TCONS_00073803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073803
Unique NameTCONS_00073803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073803 ID=TCONS_00073803|Name=TCONS_00073803|organism=Clytia hemisphaerica|type=transcript|length=609bp
ACAGATCACATTGACATTAtgttagaaaaatcaaaaactgatCAAAACAG
ACATGGTAATAAAGTTACTATTTCAGACATAGACAGCAATTGTTCGGTCA
AAGAAGTTCTTGATGATTACCTCACAAAGGCTAAACTGAAAGACGATTCA
GAAGCATACATCTTATGTAAAATGGTCAAGACGAAGGAAGGACATAAGGC
AATAGGACATCATAAAATCAGTTATACCACGGCAAGGAAAGAGTTCCTTA
GTTTGTTAAGTTCAGTCATGCCAATAACAGAAGATGTTAGGCAATTTTGT
ACACATTCCATGAGGTCAGGTGGAGCTACAGCAGCGATTAATAACGGAGT
GTCTGAAAGAGAGATTGATTTGCACGGGCGTTGGAAATCGGAAAAATCAC
GAAATAAATACTTAAAGGACAGTTTGAAGAGAAGACTTAAAATTACCCGT
TCTTTGGGAATTTAGACTCAATTTCATATCAACTGTACAATCCTTTGCTC
TTTGTATTCTCAGTGCTTGCAAAGACCCGTCCACcaaattataaagaaaa
cacTGTGTCTTTTCTTCTGTGGGTATGGGAGTCGGGAGTTTAGGGTGTGG
GAAGTTANN
Run BLAST on NCBI

transcript from alignment at scaffold_98:269534..270142+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073803 ID=TCONS_00073803|Name=TCONS_00073803|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at scaffold_98:269534..270142+ (Clytia hemisphaerica)
ACAGATCACATTGACATTAtgttagaaaaatcaaaaactgatCAAAACAG
ACATGGTAATAAAGTTACTATTTCAGACATAGACAGCAATTGTTCGGTCA
AAGAAGTTCTTGATGATTACCTCACAAAGGCTAAACTGAAAGACGATTCA
GAAGCATACATCTTATGTAAAATGGTCAAGACGAAGGAAGGACATAAGGC
AATAGGACATCATAAAATCAGTTATACCACGGCAAGGAAAGAGTTCCTTA
GTTTGTTAAGTTCAGTCATGCCAATAACAGAAGATGTTAGGCAATTTTGT
ACACATTCCATGAGGTCAGGTGGAGCTACAGCAGCGATTAATAACGGAGT
GTCTGAAAGAGAGATTGATTTGCACGGGCGTTGGAAATCGGAAAAATCAC
GAAATAAATACTTAAAGGACAGTTTGAAGAGAAGACTTAAAATTACCCGT
TCTTTGGGAATTTAGACTCAATTTCATATCAACTGTACAATCCTTTGCTC
TTTGTATTCTCAGTGCTTGCAAAGACCCGTCCACcaaattataaagaaaa
cacTGTGTCTTTTCTTCTGTGGGTATGGGAGTCGGGAGTTTAGGGTGTGG
GAAGTTANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045840XLOC_045840Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073803-exon-scaffold_98-1491911889:269534..270142TCONS_00073803-exon-scaffold_98-1491911889:269534..270142Clytia hemisphaericaexon
TCONS_00073803-exon-scaffold_98-1510915933:269534..270142TCONS_00073803-exon-scaffold_98-1510915933:269534..270142Clytia hemisphaericaexon
TCONS_00073803-exon-scaffold_98-1575043694:269534..270142TCONS_00073803-exon-scaffold_98-1575043694:269534..270142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:269534..270142 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.3189	20.4622	7.66716	4.70952	16.7664	10.4077	12.9333	21.8407	1.37484	2.78309	1.32965	1.91919	2.3348	1.43713	0.512934	1.78022	1.2454	1.58249	0	1.42498	2.70911	2.26764	3.8482	3.48728	9.60786	16.8655	1.76115	0.335346	0.259127	0.619975
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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