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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073800 ID=TCONS_00073800|Name=TCONS_00073800|organism=Clytia hemisphaerica|type=transcript|length=1165bp
CAAACGAGTTAACTCTTTATTGATACTCTTTGTTTCGGTAAGACGTAATT
AGGGCAAGCGGAATTCCCAAGAGATATCTCAAATCAGcttaatttgaaat
ataaaaaaagtggaTCTTTGTTGATGGGAAGTTATCAATCTATCTGACAA
GCAAGAGAAGAGAGGTGGCGCAAGATTGACGTGAGTAAAGACATAAGTTA
ATCAGCATGGGACTGTTCAAATGTTTGGTTGGGCTATCGTTGATAATTTT
GGTATCTGCTGgaaataacaacaacaacaacaacaacttaaACAATAATG
CTAATTTCTTCACCTTCCTAAATACCAACATCCAGTACACCTATTgTGGT
TGGCAAATAATGGATGCTTCATCGCAATTATGTTGCAATAACAATCTCTA
CTTTGCACAACCTTTCCAACGCTGCTGTGGGTCTACCACTTACAAAACCA
AATCTCAAAAGTGCTACCGTGGAAAAGCATACCCTCGCAAAGTTCGATGC
GGAAGAAATTACTACGATCCTAACACCGAATTCTGCGTCAATTACAAAGT
GTTCAACCGCAATGAGTATGGAGTTTGTCAAGGTTATATCTTGAGAAGGG
CAGCTCCTGAAGCTAAAGACTTTGCTTTCAATTCGGCTTTTCCAGTATTT
AGCAAACTTGATTAGTGTTATGTGTTCGTAGTTTATCATAGATacatgta
aaatttatgttatCAAAAGACCAACTGTTTATTGTTACTCAAATAACCCG
AATAATTATATTTTAATGATATATATAATGATAATGATAGTTATATGTTG
TTCCAgaaattttcacgcattcaaaCCGCTTGGGTCCCcatattaaaaca
aaatttttctataattaGTAATCTATGTCAGAGACTTAAGAACACTTTGA
AAAGCTTTGCAATttctaaaatatgcaatttcttaaAGGAATTGAACCAA
AATACTCACACAGTCGTGAAAATCACCCGTAGGCTTCAgaataatttgac
aaaaaaatatattcgtattctgattggtttagaaagCTTTAAGCACtgtt
aattgaaaatatatatCCTCTTGAATCTCcatcttcaattttcagttGAA
GATTGCTTGAATGATGCATGTATTGTCTGTATTGAAAACGTATGTGTGTG
caaaatcaaattgaa Run BLAST on NCBI protein sequence of TCONS_00073800-protein >TCONS_00073800-protein ID=TCONS_00073800-protein|Name=TCONS_00073800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MGLFKCLVGLSLIILVSAGNNNNNNNNLNNNANFFTFLNTNIQYTYCGWQ
IMDASSQLCCNNNLYFAQPFQRCCGSTTYKTKSQKCYRGKAYPRKVRCGR
NYYDPNTEFCVNYKVFNRNEYGVCQGYILRRAAPEAKDFAFNSAFPVFSK
LD Run BLAST on NCBI transcript from alignment at scaffold_98:231359..233462+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073800 ID=TCONS_00073800|Name=TCONS_00073800|organism=Clytia hemisphaerica|type=transcript|length=2104bp|location=Sequence derived from alignment at scaffold_98:231359..233462+ (Clytia hemisphaerica)
CAAACGAGTTAACTCTTTATTGATACTCTTTGTTTCGGTAAGACGTAATT
AGGGCAAGCGGAATTCCCAAGAGATATCTCAAATCAGcttaatttgaaat
ataaaaaaagtggaTCTTTGTTGATGGGAAGTTATCAATCTATCTGACAA
GCAAGAGAAGAGAGGTGGCGCAAGATTGACGTGAGTAAAGACATAAGTTA
ATCAGCATGGGACTGTTCAAATGTTTGGTTGGGCTATCGTTGATAATTTT
GGTATCTGCTGgaaataacaacaacaacaacaacaacttaaACAATAATG
CTAATTTCTTCACCTTCCTAAATACCAACATCCAGTACACCTATTGTAAG
TAAAAcgcctccttctcacagacccggtaggattttttcagccagtgggg
ataaaatgacggactgaaactcgattggGATTGGTATTTTATTGCTGGGG
ATttcagttcttttgtttttaagtcagtgGTAAAAATAGTAATTATTTTG
CAGTgatgattggtttatttgattatattCAGTGGGGACTAAAATTGGAG
GATCATTTTGGGAtcattttccaccggggacaacattttggccaattttt
cctgTGGGAAGGGTTCTAAGTGGGTCTGTGAGGTTGCTTTTCCTTAGAAT
TCTTTATAAGAAGCAGGGTCAATGTCGATTCCTAGCTTTGTCATTTATTT
TCCATCACCTCGTAAATACATATCGAACGTCACTATTTTTATGGGATGTT
TGTAATAATTTAGTTACCATaggtattgaaaataaatttttcaacttttt
aaggTGGTTGGCAAATAATGGATGCTTCATCGCAATTATGTTGCAATAAC
AATCTCTACTTTGCACAACCTTTCCAACGCTGCTGTGGGTGAGTCCGATT
GTTATTTTAACACCCGAAAACTTGATTCAAACCAATAGTAGAACAACTGC
CTTATAAATTTagcaaattttacttaaaagttAATTTTCCTATTCAAAGG
ATTTTGGGTATATAgttcgaagataaaaaattatccattgttttactcca
tatctaaaacttcgcaaaaaatcagtgatttttcaatggaattttcaaca
gtttactactgactGAAAAGGggtattttaatgtaaattaaagcataaat
agccattctaacaaattttggcgttatttacggccctaattggcgtaaac
CCAAAATCAGgttgtggcgtaataagggccggcgttaaagaggccggcgt
aaaaaggaccgATAAGGTATTATGAGTTCAAGCTTTCGATTCTCAAGTAA
ATCTTCTTGACTGCCGACGCTGTCTCGAACTGTAAGTGCAATTAACACCA
TTTCCTATTGTTTTCTAAGGTCTACCACTTACAAAACCAAATCTCAAAAG
TGCTACCGTGGAAAAGCATACCCTCGCAAAGTTCGATGCGGAAGAAATTA
CTACGATCCTAACACCGAATTCTGCGTCAATTACAAAGTGTTCAACCGCA
ATGAGTATGGAGTTTGTCAAGGTTATATCTTGAGAAGGGCAGCTCCTGAA
GCTAAAGACTTTGCTTTCAATTCGGCTTTTCCAGTATTTAGCAAACTTGA
TTAGTGTTATGTGTTCGTAGTTTATCATAGATacatgtaaaatttatgtt
atCAAAAGACCAACTGTTTATTGTTACTCAAATAACCCGAATAATTATAT
TTTAATGATATATATAATGATAATGATAGTTATATGTTGTTCCAgaaatt
ttcacgcattcaaaCCGCTTGGGTCCCcatattaaaacaaaatttttcta
taattaGTAATCTATGTCAGAGACTTAAGAACACTTTGAAAAGCTTTGCA
ATttctaaaatatgcaatttcttaaAGGAATTGAACCAAAATACTCACAC
AGTCGTGAAAATCACCCGTAGGCTTCAgaataatttgacaaaaaaatata
ttcgtattctgattggtttagaaagCTTTAAGCACtgttaattgaaaata
tatatCCTCTTGAATCTCcatcttcaattttcagttGAAGATTGCTTGAA
TGATGCATGTATTGTCTGTATTGAAAACGTATGTGTGTGcaaaatcaaat
tgaa Coding sequence (CDS) from alignment at scaffold_98:231359..233462+ >TCONS_00073800 ID=TCONS_00073800|Name=TCONS_00073800|organism=Clytia hemisphaerica|type=CDS|length=1377bp|location=Sequence derived from alignment at scaffold_98:231359..233462+ (Clytia hemisphaerica)
ATGGGACTGTTCAAATGTTTGGTTGGGCTATCGTTGATAATTTTGGTATC
TGCTGgaaataacaacaacaacaacaacaacttaaACAATAATGCTAATT
TCTTCACCTTCCTAAATACCAACATCCAGTACACCTATTgTGGTTGGCAA
ATAATGGATGCTTCATCGCAATTATGTTGCAATAACAATCTCTACTTTGC
ACAACCTTTCCAACGCTGCTGTGGGTCTACCACTTACAAAACCAAATCTC
AAAAGTGCTACCGTGGAAAAGCATACCCTCGCAAAGTTCGATGCGGAAGA
AATTACTACGATCCTAACACCGAATTCTGCGTCAATTACAAAGTGTTCAA
CCGCAATGAGTATGGAGTTTGTCAAGGTTATATCTTGAGAAGGGCAGCTC
CTGAAGCTAAAGACTTTGCTTTCAATTCGGCTTTTCCAGTATTTAGCAAA
CTTGATTAGATGGGACTGTTCAAATGTTTGGTTGGGCTATCGTTGATAAT
TTTGGTATCTGCTGgaaataacaacaacaacaacaacaacttaaACAATA
ATGCTAATTTCTTCACCTTCCTAAATACCAACATCCAGTACACCTATTgT
GGTTGGCAAATAATGGATGCTTCATCGCAATTATGTTGCAATAACAATCT
CTACTTTGCACAACCTTTCCAACGCTGCTGTGGGTCTACCACTTACAAAA
CCAAATCTCAAAAGTGCTACCGTGGAAAAGCATACCCTCGCAAAGTTCGA
TGCGGAAGAAATTACTACGATCCTAACACCGAATTCTGCGTCAATTACAA
AGTGTTCAACCGCAATGAGTATGGAGTTTGTCAAGGTTATATCTTGAGAA
GGGCAGCTCCTGAAGCTAAAGACTTTGCTTTCAATTCGGCTTTTCCAGTA
TTTAGCAAACTTGATTAGATGGGACTGTTCAAATGTTTGGTTGGGCTATC
GTTGATAATTTTGGTATCTGCTGgaaataacaacaacaacaacaacaact
taaACAATAATGCTAATTTCTTCACCTTCCTAAATACCAACATCCAGTAC
ACCTATTgTGGTTGGCAAATAATGGATGCTTCATCGCAATTATGTTGCAA
TAACAATCTCTACTTTGCACAACCTTTCCAACGCTGCTGTGGGTCTACCA
CTTACAAAACCAAATCTCAAAAGTGCTACCGTGGAAAAGCATACCCTCGC
AAAGTTCGATGCGGAAGAAATTACTACGATCCTAACACCGAATTCTGCGT
CAATTACAAAGTGTTCAACCGCAATGAGTATGGAGTTTGTCAAGGTTATA
TCTTGAGAAGGGCAGCTCCTGAAGCTAAAGACTTTGCTTTCAATTCGGCT
TTTCCAGTATTTAGCAAACTTGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073800-exon-scaffold_98-1491911889:231359..231703 | TCONS_00073800-exon-scaffold_98-1491911889:231359..231703 | Clytia hemisphaerica | exon |
| TCONS_00073800-exon-scaffold_98-1510915933:231359..231703 | TCONS_00073800-exon-scaffold_98-1510915933:231359..231703 | Clytia hemisphaerica | exon |
| TCONS_00073800-exon-scaffold_98-1575043694:231359..231703 | TCONS_00073800-exon-scaffold_98-1575043694:231359..231703 | Clytia hemisphaerica | exon |
| TCONS_00073800-exon-scaffold_98-1491911889:232162..232246 | TCONS_00073800-exon-scaffold_98-1491911889:232162..232246 | Clytia hemisphaerica | exon |
| TCONS_00073800-exon-scaffold_98-1510915933:232162..232246 | TCONS_00073800-exon-scaffold_98-1510915933:232162..232246 | Clytia hemisphaerica | exon |
| TCONS_00073800-exon-scaffold_98-1575043694:232162..232246 | TCONS_00073800-exon-scaffold_98-1575043694:232162..232246 | Clytia hemisphaerica | exon |
| TCONS_00073800-exon-scaffold_98-1491911889:232728..233462 | TCONS_00073800-exon-scaffold_98-1491911889:232728..233462 | Clytia hemisphaerica | exon |
| TCONS_00073800-exon-scaffold_98-1510915933:232728..233462 | TCONS_00073800-exon-scaffold_98-1510915933:232728..233462 | Clytia hemisphaerica | exon |
| TCONS_00073800-exon-scaffold_98-1575043694:232728..233462 | TCONS_00073800-exon-scaffold_98-1575043694:232728..233462 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_98 | supercontig | scaffold_98:231359..233462 + |
Blast
The following BLAST results are available for this feature:
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