TCONS_00073791 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073791
Unique NameTCONS_00073791
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073791 ID=TCONS_00073791|Name=TCONS_00073791|organism=Clytia hemisphaerica|type=transcript|length=1314bp
CTATATATTCATTTTAGATAGAAAATGGCAGCAGCTCAAGCAGGCGGTTA
CGAGTTCAAAGTGAAGGGCAAATTACCAACGACTTGCCAATGTCTCATTT
GCCAAGAATTGATCAGGGAATGCACGGAGTTGCCTTGTCATCATCCGTAC
TGCAAAAGCTGTTTGTTGAGGTGGGAGGACCAAAAAGGCGAAGAAAACGA
GAGATTGGGAAGAAATCATGTATTGAGATGTTTGCTTTGCAACCAAGAAT
ATAAAGTTCAAGATAAACATTACTCAGGAGCAATCGATAGAATCGTAACA
GAAGATTTGGAAGTCTTATGCAAGCACCATGAACAAGGGTGTCCGTGGAC
TGGTGCCATCAACGATTTTATGCAACACGCCACCACGGATTGTCCATACG
TCGAAATAACGTGCCGTTTTACGGGATGTGACGCACACGTCCTACGTATA
GCGAAACAACGACATGAACAAAATTGTCCGATGAAAGAGATAAACTGCGA
TTATTGCCATCAAGTAATTAAAGTTTCACGAGCACAGGAGCATTATGGAG
AGTGTGGCTTCCATCCAACTATTTGTGGAAATACTGGATGTCAACATGTA
TGCCCAAAGAATCAGATTGCACACCATCAATCGACAGATTGTTTGTATCA
AAAAATCTCTTGTTCTTTCAATGATGTTGGATGCAAAGTGAAGGTGCTGA
GAAAAGATTTACTTGATCACGAAGCTGCTGCAAACGTTTCACATACCAAA
TtgcttttacaaaaatatcttcaagcAAATACTGAACTcgcaaaaacaaa
acaggacCTCGTAGAAACGAAAAAAACTCTCAAAGTGACAAGTGATGAAT
TGTACGCAACGAAGGAACAATTGAACATTACGAATAATGAACTCTTAGAC
GCAAAAACCAAACTTCAAAATGTGGAAACAAAATTACGAGAATTTAACAA
TGAAATTGaggaaacaaaaagaaattatttgccACCAAAGAAAACACGAA
ATGTGGTAAAAACTTTAGCATCACAGCAACACAAGCCTATCGTTTCCTCA
CATCCCAAACCTTTGGCAAAACTCACATTCCAAAAAGACGACCAAGAAAt
caattcacttttttcttcctCACAATCAATCCCAAATTATGCAAGAAGAT
TAGAAAACCTTTCATCACAAATGGAGAAAGGAAAACTTTATTTCCAccaa
caaaacattttcttcaaactttcaccatttCGTAATAATGATAGAGATTT
TTTCGTCAGTCATGTCACAAACATCAACGAGTTTCGAGGTCATTCATACA
ACTTCTTCAACGAC
Run BLAST on NCBI

transcript from alignment at scaffold_98:135349..147762+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073791 ID=TCONS_00073791|Name=TCONS_00073791|organism=Clytia hemisphaerica|type=transcript|length=12414bp|location=Sequence derived from alignment at scaffold_98:135349..147762+ (Clytia hemisphaerica)
CTATATATTCATTTTAGATAGAAAATGGCAGCAGCTCAAGCAGGTNTATA
AACTAAATCAGTCTCTATGTATtcattttagataaaaaatggCAGCAGCG
CAAGCAGGCGGTTACGAGTTCAAAGTGAAGGGCAAATTACCAACGACTTG
CCAATGTCTCATTTGCCAAGAATTGATCAGGGAATGCACGGAGTTGCCTT
GTCATCATCCGTACTGCAAAAGCTGTTTGTTGAGGTGGGAGGACCAAAAA
GGCGAAGAAAACGAGAGATTGGGAAGGtacaaatatatcattttgcaaat
tttaccattcttttcgaaaatgaaagttaaattgttttaaattgtgaaat
aaatcttaaaaataatttgtgaCATCCGACTATGTACAATCATAGTATAG
CGCTCAATAAGCTTCTTCTAAGTCTTGTCGAAAAGTATTAAGATGAGAAA
GAGTCTAAGCAGCGAGAAATTTCTTGGAATGCGCACTTTCATATTGCTCC
CCCATCAAGTGTTGCCATTTTCGTAGGTTTCAAgcctttttagatttttt
tttcagacgaAATCTACGATACAcgctttttgcgaagcgaatgtacatga
gcgaagcagttttgctatcgtgtgtgcgtacctttaactttcCATTCTTT
CAACCATCTAAAAGGCAGGAGATGGNNNNNNNNNNNNNNNNNNNNNNNNN
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GAATATCTACTGTAAgaaaacgacgtttgatagcttgaacggtcaacttg
cTTTTCTTTATGATGGTTCATATTTATAGTACTTTAATGCGATAAACTTT
TGcaagaattaaatttcgcggttgggctaATCCccgaaattgaaatattt
tgtggggacttaatttcgcggatggcactattgtgTGACAAtattcttac
aatttttttgcctgtaCTGTCAAATCACATTGGTCGTTGAAATGCGTATT
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Ncttttctttgctttggtttttatgctttgatgagttgagttggatcatg
atttttgtacgattgtcacaaggaatggtcgatagtgaacCTTTCTTtat
attcctttctggatttgatgtttcgtttacattgttggtttggtttggaa
tgagctagaatgagagatgatacaatctcttgcttggtcttggaaaaaca
ggacactttatcaactttcacaacaaactaacttcaatttgtttgtatat
ttacataaatcgtacgaaggcaagtgactgtgaataaatctgaccatgtc
atgttatacctgaaaaattatacatacttgcaatatgaaaaaagtttgca
cccaacgaatgcaatgccgacaatgcaacaatgggaatggttgataAACT
GATTTTAGCAAttgtacaattaaaatttttcttaaacttggagattttct
tccccgcgtgcattttaaaacgtggaaaactttagttgtgaatttagaga
tcttttgcaacgtgtgtttcaaacgtggaaacttttgtcgtgaatttgga
gattttcttaccgtcaacttctccaacttgggactatctgacaaaacatg
ggacggcaatttggccaccatttcaccgaacctcaaaagtcatttgattt
gagttaatgaatggcgtattaaaaaaatggcaaaacgatggagcgtttaa
CGTCACTCAAGCGGCAAGTTACAAAcgtgttatttgttaatcccatcagg
cgataggcggttaggcagcgggcgttctctaattctccaatcggcgctat
cagtgaaagttatcgtgacatgttttNNNNNNNNNNNNNNNNNNNNNNNN
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taggcctattgtttagaacaatagaaaaataagaataatgctcaccctga
accaaagtacactattcttataaaagaaaaagcgtgtaatttggATATAA
ATTATTTTGGATTTCTTACGAGAAGGGGAGAGGGGAACGGTTAAAGCTTT
AACTCGGCATTCTCTGGATCAAATATATTCATTTTTTCTCCACTTCTCAA
TCTAGAAATCATGTATTGAGATGTTTGCTTTGCAACCAAGAATATAAAGT
TCAAGATGTGAGTTCCATACGTTTCTTTTATTGCAATTCTTCTAATTGAA
TCCGTTCCTCGTTTTTGGTAAAAATCGTAATTATTTCCACTGTAATTAAT
TATTCTCGTAGTTATGActttaacaatatttttgaaacaaaaagggcAAA
ATAATCATCGTTAAAATTAAAGGGCTTAGATATTGACCTCGTTGATCAAG
GAGGAATGGAGATGCCTGTATAGCAGTCTGAATCGTAGACATCTACAAAG
CCCTAGGATACTTaatataaggagcacgaatccgttagtttACACATAAG
CTAGGTCAGCTAGTTTTAAAGTGAGGCCTGTTAGTATATGAAAACGTAAA
GATACTTCAGATGATGATCAAAACATGAAGCTTGGCTTGGCACAGATGAT
TTTAACCGCAGTAACACCAAATAGTGTCAACTCTTCAACTGCCAGATGAA
GTCATCAAGTGGCTGGGCGacgacgatgttatcgtccgttataGCGGGAT
AATAAAGTTTGGAAAATATAGATGCGCAGAGTTATTAAATAGCCgccgtt
atggcggtatacggaaaaagaCTCTACCGGCTGTAAACTCGTTTGTAATT
TTCGTCGGCTTTGCTTTGGGCCTATTTCTTAGTTAGTGATTTGTCTATAG
CATAGTCGATCAAATTCGATGTTTCATTTCCAATGCAGTTTTTTGCAGAT
TTTAATGTGCATTTTTTCATTAAGAATTAAATTAGctactcaaaatttat
tttagacAACTATTACTAACAAATTAATCAAAGATCATATAGACTTGATG
TTTCATTTTCAATGcatttttttgtagattttaatgtgacattttttcat
tttaagagtTAAATTAGCtactaaaaatttcttttagacAACTATTAACA
TATTTTCCTTAAAGAATAAATACTGAACTAACAAATCAATCAAAGATCAT
CTAATCGACTTATTTACAGATCAGAATCCTCATTTGGACTATATTTAGGG
ccaccttcatttttttttgggggggggggggNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggg
gggggggtcatatACTCATAGAGGTAATTAAAGTTAGATGGAGTAACAAC
TTTTCAGTAATAGCCAGCgaagtcataaaactctttagaaatttctttca
aatcggcctcctttgattaccaatccttgatagcaaaaatctgtcaagat
atagattataagaactaaagtaaagttattcttgtccaacgaaacctcgt
atttttaggtaaaatgcgaatttttttcgagcaataatttctttatagtc
ttaaaagaagtttttattctatcgggaaactttcgagaggtaaacttctt
caaattttgcgaattctttgttgtttgtggaaggttttttgctataaata
tctttacatctaaaatagcagctgcctcaaaatgttgatagaatatagtt
gaaagTTGGCAttagtacacccctgtctcagtgacccggtggcttttaaa
atttcaccgcggataaaaaattttctttggaaatccagtggggatttttc
aaagacagaaaATACCAGTGGGGACCAGcggggaaataaaaattttgaag
agctaCTTAGTGGGgatcttgaaaaattaaaagttttcagtggggattcc
CCGGAGGCAAATTTATCCCGTTTTTtccccggggacaaaatttttgactt
tttttttcagcgggtgggggtgcccagcgggtctgtgacacgggtgtgtc
attagtaaatatgtaaaaattgacaaaatttgccgAGGATTCCCCGATCa
gcaaacatttcaaattcgatgttctgtgcttattcttgcaaggttttctt
atgttttataaacaaaactttcatcacacaatgaacaaattaaaaatgta
gcgtgattttattcaaattctcttcgactcaagtattcccatgagcgaaa
gcaaaattaatggctttttcccaaagcaacaaagcaacagtttgctatca
atgatacattacaatagaatagtaggagtagtatctccatctatattttt
attacctccatgataTACTGTAGCTGGTTTGTTGTTGTTCAATCGACATC
TCTCATCACATTGTCTTCATCATGCGTTTAGAAACATTACTCAGGAGCAA
TCGATAGAATCGTAACAGAAGATTTGGAAGTCTTATGCAAGCACCATGAA
CAAGGGTGTCCGTGGACTGGTGCCATCAACGATTTTATGGTATGGTTCCA
ATGTTTCGATATCATTAAAAGCTTACCTTAACACGTTGAACTTACTCTAC
TCGTACAGGGAACTTTCCTTAGAGGAGGTCATTTTTGGAGAATCAAGGAC
cctccactggattttttatatatttttagataACATACTTAGCATGCGGT
AATCTGCTGCTTTGTGAACATATAATGATTGACCGCCGAATCTTTCAACA
TGAAATATCCCTTTTCAGTATCTTCATTAGCTTCGGATATaggtattttt
atttctatttcaaCAGCAACACGCCACCACGGATTGTCCATACGTCGAAA
TAACGTGCCGTTTTACGGGATGTGACGCACACGTCCTACGTATAGCGAAA
CAACGACATGAACAAAATTGTCCGATGAAAGAGATAAACTGCGATTATTG
CCATCAAGTAATTAAAGTTTCACGAGCACAGGTGCAAGTCTTGCAAATGT
TAAATACTTGTTATCGGAGAAGTGTAGATAGATACTCTTGTCCTATTCAT
GGTGTTTCCTTTCCATTATACCGTCAAGGAAAATGAGTTTTTCAGACAAA
GATTGGAGTTTActtcagaaaatgaaaaaaataattttagctAGTTGTAA
TTTTGCTAAAAGTGGTTCTCGTCAAGATCTAAATGTGTTAAAACGAACAT
ATAACTTTACTTGCGCAACCAGAATTTCATAAAAGGGACcgtggaaaact
ttttgaatattgaatctAGGCCAGTGCGCTTATCACGTTCGACAGTTCTC
AATcgctttttaacttttttattaaTCATTTTCTTAGGAGCATTATGGAG
AGTGTGGCTTCCATCCAACTATTTGTGGAAATACTGGATGTCAACATGTA
TGCCCAAAGAATCAGGTACTTCTCTATTTTAACCTCATTAACCGTAAGCT
TTATGTTTTTAGCCCCAGGTGAGTAGAATCTatcaccctcgattattttt
gatctagaaaagctACGACAATGAAAATTGGTACATTTATGTGCTCATAA
AACAAACTTCCATTCcaggaagaaaaagatttttttcaggttttcataGT
GTTTGGTTAAAAAAGGATTGAAATAAGTCTTTCTAAGCTATCTCAGATAT
ATTCATCAATAAATCACTAATCCTCTACGTggataaattattttcataag
TTTTAACGGTACACTTCATCTTCTGATCTTTAGATTGCACACCATCAATC
GACAGATTGTTTGTATCAAAAAATCTCTTGTTCTTTCAATGATGTTGGAT
GCAAAGTGAAGGTGAGTGATCTGCTTCGGGAATtcgaccattgagtttaa
agtcctgaaggggctagagtagaaaatctttgattgggaatgaaaccact
tatttcccatctgaAACGCGTTGCGCACGTGAATTTCACACAAACGCCAT
ATTGAAAGTGAAATCCACCAACGCCAGAAATGCCATGTGAAAACAAAGTa
agcgctagattcaatccatcatTCTAAAAGGGTTGCAAGCTTCGCTTTTT
CTTGCATTAAGAAGGTTGAGAATTCCTTTCGGGTTTCAAACTCAATGGTG
CGAAAGGTAAAGGTTGGTCTCTTTAAGGGTTACAAAAAATCATGATTTCC
CAtgtaaagtcaaaaaaatctaaaaggtTTGGACATTTTTCGGAAATTGT
CACACCGTTTTACCTCGGGTCGGTTTACGGAGGCTCATTCCGCACATACC
CGACATTATCTAAACCTAATACCCCCCCCCTGGGAGGAGGTCCCTTTCTT
GAATGTAATATTACGTTTTCCTCTTTACATCTGTCTTCACCATGCCTGAC
TTAATACTTATTAGATCTCTCGATTCTCGAAATATAGTCAATTCATTTTA
TGATCTGAGATAACACGCCATAGATATTTTCAGTCTGCCCCTTTAAATCT
ATAGATGCGACGCTCCTAACAGTAATTTGATCTTACTTTCCTATCGCTAG
TAATGAGCTGAGTTGGTAGTCTATAATAGATGTCACGGTTTTTTATGCAG
TAGTGTCTATTTCTTGTGACTTTTTCGGATGTTTGGAGCCCAGGTTCTCG
AGCTCTAAGCATCCTGAGAACTGGTTTATTGATATCTATTTAGGTGCTGA
GAAAAGATTTACTTGATCACGAAGCTGCTGCAAACGTTTCACATACCAAA
TtgcttttacaaaaatatcttcaagcAAATACTGAACTcgcaaaaacaaa
acaggacCTCGTAGAAACGAAAAAAACTCTCAAAGTGACAAGTGATGAAT
TGTACGCAACGAAGGAACAATTGAACATTACGAATAATGAACTCTTAGAC
GCAAAAACCAAACTTCAAAATGTGGAAACAAAATTACGAGAATTTAACAA
TGAAATTGaggaaacaaaaagaaattatttgccACCAAAGAAAACACGAA
ATGTGGTAAAAACTTTAGCATCACAGCAACACAAGCCTATCGTTTCCTCA
CATCCCAAACCTTTGGCAAAACTCACATTCCAAAAAGACGACCAAGAAAt
caattcacttttttcttcctCACAATCAATCCCAAATTATGCAAGAAGAT
TAGAAAACCTTTCATCACAAATGGAGAAAGGAAAACTTTATTTCCAccaa
caaaacattttcttcaaactttcaccatttCGTAATAATGATAGAGATTT
TTTCGTCAGTCATGTCACAAACATCAACGAGTTTCGAGGTCATTCATACA
ACTTCTTCAACGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045834XLOC_045834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073791-exon-scaffold_98-1491911889:135349..135391TCONS_00073791-exon-scaffold_98-1491911889:135349..135391Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:135349..135391TCONS_00073791-exon-scaffold_98-1510915933:135349..135391Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:135349..135391TCONS_00073791-exon-scaffold_98-1575043694:135349..135391Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1491911889:135456..135624TCONS_00073791-exon-scaffold_98-1491911889:135456..135624Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:135456..135624TCONS_00073791-exon-scaffold_98-1510915933:135456..135624Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:135456..135624TCONS_00073791-exon-scaffold_98-1575043694:135456..135624Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1491911889:142654..142705TCONS_00073791-exon-scaffold_98-1491911889:142654..142705Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:142654..142705TCONS_00073791-exon-scaffold_98-1510915933:142654..142705Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:142654..142705TCONS_00073791-exon-scaffold_98-1575043694:142654..142705Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1491911889:144930..145037TCONS_00073791-exon-scaffold_98-1491911889:144930..145037Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:144930..145037TCONS_00073791-exon-scaffold_98-1510915933:144930..145037Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:144930..145037TCONS_00073791-exon-scaffold_98-1575043694:144930..145037Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1491911889:145315..145479TCONS_00073791-exon-scaffold_98-1491911889:145315..145479Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:145315..145479TCONS_00073791-exon-scaffold_98-1510915933:145315..145479Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:145315..145479TCONS_00073791-exon-scaffold_98-1575043694:145315..145479Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1491911889:145836..145913TCONS_00073791-exon-scaffold_98-1491911889:145836..145913Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:145836..145913TCONS_00073791-exon-scaffold_98-1510915933:145836..145913Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:145836..145913TCONS_00073791-exon-scaffold_98-1575043694:145836..145913Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1491911889:146232..146309TCONS_00073791-exon-scaffold_98-1491911889:146232..146309Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:146232..146309TCONS_00073791-exon-scaffold_98-1510915933:146232..146309Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:146232..146309TCONS_00073791-exon-scaffold_98-1575043694:146232..146309Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1491911889:147142..147762TCONS_00073791-exon-scaffold_98-1491911889:147142..147762Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:147142..147762TCONS_00073791-exon-scaffold_98-1510915933:147142..147762Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:147142..147762TCONS_00073791-exon-scaffold_98-1575043694:147142..147762Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:135349..147762 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (22.074 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.186572	0.192017	0	0	1.65617	1.74762	1.11657	2.51867	1.62895	4.61777	4.10626	3.09052	21.4251	22.074	9.91675	12.7143	1.28899	4.06987	8.92211	6.94783	2.29943	2.0084	3.24084	1.58127	15.2266	15.3042	4.56665	6.06789	11.0062	9.16729
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
1002003004005006007008009001000110012001300Expect = 6.25e-16 / Id = 22.58SequenceTRAF3
Match NameE-valueIdentityDescription
TRAF36.250e-1622.58TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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