TCONS_00073791 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073791
Unique NameTCONS_00073791
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073791 ID=TCONS_00073791|Name=TCONS_00073791|organism=Clytia hemisphaerica|type=transcript|length=1314bp
CTATATATTCATTTTAGATAGAAAATGGCAGCAGCTCAAGCAGGCGGTTA
CGAGTTCAAAGTGAAGGGCAAATTACCAACGACTTGCCAATGTCTCATTT
GCCAAGAATTGATCAGGGAATGCACGGAGTTGCCTTGTCATCATCCGTAC
TGCAAAAGCTGTTTGTTGAGGTGGGAGGACCAAAAAGGCGAAGAAAACGA
GAGATTGGGAAGAAATCATGTATTGAGATGTTTGCTTTGCAACCAAGAAT
ATAAAGTTCAAGATAAACATTACTCAGGAGCAATCGATAGAATCGTAACA
GAAGATTTGGAAGTCTTATGCAAGCACCATGAACAAGGGTGTCCGTGGAC
TGGTGCCATCAACGATTTTATGCAACACGCCACCACGGATTGTCCATACG
TCGAAATAACGTGCCGTTTTACGGGATGTGACGCACACGTCCTACGTATA
GCGAAACAACGACATGAACAAAATTGTCCGATGAAAGAGATAAACTGCGA
TTATTGCCATCAAGTAATTAAAGTTTCACGAGCACAGGAGCATTATGGAG
AGTGTGGCTTCCATCCAACTATTTGTGGAAATACTGGATGTCAACATGTA
TGCCCAAAGAATCAGATTGCACACCATCAATCGACAGATTGTTTGTATCA
AAAAATCTCTTGTTCTTTCAATGATGTTGGATGCAAAGTGAAGGTGCTGA
GAAAAGATTTACTTGATCACGAAGCTGCTGCAAACGTTTCACATACCAAA
TtgcttttacaaaaatatcttcaagcAAATACTGAACTcgcaaaaacaaa
acaggacCTCGTAGAAACGAAAAAAACTCTCAAAGTGACAAGTGATGAAT
TGTACGCAACGAAGGAACAATTGAACATTACGAATAATGAACTCTTAGAC
GCAAAAACCAAACTTCAAAATGTGGAAACAAAATTACGAGAATTTAACAA
TGAAATTGaggaaacaaaaagaaattatttgccACCAAAGAAAACACGAA
ATGTGGTAAAAACTTTAGCATCACAGCAACACAAGCCTATCGTTTCCTCA
CATCCCAAACCTTTGGCAAAACTCACATTCCAAAAAGACGACCAAGAAAt
caattcacttttttcttcctCACAATCAATCCCAAATTATGCAAGAAGAT
TAGAAAACCTTTCATCACAAATGGAGAAAGGAAAACTTTATTTCCAccaa
caaaacattttcttcaaactttcaccatttCGTAATAATGATAGAGATTT
TTTCGTCAGTCATGTCACAAACATCAACGAGTTTCGAGGTCATTCATACA
ACTTCTTCAACGAC
Run BLAST on NCBI

transcript from alignment at scaffold_98:135349..147762+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073791 ID=TCONS_00073791|Name=TCONS_00073791|organism=Clytia hemisphaerica|type=transcript|length=12414bp|location=Sequence derived from alignment at scaffold_98:135349..147762+ (Clytia hemisphaerica)
CTATATATTCATTTTAGATAGAAAATGGCAGCAGCTCAAGCAGGTNTATA AACTAAATCAGTCTCTATGTATtcattttagataaaaaatggCAGCAGCG CAAGCAGGCGGTTACGAGTTCAAAGTGAAGGGCAAATTACCAACGACTTG CCAATGTCTCATTTGCCAAGAATTGATCAGGGAATGCACGGAGTTGCCTT GTCATCATCCGTACTGCAAAAGCTGTTTGTTGAGGTGGGAGGACCAAAAA GGCGAAGAAAACGAGAGATTGGGAAGGtacaaatatatcattttgcaaat tttaccattcttttcgaaaatgaaagttaaattgttttaaattgtgaaat aaatcttaaaaataatttgtgaCATCCGACTATGTACAATCATAGTATAG CGCTCAATAAGCTTCTTCTAAGTCTTGTCGAAAAGTATTAAGATGAGAAA GAGTCTAAGCAGCGAGAAATTTCTTGGAATGCGCACTTTCATATTGCTCC CCCATCAAGTGTTGCCATTTTCGTAGGTTTCAAgcctttttagatttttt tttcagacgaAATCTACGATACAcgctttttgcgaagcgaatgtacatga gcgaagcagttttgctatcgtgtgtgcgtacctttaactttcCATTCTTT CAACCATCTAAAAGGCAGGAGATGGNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGA GAATATCTACTGTAAgaaaacgacgtttgatagcttgaacggtcaacttg cTTTTCTTTATGATGGTTCATATTTATAGTACTTTAATGCGATAAACTTT TGcaagaattaaatttcgcggttgggctaATCCccgaaattgaaatattt tgtggggacttaatttcgcggatggcactattgtgTGACAAtattcttac aatttttttgcctgtaCTGTCAAATCACATTGGTCGTTGAAATGCGTATT NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Ncttttctttgctttggtttttatgctttgatgagttgagttggatcatg atttttgtacgattgtcacaaggaatggtcgatagtgaacCTTTCTTtat attcctttctggatttgatgtttcgtttacattgttggtttggtttggaa tgagctagaatgagagatgatacaatctcttgcttggtcttggaaaaaca ggacactttatcaactttcacaacaaactaacttcaatttgtttgtatat ttacataaatcgtacgaaggcaagtgactgtgaataaatctgaccatgtc atgttatacctgaaaaattatacatacttgcaatatgaaaaaagtttgca cccaacgaatgcaatgccgacaatgcaacaatgggaatggttgataAACT GATTTTAGCAAttgtacaattaaaatttttcttaaacttggagattttct tccccgcgtgcattttaaaacgtggaaaactttagttgtgaatttagaga tcttttgcaacgtgtgtttcaaacgtggaaacttttgtcgtgaatttgga gattttcttaccgtcaacttctccaacttgggactatctgacaaaacatg ggacggcaatttggccaccatttcaccgaacctcaaaagtcatttgattt gagttaatgaatggcgtattaaaaaaatggcaaaacgatggagcgtttaa CGTCACTCAAGCGGCAAGTTACAAAcgtgttatttgttaatcccatcagg cgataggcggttaggcagcgggcgttctctaattctccaatcggcgctat cagtgaaagttatcgtgacatgttttNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaacaa taggcctattgtttagaacaatagaaaaataagaataatgctcaccctga accaaagtacactattcttataaaagaaaaagcgtgtaatttggATATAA ATTATTTTGGATTTCTTACGAGAAGGGGAGAGGGGAACGGTTAAAGCTTT AACTCGGCATTCTCTGGATCAAATATATTCATTTTTTCTCCACTTCTCAA TCTAGAAATCATGTATTGAGATGTTTGCTTTGCAACCAAGAATATAAAGT TCAAGATGTGAGTTCCATACGTTTCTTTTATTGCAATTCTTCTAATTGAA TCCGTTCCTCGTTTTTGGTAAAAATCGTAATTATTTCCACTGTAATTAAT TATTCTCGTAGTTATGActttaacaatatttttgaaacaaaaagggcAAA ATAATCATCGTTAAAATTAAAGGGCTTAGATATTGACCTCGTTGATCAAG GAGGAATGGAGATGCCTGTATAGCAGTCTGAATCGTAGACATCTACAAAG CCCTAGGATACTTaatataaggagcacgaatccgttagtttACACATAAG CTAGGTCAGCTAGTTTTAAAGTGAGGCCTGTTAGTATATGAAAACGTAAA GATACTTCAGATGATGATCAAAACATGAAGCTTGGCTTGGCACAGATGAT TTTAACCGCAGTAACACCAAATAGTGTCAACTCTTCAACTGCCAGATGAA GTCATCAAGTGGCTGGGCGacgacgatgttatcgtccgttataGCGGGAT AATAAAGTTTGGAAAATATAGATGCGCAGAGTTATTAAATAGCCgccgtt atggcggtatacggaaaaagaCTCTACCGGCTGTAAACTCGTTTGTAATT TTCGTCGGCTTTGCTTTGGGCCTATTTCTTAGTTAGTGATTTGTCTATAG CATAGTCGATCAAATTCGATGTTTCATTTCCAATGCAGTTTTTTGCAGAT TTTAATGTGCATTTTTTCATTAAGAATTAAATTAGctactcaaaatttat tttagacAACTATTACTAACAAATTAATCAAAGATCATATAGACTTGATG TTTCATTTTCAATGcatttttttgtagattttaatgtgacattttttcat tttaagagtTAAATTAGCtactaaaaatttcttttagacAACTATTAACA TATTTTCCTTAAAGAATAAATACTGAACTAACAAATCAATCAAAGATCAT CTAATCGACTTATTTACAGATCAGAATCCTCATTTGGACTATATTTAGGG ccaccttcatttttttttgggggggggggggNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggg gggggggtcatatACTCATAGAGGTAATTAAAGTTAGATGGAGTAACAAC TTTTCAGTAATAGCCAGCgaagtcataaaactctttagaaatttctttca aatcggcctcctttgattaccaatccttgatagcaaaaatctgtcaagat atagattataagaactaaagtaaagttattcttgtccaacgaaacctcgt atttttaggtaaaatgcgaatttttttcgagcaataatttctttatagtc ttaaaagaagtttttattctatcgggaaactttcgagaggtaaacttctt caaattttgcgaattctttgttgtttgtggaaggttttttgctataaata tctttacatctaaaatagcagctgcctcaaaatgttgatagaatatagtt gaaagTTGGCAttagtacacccctgtctcagtgacccggtggcttttaaa atttcaccgcggataaaaaattttctttggaaatccagtggggatttttc aaagacagaaaATACCAGTGGGGACCAGcggggaaataaaaattttgaag agctaCTTAGTGGGgatcttgaaaaattaaaagttttcagtggggattcc CCGGAGGCAAATTTATCCCGTTTTTtccccggggacaaaatttttgactt tttttttcagcgggtgggggtgcccagcgggtctgtgacacgggtgtgtc attagtaaatatgtaaaaattgacaaaatttgccgAGGATTCCCCGATCa gcaaacatttcaaattcgatgttctgtgcttattcttgcaaggttttctt atgttttataaacaaaactttcatcacacaatgaacaaattaaaaatgta gcgtgattttattcaaattctcttcgactcaagtattcccatgagcgaaa gcaaaattaatggctttttcccaaagcaacaaagcaacagtttgctatca atgatacattacaatagaatagtaggagtagtatctccatctatattttt attacctccatgataTACTGTAGCTGGTTTGTTGTTGTTCAATCGACATC TCTCATCACATTGTCTTCATCATGCGTTTAGAAACATTACTCAGGAGCAA TCGATAGAATCGTAACAGAAGATTTGGAAGTCTTATGCAAGCACCATGAA CAAGGGTGTCCGTGGACTGGTGCCATCAACGATTTTATGGTATGGTTCCA ATGTTTCGATATCATTAAAAGCTTACCTTAACACGTTGAACTTACTCTAC TCGTACAGGGAACTTTCCTTAGAGGAGGTCATTTTTGGAGAATCAAGGAC cctccactggattttttatatatttttagataACATACTTAGCATGCGGT AATCTGCTGCTTTGTGAACATATAATGATTGACCGCCGAATCTTTCAACA TGAAATATCCCTTTTCAGTATCTTCATTAGCTTCGGATATaggtattttt atttctatttcaaCAGCAACACGCCACCACGGATTGTCCATACGTCGAAA TAACGTGCCGTTTTACGGGATGTGACGCACACGTCCTACGTATAGCGAAA CAACGACATGAACAAAATTGTCCGATGAAAGAGATAAACTGCGATTATTG CCATCAAGTAATTAAAGTTTCACGAGCACAGGTGCAAGTCTTGCAAATGT TAAATACTTGTTATCGGAGAAGTGTAGATAGATACTCTTGTCCTATTCAT GGTGTTTCCTTTCCATTATACCGTCAAGGAAAATGAGTTTTTCAGACAAA GATTGGAGTTTActtcagaaaatgaaaaaaataattttagctAGTTGTAA TTTTGCTAAAAGTGGTTCTCGTCAAGATCTAAATGTGTTAAAACGAACAT ATAACTTTACTTGCGCAACCAGAATTTCATAAAAGGGACcgtggaaaact ttttgaatattgaatctAGGCCAGTGCGCTTATCACGTTCGACAGTTCTC AATcgctttttaacttttttattaaTCATTTTCTTAGGAGCATTATGGAG AGTGTGGCTTCCATCCAACTATTTGTGGAAATACTGGATGTCAACATGTA TGCCCAAAGAATCAGGTACTTCTCTATTTTAACCTCATTAACCGTAAGCT TTATGTTTTTAGCCCCAGGTGAGTAGAATCTatcaccctcgattattttt gatctagaaaagctACGACAATGAAAATTGGTACATTTATGTGCTCATAA AACAAACTTCCATTCcaggaagaaaaagatttttttcaggttttcataGT GTTTGGTTAAAAAAGGATTGAAATAAGTCTTTCTAAGCTATCTCAGATAT ATTCATCAATAAATCACTAATCCTCTACGTggataaattattttcataag TTTTAACGGTACACTTCATCTTCTGATCTTTAGATTGCACACCATCAATC GACAGATTGTTTGTATCAAAAAATCTCTTGTTCTTTCAATGATGTTGGAT GCAAAGTGAAGGTGAGTGATCTGCTTCGGGAATtcgaccattgagtttaa agtcctgaaggggctagagtagaaaatctttgattgggaatgaaaccact tatttcccatctgaAACGCGTTGCGCACGTGAATTTCACACAAACGCCAT ATTGAAAGTGAAATCCACCAACGCCAGAAATGCCATGTGAAAACAAAGTa agcgctagattcaatccatcatTCTAAAAGGGTTGCAAGCTTCGCTTTTT CTTGCATTAAGAAGGTTGAGAATTCCTTTCGGGTTTCAAACTCAATGGTG CGAAAGGTAAAGGTTGGTCTCTTTAAGGGTTACAAAAAATCATGATTTCC CAtgtaaagtcaaaaaaatctaaaaggtTTGGACATTTTTCGGAAATTGT CACACCGTTTTACCTCGGGTCGGTTTACGGAGGCTCATTCCGCACATACC CGACATTATCTAAACCTAATACCCCCCCCCTGGGAGGAGGTCCCTTTCTT GAATGTAATATTACGTTTTCCTCTTTACATCTGTCTTCACCATGCCTGAC TTAATACTTATTAGATCTCTCGATTCTCGAAATATAGTCAATTCATTTTA TGATCTGAGATAACACGCCATAGATATTTTCAGTCTGCCCCTTTAAATCT ATAGATGCGACGCTCCTAACAGTAATTTGATCTTACTTTCCTATCGCTAG TAATGAGCTGAGTTGGTAGTCTATAATAGATGTCACGGTTTTTTATGCAG TAGTGTCTATTTCTTGTGACTTTTTCGGATGTTTGGAGCCCAGGTTCTCG AGCTCTAAGCATCCTGAGAACTGGTTTATTGATATCTATTTAGGTGCTGA GAAAAGATTTACTTGATCACGAAGCTGCTGCAAACGTTTCACATACCAAA TtgcttttacaaaaatatcttcaagcAAATACTGAACTcgcaaaaacaaa acaggacCTCGTAGAAACGAAAAAAACTCTCAAAGTGACAAGTGATGAAT TGTACGCAACGAAGGAACAATTGAACATTACGAATAATGAACTCTTAGAC GCAAAAACCAAACTTCAAAATGTGGAAACAAAATTACGAGAATTTAACAA TGAAATTGaggaaacaaaaagaaattatttgccACCAAAGAAAACACGAA ATGTGGTAAAAACTTTAGCATCACAGCAACACAAGCCTATCGTTTCCTCA CATCCCAAACCTTTGGCAAAACTCACATTCCAAAAAGACGACCAAGAAAt caattcacttttttcttcctCACAATCAATCCCAAATTATGCAAGAAGAT TAGAAAACCTTTCATCACAAATGGAGAAAGGAAAACTTTATTTCCAccaa caaaacattttcttcaaactttcaccatttCGTAATAATGATAGAGATTT TTTCGTCAGTCATGTCACAAACATCAACGAGTTTCGAGGTCATTCATACA ACTTCTTCAACGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045834XLOC_045834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073791-exon-scaffold_98-1491911889:135349..135391TCONS_00073791-exon-scaffold_98-1491911889:135349..135391Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:135349..135391TCONS_00073791-exon-scaffold_98-1510915933:135349..135391Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:135349..135391TCONS_00073791-exon-scaffold_98-1575043694:135349..135391Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1491911889:135456..135624TCONS_00073791-exon-scaffold_98-1491911889:135456..135624Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:135456..135624TCONS_00073791-exon-scaffold_98-1510915933:135456..135624Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:135456..135624TCONS_00073791-exon-scaffold_98-1575043694:135456..135624Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1491911889:142654..142705TCONS_00073791-exon-scaffold_98-1491911889:142654..142705Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:142654..142705TCONS_00073791-exon-scaffold_98-1510915933:142654..142705Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:142654..142705TCONS_00073791-exon-scaffold_98-1575043694:142654..142705Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1491911889:144930..145037TCONS_00073791-exon-scaffold_98-1491911889:144930..145037Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:144930..145037TCONS_00073791-exon-scaffold_98-1510915933:144930..145037Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:144930..145037TCONS_00073791-exon-scaffold_98-1575043694:144930..145037Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1491911889:145315..145479TCONS_00073791-exon-scaffold_98-1491911889:145315..145479Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:145315..145479TCONS_00073791-exon-scaffold_98-1510915933:145315..145479Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:145315..145479TCONS_00073791-exon-scaffold_98-1575043694:145315..145479Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1491911889:145836..145913TCONS_00073791-exon-scaffold_98-1491911889:145836..145913Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:145836..145913TCONS_00073791-exon-scaffold_98-1510915933:145836..145913Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:145836..145913TCONS_00073791-exon-scaffold_98-1575043694:145836..145913Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1491911889:146232..146309TCONS_00073791-exon-scaffold_98-1491911889:146232..146309Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:146232..146309TCONS_00073791-exon-scaffold_98-1510915933:146232..146309Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:146232..146309TCONS_00073791-exon-scaffold_98-1575043694:146232..146309Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1491911889:147142..147762TCONS_00073791-exon-scaffold_98-1491911889:147142..147762Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1510915933:147142..147762TCONS_00073791-exon-scaffold_98-1510915933:147142..147762Clytia hemisphaericaexon
TCONS_00073791-exon-scaffold_98-1575043694:147142..147762TCONS_00073791-exon-scaffold_98-1575043694:147142..147762Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:135349..147762 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.186572 0.192017 0 0 1.65617 1.74762 1.11657 2.51867 1.62895 4.61777 4.10626 3.09052 21.4251 22.074 9.91675 12.7143 1.28899 4.06987 8.92211 6.94783 2.29943 2.0084 3.24084 1.58127 15.2266 15.3042 4.56665 6.06789 11.0062 9.16729
Blast
BLAST of TCONS_00073791 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 6.250e-16
Identity = 77/341 (22.58%), Postives = 150/341 (43.99%), Query Frame = 1
Query:   37 QAGGYEFKVKGKLPTTCQCLICQELIRECTELPCHHPYCKSCLLRWEDQKGEENERLGRNHVLRCLLCNQEYKVQDKHYSGAIDRIVTEDLEVLCKHHEQGCPWTGAINDFMQHATTDCPYVEITCRFTGCDAHVLRIAKQRH-EQNCPMKEINCDYCHQVIKVSRAQEHYG-ECGFHPTICGNTGCQHVCP-----KNQIAHHQSTDCLYQKISCSFNDVGCKVKVLRKDLLDHEAAANVSHTKLLLQKYLQANTELAKTKQDLVETKKTL-----KVTSDELYATKEQLNITNNE--LLDAKTKLQNVETKLREFNNEIEETKRNYLPPKKTRNVVKTL 1017
            + GGY+ K    +    +C  C  ++    +  C H +C+SC+             L  +   +C  C QE  V+DK +     +     L++ C++  +GC     +   + H   DC + E+ C    C   VLR   + H E+ C  +E  C +C   + +   Q+H   +C      C    C H C      +++++ H S +C+    +CSF   GC  +   + +  HEA++ V H  LL +       +++  + + VE  K++     ++ S E+   +++  + NNE  +L  +  + +   KL+E + EI   ++N+      ++ V++L
Sbjct:   35 EQGGYKEKFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCM-----------AALLSSSSPKCTAC-QESIVKDKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHEDTDCP-----CVVVSCPHKCSVQTLLRSELSAHLS-ECVNAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWEEADSMKSSVESL 357          
The following BLAST results are available for this feature:
BLAST of TCONS_00073791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF36.250e-1622.58TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
back to top