TCONS_00073797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073797
Unique NameTCONS_00073797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1774

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073797 ID=TCONS_00073797|Name=TCONS_00073797|organism=Clytia hemisphaerica|type=transcript|length=1774bp
atcattttgacaaaatgaaagaaatttaaagtataagaaagaaaataaga
CAAGTGTCAGCGCAAAGGTCACTTCATCAAAAATACTTTTCCAATGTTTG
ATTTCAATACCGAAATGTGAACTTGTAAATATTTCTGCTTGGATTTCAAG
TCAACTTGGTGAAAGGAATTCAAGTTCATAATTCATTTGGCAATAATTTT
CACGCAGTAAAGATGGTCTTCAAACCCTTACTGATAGTTTTGTTCCTGGT
GACAAATTTGAGATGTGAAAATCTTTTCCAAGATGCTTTGGACTACGAAA
TAAGCGTCCTGTCTTGGCCGTATAATGAACAAAACAAGGACATCCTGAGC
GAAGAAAACCTCCTTGAATGGAACCCTGTTATCATTGCTATCCAAAACAT
TACAAAAGGAGAATACAGAGAACTGCGACAAGCAAACGATCTGTTGGCAA
CTAACTACGAGGAGTCTGGGATCGACAGTCTATGTATGAAGGgtgctgat
gacgtcatttgtaACCCGATCCTTTACAAAGGCGATCGATTTGAACAGGT
GGATGATGAAGAGGTTTTCACTGGAGTAAATCGGACAAAATTCGGACAAG
TCTCATGGACACAACTAAAGATGCACGGCAATCTTGAAAACCGAAAAAAG
AGAGATTTTCCATCTGAAATAGGTAAAGGGTTTGAAGGATTGTTCAAAAT
GTTGGGCGATGTTGAGGACAGTGAAGAAAACAAGGATGAGTGTAAAAATC
AACCGGGCGCTGTCTTCTTCTTGAACGGGAATCTAAAGGAAGGTGAGCAA
GCTGGAAAGGACTTCGAAAAAGTTCTTACATACATCTACTCTAACTTGAT
GTGTCGGCGTGTAAAGCGAACCATTCTTGTCGGAAATATCGGTTGGAAGC
ACAGCCAAGACGTCATCGGGAAATTCCGTCGTGGATTCTTCGAACACACC
TCGACAAGCTTCTCAAACGTCAATCAaatttggtcacatgacttcAACAG
AATTACGGGGACAGATTCAGATATCGTGGAGTATGATGGGAAGGATGCTA
AGCAACAAATCAAAGAGCGATTCATAGCACCATCGTTCGTTGCTTTCCAT
CACTCGATGATCAAAAATATAGGCAAAACGTCcgaaatttgaaacaaaac
gtccgaaaaatacaaatttggaTTTCCCTTGAAAACATTAAAGGAAACAT
TATCAACAATTGGATTTTAAGAATACATCTTATGTAATGTTTTAAAGTAA
TTATGAAAAAGATACCTAATTATATACAAAAGAGGATAAAAAATATGCGC
ATGGTAAAAATGATTTATGTAAAATAAAGAAACTTACTATCCATCGGAat
tctcttcttcttcattttccagCGTTTCTGTTTTCCGGAACAACcctaaa
attttctcttttaaagTTCGTTTTTCCTTGACCTCTTCAACTTGAAAAGT
CCGTGTTGTTAAATTATAAATAGATCCGAACCCGATTGCAATGACGGTAC
ACGTCAGACAAATGACGTTGTAGGGCATACTAAAATCGGGTAACGGTATC
CGAAGGAGTAAAGGTTCGGAATAAATACGTCGGAAAACCATTTCATCACT
GGTCGTACCAAATCTATGAAAAATAAGAGTTAGGTTGAACAAATGTGAAT
TTACTCCCTCCTAAACTTGATACACGCTTTTTTTATAAGAATAGTGTACT
TTGGCTGAGGGTGAGCATTATTTTTATTTTTCTATTGTTCTAAACAATAG
GCCTATTGTTCTAACTCTGAAATC
Run BLAST on NCBI

protein sequence of TCONS_00073797-protein

>TCONS_00073797-protein ID=TCONS_00073797-protein|Name=TCONS_00073797-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MVFKPLLIVLFLVTNLRCENLFQDALDYEISVLSWPYNEQNKDILSEENL
LEWNPVIIAIQNITKGEYRELRQANDLLATNYEESGIDSLCMKGADDVIC
NPILYKGDRFEQVDDEEVFTGVNRTKFGQVSWTQLKMHGNLENRKKRDFP
SEIGKGFEGLFKMLGDVEDSEENKDECKNQPGAVFFLNGNLKEGEQAGKD
FEKVLTYIYSNLMCRRVKRTILVGNIGWKHSQDVIGKFRRGFFEHTSTSF
SNVNQIWSHDFNRITGTDSDIVEYDGKDAKQQIKERFIAPSFVAFHHSMI
KNIGKTSEI
Run BLAST on NCBI

transcript from alignment at scaffold_98:195792..197996+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073797 ID=TCONS_00073797|Name=TCONS_00073797|organism=Clytia hemisphaerica|type=transcript|length=2205bp|location=Sequence derived from alignment at scaffold_98:195792..197996+ (Clytia hemisphaerica)
atcattttgacaaaatgaaagaaatttaaagtataagaaagaaaataaga CAAGTGTCAGCGCAAAGGTCACTTCATCAAAAATACTTTTCCAATGTTTG ATTTCAATACCGAAATGTGAACTTGTAAATATTTCTGCTTGGATTTCAAG TCAACTTGGTGAAAGGAATTCAAGTTCATAATTCATTTGGCAATAATTTT CACGCAGTAAAGATGGTCTTCAAACCCTTACTGATAGTTTTGTTCCTGGT GACAAATTTGAGATGTGAAAATCTTTTCCAAGATGCTTTGGACTACGAAA TAAGCGTCCTGTCTTGGCCGTATAATGAACAAAACAAGGACATCCTGAGC GAAGAAAACCTCCTTGAATGGAACCCTGTTGTAAGTATAAAACGTTTATT AAGGGAATGTCCTTCTAATGAAGATATGTTTCAGGGAAAATGTACAGTTG GAGAATAATCCATCGGGAACTGTTCATCGGGGAACTGTTTATCAGGGAAA CGTTCATCGGGGAAACGTTCATCGGGGAAACGTTCATCGGGGAAACGTTC ATCGGGGAAACGTTCATCGGGAACTGTTGAACTGTTCATCGGGGAAACGT TCATCGGGGAACTGTCATCGGGAAATCTTTCAACTTAGCTTTCcgaataa acaacaataaaattcGATTTAAAGAAGGCGATGGGTTATTGTTCATTTAA ATTTTCGCCATAAAAATACGTTTTTCTTCCTCGTTAGACTTCAGTTGTTA TCACAATAGCATGAAATGGAAGAGTCGCTTTgtgatttgtgatttttttt tcattgaccAGATCATTGCTATCCAAAACATTACAAAAGGAGAATACAGA GAACTGCGACAAGCAAACGATCTGTTGGCAACTAACTACGAGGAGTCTGG GATCGACAGTCTATGTATGAAGGgtgctgatgacgtcatttgtaACCCGA TCCTTTACAAAGGCGATCGATTTGAACAGGTGGATGATGAAGAGGTTTTC ACTGGAGTAAATCGGACAAAATTCGGACAAGTCTCATGGACACAACTAAA GATGCACGGCAATCTTGAAAACCGAAAAAAGAGAGATTTTCCATCTGAAA TAGGTAAAGGGTTTGAAGGATTGTTCAAAATGTTGGGCGATGTTGAGGAC AGTGAAGAAAACAAGGATGAGTGTAAAAATCAACCGGGCGCTGTCTTCTT CTTGAACGGGAATCTAAAGGAAGGTGAGCAAGCTGGAAAGGACTTCGAAA AAGTTCTTACATACATCTACTCTAACTTGATGTGTCGGCGTGTAAAGCGA ACCATTCTTGTCGGAAATATCGGTTGGAAGCACAGCCAAGACGTCATCGG GAAATTCCGTCGTGGATTCTTCGAACACACCTCGACAAGCTTCTCAAACG TCAATCAaatttggtcacatgacttcAACAGAATTACGGGGACAGATTCA GATATCGTGGAGTATGATGGGAAGGATGCTAAGCAACAAATCAAAGAGCG ATTCATAGCACCATCGTTCGTTGCTTTCCATCACTCGATGATCAAAAATA TAGGCAAAACGTCcgaaatttgaaacaaaacgtccgaaaaatacaaattt ggaTTTCCCTTGAAAACATTAAAGGAAACATTATCAACAATTGGATTTTA AGAATACATCTTATGTAATGTTTTAAAGTAATTATGAAAAAGATACCTAA TTATATACAAAAGAGGATAAAAAATATGCGCATGGTAAAAATGATTTATG TAAAATAAAGAAACTTACTATCCATCGGAattctcttcttcttcattttc cagCGTTTCTGTTTTCCGGAACAACcctaaaattttctcttttaaagTTC GTTTTTCCTTGACCTCTTCAACTTGAAAAGTCCGTGTTGTTAAATTATAA ATAGATCCGAACCCGATTGCAATGACGGTACACGTCAGACAAATGACGTT GTAGGGCATACTAAAATCGGGTAACGGTATCCGAAGGAGTAAAGGTTCGG AATAAATACGTCGGAAAACCATTTCATCACTGGTCGTACCAAATCTATGA AAAATAAGAGTTAGGTTGAACAAATGTGAATTTACTCCCTCCTAAACTTG ATACACGCTTTTTTTATAAGAATAGTGTACTTTGGCTGAGGGTGAGCATT ATTTTTATTTTTCTATTGTTCTAAACAATAGGCCTATTGTTCTAACTCTG AAATC

Coding sequence (CDS) from alignment at scaffold_98:195792..197996+

>TCONS_00073797 ID=TCONS_00073797|Name=TCONS_00073797|organism=Clytia hemisphaerica|type=CDS|length=1860bp|location=Sequence derived from alignment at scaffold_98:195792..197996+ (Clytia hemisphaerica)
ATGGTCTTCAAACCCTTACTGATAGTTTTGTTCCTGGTGACAAATTTGAG
ATGTGAAAATCTTTTCCAAGATGCTTTGGACTACGAAATAAGCGTCCTGT
CTTGGCCGTATAATGAACAAAACAAGGACATCCTGAGCGAAGAAAACCTC
CTTGAATGGAACCCTGTTATCATTGCTATCCAAAACATTACAAAAGGAGA
ATACAGAGAACTGCGACAAGCAAACGATCTGTTGGCAACTAACTACGAGG
AGTCTGGGATCGACAGTCTATGTATGAAGGgtgctgatgacgtcatttgt
aACCCGATCCTTTACAAAGGCGATCGATTTGAACAGGTGGATGATGAAGA
GGTTTTCACTGGAGTAAATCGGACAAAATTCGGACAAGTCTCATGGACAC
AACTAAAGATGCACGGCAATCTTGAAAACCGAAAAAAGAGAGATTTTCCA
TCTGAAATAGGTAAAGGGTTTGAAGGATTGTTCAAAATGTTGGGCGATGT
TGAGGACAGTGAAGAAAACAAGGATGAGTGTAAAAATCAACCGGGCGCTG
TCTTCTTCTTGAACGGGAATCTAAAGGAAGGTGAGCAAGCTGGAAAGGAC
TTCGAAAAAGTTCTTACATACATCTACTCTAACTTGATGTGTCGGCGTGT
AAAGCGAACCATTCTTGTCGGAAATATCGGTTGGAAGCACAGCCAAGACG
TCATCGGGAAATTCCGTCGTGGATTCTTCGAACACACCTCGACAAGCTTC
TCAAACGTCAATCAaatttggtcacatgacttcAACAGAATTACGGGGAC
AGATTCAGATATCGTGGAGTATGATGGGAAGGATGCTAAGCAACAAATCA
AAGAGCGATTCATAGCACCATCGTTCGTTGCTTTCCATCACTCGATGATC
AAAAATATAGGCAAAACGTCcgaaatttgaATGGTCTTCAAACCCTTACT
GATAGTTTTGTTCCTGGTGACAAATTTGAGATGTGAAAATCTTTTCCAAG
ATGCTTTGGACTACGAAATAAGCGTCCTGTCTTGGCCGTATAATGAACAA
AACAAGGACATCCTGAGCGAAGAAAACCTCCTTGAATGGAACCCTGTTAT
CATTGCTATCCAAAACATTACAAAAGGAGAATACAGAGAACTGCGACAAG
CAAACGATCTGTTGGCAACTAACTACGAGGAGTCTGGGATCGACAGTCTA
TGTATGAAGGgtgctgatgacgtcatttgtaACCCGATCCTTTACAAAGG
CGATCGATTTGAACAGGTGGATGATGAAGAGGTTTTCACTGGAGTAAATC
GGACAAAATTCGGACAAGTCTCATGGACACAACTAAAGATGCACGGCAAT
CTTGAAAACCGAAAAAAGAGAGATTTTCCATCTGAAATAGGTAAAGGGTT
TGAAGGATTGTTCAAAATGTTGGGCGATGTTGAGGACAGTGAAGAAAACA
AGGATGAGTGTAAAAATCAACCGGGCGCTGTCTTCTTCTTGAACGGGAAT
CTAAAGGAAGGTGAGCAAGCTGGAAAGGACTTCGAAAAAGTTCTTACATA
CATCTACTCTAACTTGATGTGTCGGCGTGTAAAGCGAACCATTCTTGTCG
GAAATATCGGTTGGAAGCACAGCCAAGACGTCATCGGGAAATTCCGTCGT
GGATTCTTCGAACACACCTCGACAAGCTTCTCAAACGTCAATCAaatttg
gtcacatgacttcAACAGAATTACGGGGACAGATTCAGATATCGTGGAGT
ATGATGGGAAGGATGCTAAGCAACAAATCAAAGAGCGATTCATAGCACCA
TCGTTCGTTGCTTTCCATCACTCGATGATCAAAAATATAGGCAAAACGTC
cgaaatttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045836XLOC_045836Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073797-proteinTCONS_00073797-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073797-exon-scaffold_98-1491911889:195792..196171TCONS_00073797-exon-scaffold_98-1491911889:195792..196171Clytia hemisphaericaexon
TCONS_00073797-exon-scaffold_98-1510915933:195792..196171TCONS_00073797-exon-scaffold_98-1510915933:195792..196171Clytia hemisphaericaexon
TCONS_00073797-exon-scaffold_98-1575043694:195792..196171TCONS_00073797-exon-scaffold_98-1575043694:195792..196171Clytia hemisphaericaexon
TCONS_00073797-exon-scaffold_98-1491911889:196603..197996TCONS_00073797-exon-scaffold_98-1491911889:196603..197996Clytia hemisphaericaexon
TCONS_00073797-exon-scaffold_98-1510915933:196603..197996TCONS_00073797-exon-scaffold_98-1510915933:196603..197996Clytia hemisphaericaexon
TCONS_00073797-exon-scaffold_98-1575043694:196603..197996TCONS_00073797-exon-scaffold_98-1575043694:196603..197996Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:195792..197996 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0373998 0.0373559 0.179698 0 0.108059 0.223883 0.954501 0.864589 0.530772 0.37413 1.32399 0.278002 11.4801 14.2096 0.0973737 0.321895 97.6809 114.901 15.8403 20.8221 248.042 231.212 94.4999 129.183 175.756 219.177 50.0297 47.0021 123.946 117.683
Blast
BLAST of TCONS_00073797 vs. Swiss-Prot (Human)
Match: PIGT (GPI transamidase component PIG-T OS=Homo sapiens GN=PIGT PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.990e-18
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = -1
Query: 1382 FGTTSDEMVFRRIYSEPLLLRIPLPDFSMPYNVICLTCTVIAIGFGSIYNLTTRTFQVEEVKEKRTLKEKILGLFRK 1612
            F  +     F R+Y+EPLL+ +P PDFSMPYNVICLTCTV+A+ +GS YNL TRTF +EE +    L +++  L R+
Sbjct:  496 FPVSDGSNYFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG-GLAKRLANLIRR 571          
The following BLAST results are available for this feature:
BLAST of TCONS_00073797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIGT4.990e-1851.95GPI transamidase component PIG-T OS=Homo sapiens G... [more]
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