|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073814 ID=TCONS_00073814|Name=TCONS_00073814|organism=Clytia hemisphaerica|type=transcript|length=9704bp transcript from alignment at scaffold_98:26989..52125- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073814 ID=TCONS_00073814|Name=TCONS_00073814|organism=Clytia hemisphaerica|type=transcript|length=25137bp|location=Sequence derived from alignment at scaffold_98:26989..52125- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00073814 vs. Swiss-Prot (Human)
Match: CHD9 (Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9 PE=1 SV=2) HSP 1 Score: 1164.06 bits (3010), Expect = 0.000e+0 Identity = 579/1037 (55.83%), Postives = 756/1037 (72.90%), Query Frame = 2
Query: 338 VEEYYVKYKGYSYLHCEWGTLEYLAKKDKRVPAKIKRYKQKRDSSYAYLNELDDEPFNPDYVEIDRVLDYTTTVDPVTNDTIDHYLVKWRGLPYEDSTWELKMNIDESVIQNFHEMKKPPPVEQRRFKPRPQEGDWVKELQSPMYKNGNRLHDYQLEGMNWLTFCWYKRINCILADEMGLGKTIQSISLLCAMKKYGIRGPFLVIAPLSTIGNWQREFETWTDINAIVYHGSAVSRNNIQQYEMYYKDEKGNSINDVYKFEAIITTYEIVLSANQFLCTIPFRCLIIDEAHRLKNQKCKLMEGLNNLKMEHRVLLTGTPLQNNVEELFSLLNFLEPTRFPSQGAFMFEFGNLKTEGQVEKLKQILKPMMLRRVKADVQTNIASKXXXXXXXXXXXXQKKFYRAILERNFSFLAKGSGYSNLPNLMNTMMELRKCCNHPFLIKGAREKISSDYSDPEQPDKQLTHLSGLIESSGKMVLIDKLLPKLKSGGHKILVFSQMIKVLDLIQEYLMEKQYQFERIDGGVQGNMRQAAIDRFCRPDSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQEKPVKVYRLICRNTYEREMFDRASLKLGLDKAVLGNMNQKEAS--GQKAMSKKEVEDLLKKGAYGAVMENDEDASNFCEEDIDQILQRRTQVIQIEGEGKGSTFSKASFVSDKAGLDVDIDDPDFWKKWAQKASIKLEDLEQDKQLIMAEPRKRKQTKRFGNIDGDALEMSDLDSDDEVYEPNKSKSKSSQYIERT-AWTRVECFKVEKLLLIYGWDRWQDITSQVQFKQEVRNNDVEGISRTILAYCFRFYKTDEKSKDFFTNLIDESVKNAPPKNEKFDITDQILGSAPPPKNGRGRKRNATTNPGRNALRRLTHQYSKPALIECGLDWL-TVDPDTLIIDSSYRKHLQQHCHKIMSRIRLIHSLKHDIIKEASVDIFEGKPHEEIEFTVPPAEGGELPAVWWDEKADKSLLIGTYKHGYEKYQQIRNDPCLYFYHKIGPYQMDEKA 3436
EE++VKYK YSYLHCEW T E L K DKR+ KIKR+K ++ + ++++EPFNPDYVE+DRVL+ + D T + + +YLVKW LPYEDSTWELK ++D + I+ F +++ P + RR RP W K QS YKNGN+L +YQLEG+NWL F WY R NCILADEMGLGKTIQSI+ L + GIRGPFL+IAPLSTI NW+REF TWTDIN +VYHGS +SR IQQYEMY++D +G I Y+F+AIITT+E++L L I +RC+IIDEAHRLKN+ CKL+EGL + +EH+VLLTGTPLQN VEELFSLL+FLEP RFPS+ FM EFG+LKTE QV+KL+ ILKPMMLRR+K DV+ +A KEETI+EVELT IQKK+YRAILE+NFSFL+KG+G +N+PNL+NTMMELRKCCNHP+LIKGA EKI ++ D P HL +I+S+GK+VLIDKLLPK+K+GGHK+L+FSQM++ LD++++YL+ K+Y +ERIDG V+GN+RQAAIDRF +PDSDRFVFLLCTRAGGLGINLTAADT IIFDSDWNPQNDLQAQARCHRIGQ K VKVYRL+ RN+YEREMFDRASLKLGLDKAVL +M+ +E++ G + +SKKE+EDLL++GAYGA+ME +++ S FCEEDIDQIL RRT+ I IE EG+GSTF+KASFV+ D+ +DDP+FW+KWA+KA I +E + L++ PR RKQT+ F + E+S+ +S+ + K K + +R+ + R ECF+VEK LL+YGW RW++I S +FK+++ +DVE I R +LAYC Y+ DEK K F +LI + + ++ + + SAP P+ +G+K T+ + +WL +P+ L+ D Y+KH++ HC+K++ R+R+++ LK ++I +F+G +I+ VP + E+PA WWD ADKSLLIG +KHGYEKY IR DP L F ++G + DEKA
Sbjct: 713 TEEFFVKYKNYSYLHCEWATEEQLLK-DKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRP-DTRRLD-RPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDIDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIEAISGRNSLVIDTPRIRKQTRPFSATKDELAELSEAESEGD------EKPKLRRPCDRSNGYGRTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKGFIWDLITPT-----EDGQTRELQNHLGLSAPVPRGRKGKKVKTQTS----------------SFDIQKAEWLRKYNPEQLLQDEGYKKHIKHHCNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHSEVPAEWWDFDADKSLLIGVFKHGYEKYNTIRADPALCFLERVG--KPDEKA 1717 HSP 2 Score: 152.525 bits (384), Expect = 2.850e-36 Identity = 72/156 (46.15%), Postives = 103/156 (66.03%), Query Frame = 3
Query: 3966 RKNTXDFYKVLSNFGVIQNPETKEYDWQKFRQLAKLDKKLDETLTHYYEDFIAMCRRICGRATENDEKRLKGCQIEEISEDKASRCLQRVKLLNKIRTQVLPHEKLGERLALCIKSYDLPHWWKSVKHDKALLQGVAKHGLGRTEYQVLLDPDSIF 4433
R+ DFY+V+S FGV+ +P+ ++DW KFR +A+L KK D++L Y F++MCRR+C R +E I+ I+E++ASR L R++LL K+R Q L H +L ERL LC + DLP WW+ HD+ LL G AKHG+ RT+Y +L DP+ F
Sbjct: 1840 RREEADFYRVVSTFGVVFDPDRGQFDWTKFRAMARLHKKTDDSLEKYLYAFMSMCRRVC-RLPSKEELVDPNIFIQPITEERASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGPHDRDLLIGAAKHGVSRTDYHILRDPELSF 1994 The following BLAST results are available for this feature:
BLAST of TCONS_00073814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.