT
ATGTGATGATCAACTGTGTGATG Coding sequence (CDS) from alignment at scaffold_98:121848..124570 >TCONS_00073838 ID=TCONS_00073838|Name=TCONS_00073838|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_98:121848..124570 (Clytia hemisphaerica)
ATGGAAGACCTTGCCAATGGAATGTGGTCCCTTcaatcaaaagatgaaaa
tttcgaTAAATTTCTTGTCTGTCGTGAAGCAAGATGGTTTCTTAGAACAA
TGATTTCAACAATGCCAAATGCTGATGTTGAATTTGTTTTATCTGATGAC
AAGAAAACCATAACAAAGAAAACATACACTTCAATGCGAAACGCTGTTTA
TCCAATGGCAATAAATGAAGATTTTGTCCCTGATCGTACTTTATCAGGAC
GAAAGGAAATTGGGCGAATATTTGAAACAAGTGGACGAAGAGTTATTCAA
GAGATGCGATTTGAGAATGAAGAAACACCAATTGCTACTATTGAAAGACA
CGTTGAGGATGATAAAATGTTTGTTACAATGAAATGCAAAGACATTGTTT
CCAAAGAAGTTTATGTCAAAAAGAAGACTTCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073838-exon-scaffold_98-1491911889:121848..124570 | TCONS_00073838-exon-scaffold_98-1491911889:121848..124570 | Clytia hemisphaerica | exon |
| TCONS_00073838-exon-scaffold_98-1510915933:121848..124570 | TCONS_00073838-exon-scaffold_98-1510915933:121848..124570 | Clytia hemisphaerica | exon |
| TCONS_00073838-exon-scaffold_98-1575043694:121848..124570 | TCONS_00073838-exon-scaffold_98-1575043694:121848..124570 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_98 | supercontig | scaffold_98:121848..124570 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012674 | Calycin |
Blast
The following BLAST results are available for this feature:
|
