Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073797 ID=TCONS_00073797|Name=TCONS_00073797|organism=Clytia hemisphaerica|type=transcript|length=1774bp
atcattttgacaaaatgaaagaaatttaaagtataagaaagaaaataaga
CAAGTGTCAGCGCAAAGGTCACTTCATCAAAAATACTTTTCCAATGTTTG
ATTTCAATACCGAAATGTGAACTTGTAAATATTTCTGCTTGGATTTCAAG
TCAACTTGGTGAAAGGAATTCAAGTTCATAATTCATTTGGCAATAATTTT
CACGCAGTAAAGATGGTCTTCAAACCCTTACTGATAGTTTTGTTCCTGGT
GACAAATTTGAGATGTGAAAATCTTTTCCAAGATGCTTTGGACTACGAAA
TAAGCGTCCTGTCTTGGCCGTATAATGAACAAAACAAGGACATCCTGAGC
GAAGAAAACCTCCTTGAATGGAACCCTGTTATCATTGCTATCCAAAACAT
TACAAAAGGAGAATACAGAGAACTGCGACAAGCAAACGATCTGTTGGCAA
CTAACTACGAGGAGTCTGGGATCGACAGTCTATGTATGAAGGgtgctgat
gacgtcatttgtaACCCGATCCTTTACAAAGGCGATCGATTTGAACAGGT
GGATGATGAAGAGGTTTTCACTGGAGTAAATCGGACAAAATTCGGACAAG
TCTCATGGACACAACTAAAGATGCACGGCAATCTTGAAAACCGAAAAAAG
AGAGATTTTCCATCTGAAATAGGTAAAGGGTTTGAAGGATTGTTCAAAAT
GTTGGGCGATGTTGAGGACAGTGAAGAAAACAAGGATGAGTGTAAAAATC
AACCGGGCGCTGTCTTCTTCTTGAACGGGAATCTAAAGGAAGGTGAGCAA
GCTGGAAAGGACTTCGAAAAAGTTCTTACATACATCTACTCTAACTTGAT
GTGTCGGCGTGTAAAGCGAACCATTCTTGTCGGAAATATCGGTTGGAAGC
ACAGCCAAGACGTCATCGGGAAATTCCGTCGTGGATTCTTCGAACACACC
TCGACAAGCTTCTCAAACGTCAATCAaatttggtcacatgacttcAACAG
AATTACGGGGACAGATTCAGATATCGTGGAGTATGATGGGAAGGATGCTA
AGCAACAAATCAAAGAGCGATTCATAGCACCATCGTTCGTTGCTTTCCAT
CACTCGATGATCAAAAATATAGGCAAAACGTCcgaaatttgaaacaaaac
gtccgaaaaatacaaatttggaTTTCCCTTGAAAACATTAAAGGAAACAT
TATCAACAATTGGATTTTAAGAATACATCTTATGTAATGTTTTAAAGTAA
TTATGAAAAAGATACCTAATTATATACAAAAGAGGATAAAAAATATGCGC
ATGGTAAAAATGATTTATGTAAAATAAAGAAACTTACTATCCATCGGAat
tctcttcttcttcattttccagCGTTTCTGTTTTCCGGAACAACcctaaa
attttctcttttaaagTTCGTTTTTCCTTGACCTCTTCAACTTGAAAAGT
CCGTGTTGTTAAATTATAAATAGATCCGAACCCGATTGCAATGACGGTAC
ACGTCAGACAAATGACGTTGTAGGGCATACTAAAATCGGGTAACGGTATC
CGAAGGAGTAAAGGTTCGGAATAAATACGTCGGAAAACCATTTCATCACT
GGTCGTACCAAATCTATGAAAAATAAGAGTTAGGTTGAACAAATGTGAAT
TTACTCCCTCCTAAACTTGATACACGCTTTTTTTATAAGAATAGTGTACT
TTGGCTGAGGGTGAGCATTATTTTTATTTTTCTATTGTTCTAAACAATAG
GCCTATTGTTCTAACTCTGAAATC Run BLAST on NCBI protein sequence of TCONS_00073797-protein >TCONS_00073797-protein ID=TCONS_00073797-protein|Name=TCONS_00073797-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MVFKPLLIVLFLVTNLRCENLFQDALDYEISVLSWPYNEQNKDILSEENL
LEWNPVIIAIQNITKGEYRELRQANDLLATNYEESGIDSLCMKGADDVIC
NPILYKGDRFEQVDDEEVFTGVNRTKFGQVSWTQLKMHGNLENRKKRDFP
SEIGKGFEGLFKMLGDVEDSEENKDECKNQPGAVFFLNGNLKEGEQAGKD
FEKVLTYIYSNLMCRRVKRTILVGNIGWKHSQDVIGKFRRGFFEHTSTSF
SNVNQIWSHDFNRITGTDSDIVEYDGKDAKQQIKERFIAPSFVAFHHSMI
KNIGKTSEI Run BLAST on NCBI transcript from alignment at scaffold_98:195792..197996+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073797 ID=TCONS_00073797|Name=TCONS_00073797|organism=Clytia hemisphaerica|type=transcript|length=2205bp|location=Sequence derived from alignment at scaffold_98:195792..197996+ (Clytia hemisphaerica)
atcattttgacaaaatgaaagaaatttaaagtataagaaagaaaataaga
CAAGTGTCAGCGCAAAGGTCACTTCATCAAAAATACTTTTCCAATGTTTG
ATTTCAATACCGAAATGTGAACTTGTAAATATTTCTGCTTGGATTTCAAG
TCAACTTGGTGAAAGGAATTCAAGTTCATAATTCATTTGGCAATAATTTT
CACGCAGTAAAGATGGTCTTCAAACCCTTACTGATAGTTTTGTTCCTGGT
GACAAATTTGAGATGTGAAAATCTTTTCCAAGATGCTTTGGACTACGAAA
TAAGCGTCCTGTCTTGGCCGTATAATGAACAAAACAAGGACATCCTGAGC
GAAGAAAACCTCCTTGAATGGAACCCTGTTGTAAGTATAAAACGTTTATT
AAGGGAATGTCCTTCTAATGAAGATATGTTTCAGGGAAAATGTACAGTTG
GAGAATAATCCATCGGGAACTGTTCATCGGGGAACTGTTTATCAGGGAAA
CGTTCATCGGGGAAACGTTCATCGGGGAAACGTTCATCGGGGAAACGTTC
ATCGGGGAAACGTTCATCGGGAACTGTTGAACTGTTCATCGGGGAAACGT
TCATCGGGGAACTGTCATCGGGAAATCTTTCAACTTAGCTTTCcgaataa
acaacaataaaattcGATTTAAAGAAGGCGATGGGTTATTGTTCATTTAA
ATTTTCGCCATAAAAATACGTTTTTCTTCCTCGTTAGACTTCAGTTGTTA
TCACAATAGCATGAAATGGAAGAGTCGCTTTgtgatttgtgatttttttt
tcattgaccAGATCATTGCTATCCAAAACATTACAAAAGGAGAATACAGA
GAACTGCGACAAGCAAACGATCTGTTGGCAACTAACTACGAGGAGTCTGG
GATCGACAGTCTATGTATGAAGGgtgctgatgacgtcatttgtaACCCGA
TCCTTTACAAAGGCGATCGATTTGAACAGGTGGATGATGAAGAGGTTTTC
ACTGGAGTAAATCGGACAAAATTCGGACAAGTCTCATGGACACAACTAAA
GATGCACGGCAATCTTGAAAACCGAAAAAAGAGAGATTTTCCATCTGAAA
TAGGTAAAGGGTTTGAAGGATTGTTCAAAATGTTGGGCGATGTTGAGGAC
AGTGAAGAAAACAAGGATGAGTGTAAAAATCAACCGGGCGCTGTCTTCTT
CTTGAACGGGAATCTAAAGGAAGGTGAGCAAGCTGGAAAGGACTTCGAAA
AAGTTCTTACATACATCTACTCTAACTTGATGTGTCGGCGTGTAAAGCGA
ACCATTCTTGTCGGAAATATCGGTTGGAAGCACAGCCAAGACGTCATCGG
GAAATTCCGTCGTGGATTCTTCGAACACACCTCGACAAGCTTCTCAAACG
TCAATCAaatttggtcacatgacttcAACAGAATTACGGGGACAGATTCA
GATATCGTGGAGTATGATGGGAAGGATGCTAAGCAACAAATCAAAGAGCG
ATTCATAGCACCATCGTTCGTTGCTTTCCATCACTCGATGATCAAAAATA
TAGGCAAAACGTCcgaaatttgaaacaaaacgtccgaaaaatacaaattt
ggaTTTCCCTTGAAAACATTAAAGGAAACATTATCAACAATTGGATTTTA
AGAATACATCTTATGTAATGTTTTAAAGTAATTATGAAAAAGATACCTAA
TTATATACAAAAGAGGATAAAAAATATGCGCATGGTAAAAATGATTTATG
TAAAATAAAGAAACTTACTATCCATCGGAattctcttcttcttcattttc
cagCGTTTCTGTTTTCCGGAACAACcctaaaattttctcttttaaagTTC
GTTTTTCCTTGACCTCTTCAACTTGAAAAGTCCGTGTTGTTAAATTATAA
ATAGATCCGAACCCGATTGCAATGACGGTACACGTCAGACAAATGACGTT
GTAGGGCATACTAAAATCGGGTAACGGTATCCGAAGGAGTAAAGGTTCGG
AATAAATACGTCGGAAAACCATTTCATCACTGGTCGTACCAAATCTATGA
AAAATAAGAGTTAGGTTGAACAAATGTGAATTTACTCCCTCCTAAACTTG
ATACACGCTTTTTTTATAAGAATAGTGTACTTTGGCTGAGGGTGAGCATT
ATTTTTATTTTTCTATTGTTCTAAACAATAGGCCTATTGTTCTAACTCTG
AAATC Coding sequence (CDS) from alignment at scaffold_98:195792..197996+ >TCONS_00073797 ID=TCONS_00073797|Name=TCONS_00073797|organism=Clytia hemisphaerica|type=CDS|length=1860bp|location=Sequence derived from alignment at scaffold_98:195792..197996+ (Clytia hemisphaerica)
ATGGTCTTCAAACCCTTACTGATAGTTTTGTTCCTGGTGACAAATTTGAG
ATGTGAAAATCTTTTCCAAGATGCTTTGGACTACGAAATAAGCGTCCTGT
CTTGGCCGTATAATGAACAAAACAAGGACATCCTGAGCGAAGAAAACCTC
CTTGAATGGAACCCTGTTATCATTGCTATCCAAAACATTACAAAAGGAGA
ATACAGAGAACTGCGACAAGCAAACGATCTGTTGGCAACTAACTACGAGG
AGTCTGGGATCGACAGTCTATGTATGAAGGgtgctgatgacgtcatttgt
aACCCGATCCTTTACAAAGGCGATCGATTTGAACAGGTGGATGATGAAGA
GGTTTTCACTGGAGTAAATCGGACAAAATTCGGACAAGTCTCATGGACAC
AACTAAAGATGCACGGCAATCTTGAAAACCGAAAAAAGAGAGATTTTCCA
TCTGAAATAGGTAAAGGGTTTGAAGGATTGTTCAAAATGTTGGGCGATGT
TGAGGACAGTGAAGAAAACAAGGATGAGTGTAAAAATCAACCGGGCGCTG
TCTTCTTCTTGAACGGGAATCTAAAGGAAGGTGAGCAAGCTGGAAAGGAC
TTCGAAAAAGTTCTTACATACATCTACTCTAACTTGATGTGTCGGCGTGT
AAAGCGAACCATTCTTGTCGGAAATATCGGTTGGAAGCACAGCCAAGACG
TCATCGGGAAATTCCGTCGTGGATTCTTCGAACACACCTCGACAAGCTTC
TCAAACGTCAATCAaatttggtcacatgacttcAACAGAATTACGGGGAC
AGATTCAGATATCGTGGAGTATGATGGGAAGGATGCTAAGCAACAAATCA
AAGAGCGATTCATAGCACCATCGTTCGTTGCTTTCCATCACTCGATGATC
AAAAATATAGGCAAAACGTCcgaaatttgaATGGTCTTCAAACCCTTACT
GATAGTTTTGTTCCTGGTGACAAATTTGAGATGTGAAAATCTTTTCCAAG
ATGCTTTGGACTACGAAATAAGCGTCCTGTCTTGGCCGTATAATGAACAA
AACAAGGACATCCTGAGCGAAGAAAACCTCCTTGAATGGAACCCTGTTAT
CATTGCTATCCAAAACATTACAAAAGGAGAATACAGAGAACTGCGACAAG
CAAACGATCTGTTGGCAACTAACTACGAGGAGTCTGGGATCGACAGTCTA
TGTATGAAGGgtgctgatgacgtcatttgtaACCCGATCCTTTACAAAGG
CGATCGATTTGAACAGGTGGATGATGAAGAGGTTTTCACTGGAGTAAATC
GGACAAAATTCGGACAAGTCTCATGGACACAACTAAAGATGCACGGCAAT
CTTGAAAACCGAAAAAAGAGAGATTTTCCATCTGAAATAGGTAAAGGGTT
TGAAGGATTGTTCAAAATGTTGGGCGATGTTGAGGACAGTGAAGAAAACA
AGGATGAGTGTAAAAATCAACCGGGCGCTGTCTTCTTCTTGAACGGGAAT
CTAAAGGAAGGTGAGCAAGCTGGAAAGGACTTCGAAAAAGTTCTTACATA
CATCTACTCTAACTTGATGTGTCGGCGTGTAAAGCGAACCATTCTTGTCG
GAAATATCGGTTGGAAGCACAGCCAAGACGTCATCGGGAAATTCCGTCGT
GGATTCTTCGAACACACCTCGACAAGCTTCTCAAACGTCAATCAaatttg
gtcacatgacttcAACAGAATTACGGGGACAGATTCAGATATCGTGGAGT
ATGATGGGAAGGATGCTAAGCAACAAATCAAAGAGCGATTCATAGCACCA
TCGTTCGTTGCTTTCCATCACTCGATGATCAAAAATATAGGCAAAACGTC
cgaaatttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073797-exon-scaffold_98-1491911889:195792..196171 | TCONS_00073797-exon-scaffold_98-1491911889:195792..196171 | Clytia hemisphaerica | exon |
| TCONS_00073797-exon-scaffold_98-1510915933:195792..196171 | TCONS_00073797-exon-scaffold_98-1510915933:195792..196171 | Clytia hemisphaerica | exon |
| TCONS_00073797-exon-scaffold_98-1575043694:195792..196171 | TCONS_00073797-exon-scaffold_98-1575043694:195792..196171 | Clytia hemisphaerica | exon |
| TCONS_00073797-exon-scaffold_98-1491911889:196603..197996 | TCONS_00073797-exon-scaffold_98-1491911889:196603..197996 | Clytia hemisphaerica | exon |
| TCONS_00073797-exon-scaffold_98-1510915933:196603..197996 | TCONS_00073797-exon-scaffold_98-1510915933:196603..197996 | Clytia hemisphaerica | exon |
| TCONS_00073797-exon-scaffold_98-1575043694:196603..197996 | TCONS_00073797-exon-scaffold_98-1575043694:196603..197996 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_98 | supercontig | scaffold_98:195792..197996 + |
Blast
BLAST of TCONS_00073797 vs. Swiss-Prot (Human)
Match: PIGT (GPI transamidase component PIG-T OS=Homo sapiens GN=PIGT PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.990e-18 Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = -1 Query: 1382 FGTTSDEMVFRRIYSEPLLLRIPLPDFSMPYNVICLTCTVIAIGFGSIYNLTTRTFQVEEVKEKRTLKEKILGLFRK 1612
F + F R+Y+EPLL+ +P PDFSMPYNVICLTCTV+A+ +GS YNL TRTF +EE + L +++ L R+
Sbjct: 496 FPVSDGSNYFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG-GLAKRLANLIRR 571
The following BLAST results are available for this feature:
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