TCONS_00073798 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073798
Unique NameTCONS_00073798
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1904

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073798 ID=TCONS_00073798|Name=TCONS_00073798|organism=Clytia hemisphaerica|type=transcript|length=1904bp
AGTAGGGTATGCTTCCACATTTGGGATCGAACGGAAAATGAAACATTgca
atcaaaaattgaaatggttCAGCAAACCATAACAGCAGTGTTACTAGATC
ATCCTGTCCTGTAGCTGTACCTACAACCTTTCTACAATTTCTTAGATTTT
TACACCAGAAGACAGACGAAATTTACCTTTACCATCTGACCATGGCAAAC
TCtaataattttgatttgatgGCTATTggcagacattgtggtgtggaTTC
CTGTAGAGTTTTGGATTATCTTCCCTTCAAAtgtgatttttgcaaaaatg
aatTTTGctTGTCACACAAGGACACTCATTCTTGCTCTGAAAAGATTGAT
AAAGATAGTACAATACCAGTTTGCCCACTTTGTCAGCAATACATTACCAa
aggaatcaatggtgctgacGATAACACCCAGGTTGAACGACATATACAAA
GTGGATGCAAGgataatgttttcaaaaaacgaAAGAAGAATAAGTGTTCT
TCACCCAACTGTCGACAAATCAATTTGATCCCATTTAATTGTGAACGTTG
CTATCAAAGCGTTTGTGTCAGGCACCGTCATCCAGGAGACCATCAATGCC
TCCATGCAAACAGTAACCGAAATCCTTGGGTCAAAGTTtggtgaaaaaaa
cttttctctctCGATTTGGTGTTATGATGTTGGTTCAAAACCGATGCTTG
GTGATAGTGTCGTAGTGTGACAGTCCTCGAAAGTGTTTCACTTTCAACGA
AAAGAGGAGGCTATGGAAACCTTGATTTCAAATGAAGAGAGACTCATTAC
CAACACCTGCCTTTTCATTGCATGTCTTCTGCTTATTGCAAACTAAATTG
TATGGGTGTCAAGAAATCACGTATAATATGCTGACCAGAATGCTGTTTTA
AACAATCCTATAATGTAATCAATTATatattgttttttgaataaaatagg
TCAATTTTTTACGGATTATGCTATAAATACTTCACTAAATATATTGTAAA
TCTCgatttttattcaatatattTGCCTTGTGAAAGGTAACAAATTTTTT
TCGCCTTTGGCTCAACCGTAACTATCTATCTTAGCAGAGACAACCTGATA
ATTGGCCATTATTCAGAATGAGGGGTAAGGGGAGGGGCGTTCTATTGATC
CCTAATCGAATGTTGATAAACAACGTGATCGTCTGTAAACTATTTgcaga
aagaaaacaaaaataactttttccaaaacacgAAGGTATttataaattgt
aaattttaaagtattttttgcTCGCTTTTGAGTAAATAGGGCAAAAGGAa
caaatatattttatcaacaggAAGTTAACAAGTTTAAATCTTAAAAGtta
gaagtatttctttttcattgtttttgtttcGTTTCCAACAGCATGCTAct
agttatgacgtcacaaacaaACGAAACAAACGTTTTAAACGCAATGACgt
caatgtttaaaattttatgttaCAGCAAACGagaaagctttttttttaag
ttcGGTGTATTGCGTCGGTATATTAAAAACGAAATAAATTATTTATGATA
AAATTAAGAGATTTGATAGCTATTTACATTGAGgtataaaaagttgaata
tagAGGTCAAGCTAGCAGGAATGCAATAATCATATGTACAAAAAGAATGC
TCGTTGCAGGTGAAATTCTCAACGATGCACtctcaaataaattaaaatcc
ATTCTCGTCACTTCTCCTTCTGTAACAGTGATATTTTTCCATTGAGTAAA
ATAACCGTCAGCCGAAACTTCGAGCTGATAGTTTCCAGGCAACAATAATC
GCCAATATTCCCCAGTTCTccatgttttgatttcttttgttcgATCGTGG
ATTAGAATCTTTGCACCTTCGATTGGTTCATGGTCATGTGTCAGAACAAC
Ccct
Run BLAST on NCBI

protein sequence of AN1 type zinc finger protein

>TCONS_00073798-protein ID=TCONS_00073798-protein|Name=AN1 type zinc finger protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MANSNNFDLMAIGRHCGVDSCRVLDYLPFKCDFCKNEFCLSHKDTHSCSE
KIDKDSTIPVCPLCQQYITKGINGADDNTQVERHIQSGCKDNVFKKRKKN
KCSSPNCRQINLIPFNCERCYQSVCVRHRHPGDHQCLHANSNRNPWVKVW
Run BLAST on NCBI

transcript from alignment at scaffold_98:217476..223794+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073798 ID=TCONS_00073798|Name=TCONS_00073798|organism=Clytia hemisphaerica|type=transcript|length=6319bp|location=Sequence derived from alignment at scaffold_98:217476..223794+ (Clytia hemisphaerica)
AGTAGGGTATGCTTCCACATTTGGGATCGAACGGAAAATGAAACATTgca atcaaaaattgaaatggttCAGCAAACCATAACAGCAGTGTTACTAGATC ATCCTGTCCTGTAGCTGTACCTACAACCTTTCTACAATTTCTTAGGTAAA TGGCTGATCATGGTTGAAAATGACGACGTCGCACAATAGACCTTTTCGCC TTTCCACCCGCCATCTTGAATTGTATgcaaaaatagaggaacgaaaaagc cgtggttggatttagttggaaaatatgcaaaacatatgcaagtttacaca aagattaaaaagacaacaaaccatcttataaagaaatatcataatcatta gaacaataaaagatggaatttcttaatccaaaaagaaatatttacagaac aacaaaagccttttagaaatttgttcttaaagacattgcatattctgttt tcctgccattaaaaaatttgaccaagacggagtacacacatcaaactttc aaaacacgcaaactgaaagcagtgattatgacgtcacacattcagagggt tcagatcaatgttttgatttgattgtctgacggttctattcccaggagaa taatttagcGTCAGTCGAATAAGGATAATTttgtaccttcgcgggtgatt tttcagcttgagtttatgtctaatgttatggttttttgaagtgcttgttc taagagatgagcgaatttgattatttgtagttttcaaaagaagcaaattt aatctttcttctacaagattacactttaatataatgccaattatgcatgt accGTGAGTgctcctaaatccgacagccctgcctaaatccgatggggtct ttcaaagatacaacctgaaataaaaacaaacctttcgctgtgacgcaaca aagataccaaagtgtcaactaaactgagagatttgatacactgaaccaat tgaaccaaaacattagttgcttcttatacaaaacataatttttcattaca aaattgttaacgttttaaacacaagcaacggattcagaataatagaggta attacttttacaactcacacttttttatcacattcattgaccactcacgg taagttttatattaatactttctttttgcatatgttttgcatactttcta agggaatttcaccacggcaattcggccaccataattgggctcttccagaa aaaatttgatatagGGGGTGGATGACgggaattttcagataaaaaaagca ctcggaaatccagtcaatttttcaaagtgcttcGGAAATTctgctcaatt ttttatttcaacccttggaaattccacgtaatttgtcaaagttttgaaaa aggtatcagaaattccagatttttccaccaaaaaattgattttgtatcgg aaatccaggagtttcaattgcttttgtattggaaatccaggaatttcaaa aaaacattttgcctcGGAATTCCGCTGTCGTCCACCCCCCTATAACGGAC TTtaactggaagagcccatttttgcatacaatagaccttttttcaaagag gccaccctgttgaataattatgtagtccagcagaaaaacaatgataaaac catgcataattattacaatatgcaNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNatgcatgatacagtaattatgcatggctctatcattgtttt tatggctggactacataattattcaacaggacgtcctctttgaaaaaagg tctattcaatatggcggatggaaaggcgaaaagaaGGTCTGTTTACCAGG TTTTAACTATCCAACCTAACATTGTACCCAGAGCAGTCTATTACGCAAAA ACTACTGCTAAAGGCGCCGTGATATAGTGATCATTGACCTTGGCTTGGAC TtagttgctgcacaggcgactgctGAGGACGCGAGGTTCGATTCCCCCAc ttgcagcggttcacttggtaAGTGAATGAAGCTTTGCCTGGTTGAACCCA TGCCATGTCAGGGGAATTGGgaagtcagttcaaggtgctgacggggcact aattgaaagcgtctatagttgcgaaaatgggcctGAAAGAGAAGCTTCCT GTAACTCAAACTCAACCAAatacaaataatagaaatagtTAAATAGAAAA GGCTACTTGGAATGGAATGGAGTATTGACTACATAAATGTAGGCATTGTG AGAGATTGCTGTCCTGGTAAATATTTGGAAATACCCAGCATTTAATGGAA AGATCTGGAAAGATCTTTTCCTTCGGTCACGTTCTCGCCGGAGAAGCTTG TACCTCGCAGCTTTgctctaccattttgaaaaagttgttttcGTGTGTCT CGCTTGCTCAATCATTTCTCCAATAGTTTCCTTGGTCTTGCAAAAGGCAG CGAAGACaaaattccagatttttcgaagtcgaaagtgaaagtgctttGTC ATCTTTTACAGTcaacataaaataaaattttttaatcgaCATCTCATTCA AAGATTTTTACACCAGAAGACAGACGAAATTTACCTTTACCATCTGACCA TGGCAAACTCtaataattttgatttgatgGCTATTggcagacattgtggt gtggaTTCCTGTAGAGTTTTGGATTATCTTCCCTTCAAAtgtgatttttg caaaaatgaatTTTGGTAAGAAAGAGTATAATTTTGAGCCTTAGCTAGGT acttttttcatatatttttgacaggtttagttgacacttttgtagagtta atttttcaattcagtTATTGTTGTTTACTcagctattttttttcaaaaag agaaCAAATTACAAATGATGTTCCATCCTTTATCTGTCACTTCTAAcctc ttcttctttctctttttttcagctTGTCACACAAGGACACTCATTCTTGC TCTGAAAAGATTGATAAAGATGTAAGCATACTtcaactaaagtctgtctc agcCTCAAAACCTTTTACCGTCAACTGATCTAGCTAACTTGGCACAATtc gtcgaaacatgggactgtatGATATCTTgccctgtattttcacttactgt taaaactctttgacaacaaatttgttttgataactccaccaagtttatca atcatacttttcatgacgtcagcagtttatATAATTATTTATCTATTATT ATTTAATCATTTTATCactaggaaattttttgaaatggcTGTATCTCTTG ATGAAGAAAAggcttttaaaaaattttaagtcTTATAGGCTGTAAAGCGC GCCACAAATTAAATCTTTTGGAAACAGGGCGCCATTttgtaattatgacg tcatcatgtTCCTTTACGTCAtgtaaattttggttgaaaagatattcaac tttATAGATTTCCAAAAATCTAACTGCTTCCTCTATATAATTTGGGGTCA CTTTTTAAAAGTGCCGACATCATCAAATTTAGGAGGactaaaaaaatttt aagttgaataaaagttagaaaaacttgtaaaatttcaaggcaGTAGCTCT AAGTAGGGCTTTTGTCCCCCGTGCTAAATAGGGTTATAAACATATAGTGC AGAAAGGGGTCTGAtacccccttcttaaatgatcccccttcttggcatta ccccaacctttaaaaataccTATCCCCTAAGGatttcagacaaaaaatta gctaacaaatatatgtgaaatatcttaAGAGAGAGAAAGcaaaataataa acttctttcttcttattGACTCaaacagaaaactttttttcatgaagacc aaatttcataacagtgcttgaaaataatctacaatatatataATTAAGTT CCCCACTTCTCAAACTACCCCCTTCTTAAACTACCCCTTTCCCCTTCCTT GATATCCttcctttttcatgaaaatttctgacccccccccctttatcaTT CTTTGGAAGGTGTCAAGGGGGGAACAAACTACAAACTCTGTCTTGGTATT TAACACCCTTGCAATTAGGAAGACCACTGAGTctcatttagttttttttt caagtggaGTTTGTTGGAATGCAGACTAGCAAATTTGTGTAATCTTTGCC TTTATAGGTCAACACAAATTTACTGACTCGAcatttaaactttgaaaaaa taaccattttccACAATATTTGCTGCTTTTTATCTTAATTACCCTACTGA TAGAGCTACTTCTTTGTcaacaaatttcttttgtttaatcaAGGAAATCA AAAGGGCAAATAATAATTGCATAATAAATGCATTAATTCAGTGTTTCCAT ATTATTATAAAGCTTCGTTTATTTCATTCAGAGTACAATACCAGTTTGCC CACTTTGTCAGCAATACATTACCAaaggaatcaatggtgctgacGATAAC ACCCAGGTATTTTGAGGTTTCCTATTTTAAGACATAACAAAcactttaaa aatatatattaaaagAAGACATTTTTAATTACAACGAAAAGTTGTCAATA TCTTGTAAGCTATgaggataaaattttgaataaagaaaatCCTAGCTCTT TGATGCTTTAACTttaattccattcctatcattCCCTTCAGGTTGAACGA CATATACAAAGTGGATGCAAGgataatgttttcaaaaaacgaAAGAAGAA TAAGTGTTCTTCACCCAACTGTCGACAAATCAATTTGATCCCATTTAATT GTGAACGTTGCTATCAAAGCGTTTGTGTCAGGTACGAGTTGATTTTCTAA AAGGACAATAGATTGATAATAGATAAAAGGTATTCCATGGCAATATAAAA AGTTATAGATAGATGTTTGAAGACCGTTTTAAAACTAATTAACAGgaata tttcttttataaatgTTGTATTTTGTGTGAATATTCTGCATTAGTTCAAT ATGAATTTcatgtttgttattgtttcttGATTCTAGGCACCGTCATCCAG GAGACCATCAATGCCTCCATGCAAACAGTAACCGAAATCCTTGGGTCAAA GTTtggtgaaaaaaacttttctctctCGATTTGGTGTTATGATGTTGGTT CAAAACCGATGCTTGGTGATAGTGTCGTAGTGTGACAGTCCTCGAAAGTG TTTCACTTTCAACGAAAAGAGGAGGCTATGGAAACCTTGATTTCAAATGA AGAGAGACTCATTACCAACACCTGCCTTTTCATTGCATGTCTTCTGCTTA TTGCAAACTAAATTGTATGGGTGTCAAGAAATCACGTATAATATGCTGAC CAGAATGCTGTTTTAAACAATCCTATAATGTAATCAATTATatattgttt tttgaataaaataggTCAATTTTTTACGGATTATGCTATAAATACTTCAC TAAATATATTGTAAATCTCgatttttattcaatatattTGCCTTGTGAAA GGTAACAAATTTTTTTCGCCTTTGGCTCAACCGTAACTATCTATCTTAGC AGAGACAACCTGATAATTGGCCATTATTCAGAATGAGGGGTAAGGGGAGG GGCGTTCTATTGATCCCTAATCGAATGTTGATAAACAACGTGATCGTCTG TAAACTATTTgcagaaagaaaacaaaaataactttttccaaaacacgAAG GTATttataaattgtaaattttaaagtattttttgcTCGCTTTTGAGTAA ATAGGGCAAAAGGAacaaatatattttatcaacaggAAGTTAACAAGTTT AAATCTTAAAAGttagaagtatttctttttcattgtttttgtttcGTTTC CAACAGCATGCTActagttatgacgtcacaaacaaACGAAACAAACGTTT TAAACGCAATGACgtcaatgtttaaaattttatgttaCAGCAAACGagaa agctttttttttaagttcGGTGTATTGCGTCGGTATATTAAAAACGAAAT AAATTATTTATGATAAAATTAAGAGATTTGATAGCTATTTACATTGAGgt ataaaaagttgaatatagAGGTCAAGCTAGCAGGAATGCAATAATCATAT GTACAAAAAGAATGCTCGTTGCAGGTGAAATTCTCAACGATGCACtctca aataaattaaaatccATTCTCGTCACTTCTCCTTCTGTAACAGTGATATT TTTCCATTGAGTAAAATAACCGTCAGCCGAAACTTCGAGCTGATAGTTTC CAGGCAACAATAATCGCCAATATTCCCCAGTTCTccatgttttgatttct tttgttcgATCGTGGATTAGAATCTTTGCACCTTCGATTGGTTCATGGTC ATGTGTCAGAACAACCcct

Coding sequence (CDS) from alignment at scaffold_98:217476..223794+

>TCONS_00073798 ID=TCONS_00073798|Name=TCONS_00073798|organism=Clytia hemisphaerica|type=CDS|length=2265bp|location=Sequence derived from alignment at scaffold_98:217476..223794+ (Clytia hemisphaerica)
ATGGCAAACTCtaataattttgatttgatgGCTATTggcagacattgtgg
tgtggaTTCCTGTAGAGTTTTGGATTATCTTCCCTTCAAAtgtgattttt
gcaaaaatgaatTTTGctTGTCACACAAGGACACTCATTCTTGCTCTGAA
AAGATTGATAAAGATAGTACAATACCAGTTTGCCCACTTTGTCAGCAATA
CATTACCAaaggaatcaatggtgctgacGATAACACCCAGGTTGAACGAC
ATATACAAAGTGGATGCAAGgataatgttttcaaaaaacgaAAGAAGAAT
AAGTGTTCTTCACCCAACTGTCGACAAATCAATTTGATCCCATTTAATTG
TGAACGTTGCTATCAAAGCGTTTGTGTCAGGCACCGTCATCCAGGAGACC
ATCAATGCCTCCATGCAAACAGTAACCGAAATCCTTGGGTCAAAGTTtgg
tgaATGGCAAACTCtaataattttgatttgatgGCTATTggcagacattg
tggtgtggaTTCCTGTAGAGTTTTGGATTATCTTCCCTTCAAAtgtgatt
tttgcaaaaatgaatTTTGctTGTCACACAAGGACACTCATTCTTGCTCT
GAAAAGATTGATAAAGATAGTACAATACCAGTTTGCCCACTTTGTCAGCA
ATACATTACCAaaggaatcaatggtgctgacGATAACACCCAGGTTGAAC
GACATATACAAAGTGGATGCAAGgataatgttttcaaaaaacgaAAGAAG
AATAAGTGTTCTTCACCCAACTGTCGACAAATCAATTTGATCCCATTTAA
TTGTGAACGTTGCTATCAAAGCGTTTGTGTCAGGCACCGTCATCCAGGAG
ACCATCAATGCCTCCATGCAAACAGTAACCGAAATCCTTGGGTCAAAGTT
tggtgaATGGCAAACTCtaataattttgatttgatgGCTATTggcagaca
ttgtggtgtggaTTCCTGTAGAGTTTTGGATTATCTTCCCTTCAAAtgtg
atttttgcaaaaatgaatTTTGctTGTCACACAAGGACACTCATTCTTGC
TCTGAAAAGATTGATAAAGATAGTACAATACCAGTTTGCCCACTTTGTCA
GCAATACATTACCAaaggaatcaatggtgctgacGATAACACCCAGGTTG
AACGACATATACAAAGTGGATGCAAGgataatgttttcaaaaaacgaAAG
AAGAATAAGTGTTCTTCACCCAACTGTCGACAAATCAATTTGATCCCATT
TAATTGTGAACGTTGCTATCAAAGCGTTTGTGTCAGGCACCGTCATCCAG
GAGACCATCAATGCCTCCATGCAAACAGTAACCGAAATCCTTGGGTCAAA
GTTtggtgaATGGCAAACTCtaataattttgatttgatgGCTATTggcag
acattgtggtgtggaTTCCTGTAGAGTTTTGGATTATCTTCCCTTCAAAt
gtgatttttgcaaaaatgaatTTTGctTGTCACACAAGGACACTCATTCT
TGCTCTGAAAAGATTGATAAAGATAGTACAATACCAGTTTGCCCACTTTG
TCAGCAATACATTACCAaaggaatcaatggtgctgacGATAACACCCAGG
TTGAACGACATATACAAAGTGGATGCAAGgataatgttttcaaaaaacga
AAGAAGAATAAGTGTTCTTCACCCAACTGTCGACAAATCAATTTGATCCC
ATTTAATTGTGAACGTTGCTATCAAAGCGTTTGTGTCAGGCACCGTCATC
CAGGAGACCATCAATGCCTCCATGCAAACAGTAACCGAAATCCTTGGGTC
AAAGTTtggtgaATGGCAAACTCtaataattttgatttgatgGCTATTgg
cagacattgtggtgtggaTTCCTGTAGAGTTTTGGATTATCTTCCCTTCA
AAtgtgatttttgcaaaaatgaatTTTGctTGTCACACAAGGACACTCAT
TCTTGCTCTGAAAAGATTGATAAAGATAGTACAATACCAGTTTGCCCACT
TTGTCAGCAATACATTACCAaaggaatcaatggtgctgacGATAACACCC
AGGTTGAACGACATATACAAAGTGGATGCAAGgataatgttttcaaaaaa
cgaAAGAAGAATAAGTGTTCTTCACCCAACTGTCGACAAATCAATTTGAT
CCCATTTAATTGTGAACGTTGCTATCAAAGCGTTTGTGTCAGGCACCGTC
ATCCAGGAGACCATCAATGCCTCCATGCAAACAGTAACCGAAATCCTTGG
GTCAAAGTTtggtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045837XLOC_045837Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073798-exon-scaffold_98-1491911889:217476..217620TCONS_00073798-exon-scaffold_98-1491911889:217476..217620Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1510915933:217476..217620TCONS_00073798-exon-scaffold_98-1510915933:217476..217620Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1575043694:217476..217620TCONS_00073798-exon-scaffold_98-1575043694:217476..217620Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1491911889:220079..220240TCONS_00073798-exon-scaffold_98-1491911889:220079..220240Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1510915933:220079..220240TCONS_00073798-exon-scaffold_98-1510915933:220079..220240Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1575043694:220079..220240TCONS_00073798-exon-scaffold_98-1575043694:220079..220240Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1491911889:220448..220496TCONS_00073798-exon-scaffold_98-1491911889:220448..220496Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1510915933:220448..220496TCONS_00073798-exon-scaffold_98-1510915933:220448..220496Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1575043694:220448..220496TCONS_00073798-exon-scaffold_98-1575043694:220448..220496Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1491911889:221857..221931TCONS_00073798-exon-scaffold_98-1491911889:221857..221931Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1510915933:221857..221931TCONS_00073798-exon-scaffold_98-1510915933:221857..221931Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1575043694:221857..221931TCONS_00073798-exon-scaffold_98-1575043694:221857..221931Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1491911889:222117..222256TCONS_00073798-exon-scaffold_98-1491911889:222117..222256Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1510915933:222117..222256TCONS_00073798-exon-scaffold_98-1510915933:222117..222256Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1575043694:222117..222256TCONS_00073798-exon-scaffold_98-1575043694:222117..222256Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1491911889:222462..223794TCONS_00073798-exon-scaffold_98-1491911889:222462..223794Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1510915933:222462..223794TCONS_00073798-exon-scaffold_98-1510915933:222462..223794Clytia hemisphaericaexon
TCONS_00073798-exon-scaffold_98-1575043694:222462..223794TCONS_00073798-exon-scaffold_98-1575043694:222462..223794Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
AN1 type zinc finger proteinTCONS_00073798-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:217476..223794 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.29686 5.68058 5.95469 6.32305 1.43829 1.43061 1.30932 2.09123 2.64374 5.9855 42.8885 14.3642 9.96353 3.47099 4.70454 2.86859 1.46406 1.58505 32.0872 81.0674 3.71313 11.0972 5.13833 5.29206 6.33518 10.6164 45.8434 167.203 31.224 18.5234
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000058Znf_AN1
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
BLAST of TCONS_00073798 vs. Swiss-Prot (Human)
Match: ZFN2B (AN1-type zinc finger protein 2B OS=Homo sapiens GN=ZFAND2B PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.277e-18
Identity = 49/130 (37.69%), Postives = 67/130 (51.54%), Query Frame = 3
Query:  225 IGRHCGVDSCRVLDYLPFKCDFCKNEFCLSHKD--THSCSEKIDKDSTIPVCPLCQQYITKGINGADDNTQVERHIQSGCXXXXXXXXX---XXXCSSPNCRQINLIPFNCERCYQSVCVRHRHPGDHQC 599
            +G HC   SC+ LD+LP KCD C   FC  H     H C     KD  +PVCPLC   +     G   +  V  HI   C+ +  ++++    NKC    CRQ  ++   CERC ++ C++HRHP DH C
Sbjct:    6 LGAHCSEPSCQRLDFLPLKCDACSGIFCADHVAYAQHHCGSAYQKDIQVPVCPLCNVPVPVA-RGEPPDRAVGEHIDRDCRSDPAQQKRKIFTNKCERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDC 134          
The following BLAST results are available for this feature:
BLAST of TCONS_00073798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZFN2B3.277e-1837.69AN1-type zinc finger protein 2B OS=Homo sapiens GN... [more]
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