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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073791 ID=TCONS_00073791|Name=TCONS_00073791|organism=Clytia hemisphaerica|type=transcript|length=1314bp CTATATATTCATTTTAGATAGAAAATGGCAGCAGCTCAAGCAGGCGGTTA CGAGTTCAAAGTGAAGGGCAAATTACCAACGACTTGCCAATGTCTCATTT GCCAAGAATTGATCAGGGAATGCACGGAGTTGCCTTGTCATCATCCGTAC TGCAAAAGCTGTTTGTTGAGGTGGGAGGACCAAAAAGGCGAAGAAAACGA GAGATTGGGAAGAAATCATGTATTGAGATGTTTGCTTTGCAACCAAGAAT ATAAAGTTCAAGATAAACATTACTCAGGAGCAATCGATAGAATCGTAACA GAAGATTTGGAAGTCTTATGCAAGCACCATGAACAAGGGTGTCCGTGGAC TGGTGCCATCAACGATTTTATGCAACACGCCACCACGGATTGTCCATACG TCGAAATAACGTGCCGTTTTACGGGATGTGACGCACACGTCCTACGTATA GCGAAACAACGACATGAACAAAATTGTCCGATGAAAGAGATAAACTGCGA TTATTGCCATCAAGTAATTAAAGTTTCACGAGCACAGGAGCATTATGGAG AGTGTGGCTTCCATCCAACTATTTGTGGAAATACTGGATGTCAACATGTA TGCCCAAAGAATCAGATTGCACACCATCAATCGACAGATTGTTTGTATCA AAAAATCTCTTGTTCTTTCAATGATGTTGGATGCAAAGTGAAGGTGCTGA GAAAAGATTTACTTGATCACGAAGCTGCTGCAAACGTTTCACATACCAAA TtgcttttacaaaaatatcttcaagcAAATACTGAACTcgcaaaaacaaa acaggacCTCGTAGAAACGAAAAAAACTCTCAAAGTGACAAGTGATGAAT TGTACGCAACGAAGGAACAATTGAACATTACGAATAATGAACTCTTAGAC GCAAAAACCAAACTTCAAAATGTGGAAACAAAATTACGAGAATTTAACAA TGAAATTGaggaaacaaaaagaaattatttgccACCAAAGAAAACACGAA ATGTGGTAAAAACTTTAGCATCACAGCAACACAAGCCTATCGTTTCCTCA CATCCCAAACCTTTGGCAAAACTCACATTCCAAAAAGACGACCAAGAAAt caattcacttttttcttcctCACAATCAATCCCAAATTATGCAAGAAGAT TAGAAAACCTTTCATCACAAATGGAGAAAGGAAAACTTTATTTCCAccaa caaaacattttcttcaaactttcaccatttCGTAATAATGATAGAGATTT TTTCGTCAGTCATGTCACAAACATCAACGAGTTTCGAGGTCATTCATACA ACTTCTTCAACGAC Run BLAST on NCBI transcript from alignment at scaffold_98:135349..147762+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073791 ID=TCONS_00073791|Name=TCONS_00073791|organism=Clytia hemisphaerica|type=transcript|length=12414bp|location=Sequence derived from alignment at scaffold_98:135349..147762+ (Clytia hemisphaerica) CTATATATTCATTTTAGATAGAAAATGGCAGCAGCTCAAGCAGGTNTATA
AACTAAATCAGTCTCTATGTATtcattttagataaaaaatggCAGCAGCG
CAAGCAGGCGGTTACGAGTTCAAAGTGAAGGGCAAATTACCAACGACTTG
CCAATGTCTCATTTGCCAAGAATTGATCAGGGAATGCACGGAGTTGCCTT
GTCATCATCCGTACTGCAAAAGCTGTTTGTTGAGGTGGGAGGACCAAAAA
GGCGAAGAAAACGAGAGATTGGGAAGGtacaaatatatcattttgcaaat
tttaccattcttttcgaaaatgaaagttaaattgttttaaattgtgaaat
aaatcttaaaaataatttgtgaCATCCGACTATGTACAATCATAGTATAG
CGCTCAATAAGCTTCTTCTAAGTCTTGTCGAAAAGTATTAAGATGAGAAA
GAGTCTAAGCAGCGAGAAATTTCTTGGAATGCGCACTTTCATATTGCTCC
CCCATCAAGTGTTGCCATTTTCGTAGGTTTCAAgcctttttagatttttt
tttcagacgaAATCTACGATACAcgctttttgcgaagcgaatgtacatga
gcgaagcagttttgctatcgtgtgtgcgtacctttaactttcCATTCTTT
CAACCATCTAAAAGGCAGGAGATGGNNNNNNNNNNNNNNNNNNNNNNNNN
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GAATATCTACTGTAAgaaaacgacgtttgatagcttgaacggtcaacttg
cTTTTCTTTATGATGGTTCATATTTATAGTACTTTAATGCGATAAACTTT
TGcaagaattaaatttcgcggttgggctaATCCccgaaattgaaatattt
tgtggggacttaatttcgcggatggcactattgtgTGACAAtattcttac
aatttttttgcctgtaCTGTCAAATCACATTGGTCGTTGAAATGCGTATT
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Ncttttctttgctttggtttttatgctttgatgagttgagttggatcatg
atttttgtacgattgtcacaaggaatggtcgatagtgaacCTTTCTTtat
attcctttctggatttgatgtttcgtttacattgttggtttggtttggaa
tgagctagaatgagagatgatacaatctcttgcttggtcttggaaaaaca
ggacactttatcaactttcacaacaaactaacttcaatttgtttgtatat
ttacataaatcgtacgaaggcaagtgactgtgaataaatctgaccatgtc
atgttatacctgaaaaattatacatacttgcaatatgaaaaaagtttgca
cccaacgaatgcaatgccgacaatgcaacaatgggaatggttgataAACT
GATTTTAGCAAttgtacaattaaaatttttcttaaacttggagattttct
tccccgcgtgcattttaaaacgtggaaaactttagttgtgaatttagaga
tcttttgcaacgtgtgtttcaaacgtggaaacttttgtcgtgaatttgga
gattttcttaccgtcaacttctccaacttgggactatctgacaaaacatg
ggacggcaatttggccaccatttcaccgaacctcaaaagtcatttgattt
gagttaatgaatggcgtattaaaaaaatggcaaaacgatggagcgtttaa
CGTCACTCAAGCGGCAAGTTACAAAcgtgttatttgttaatcccatcagg
cgataggcggttaggcagcgggcgttctctaattctccaatcggcgctat
cagtgaaagttatcgtgacatgttttNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaacaa
taggcctattgtttagaacaatagaaaaataagaataatgctcaccctga
accaaagtacactattcttataaaagaaaaagcgtgtaatttggATATAA
ATTATTTTGGATTTCTTACGAGAAGGGGAGAGGGGAACGGTTAAAGCTTT
AACTCGGCATTCTCTGGATCAAATATATTCATTTTTTCTCCACTTCTCAA
TCTAGAAATCATGTATTGAGATGTTTGCTTTGCAACCAAGAATATAAAGT
TCAAGATGTGAGTTCCATACGTTTCTTTTATTGCAATTCTTCTAATTGAA
TCCGTTCCTCGTTTTTGGTAAAAATCGTAATTATTTCCACTGTAATTAAT
TATTCTCGTAGTTATGActttaacaatatttttgaaacaaaaagggcAAA
ATAATCATCGTTAAAATTAAAGGGCTTAGATATTGACCTCGTTGATCAAG
GAGGAATGGAGATGCCTGTATAGCAGTCTGAATCGTAGACATCTACAAAG
CCCTAGGATACTTaatataaggagcacgaatccgttagtttACACATAAG
CTAGGTCAGCTAGTTTTAAAGTGAGGCCTGTTAGTATATGAAAACGTAAA
GATACTTCAGATGATGATCAAAACATGAAGCTTGGCTTGGCACAGATGAT
TTTAACCGCAGTAACACCAAATAGTGTCAACTCTTCAACTGCCAGATGAA
GTCATCAAGTGGCTGGGCGacgacgatgttatcgtccgttataGCGGGAT
AATAAAGTTTGGAAAATATAGATGCGCAGAGTTATTAAATAGCCgccgtt
atggcggtatacggaaaaagaCTCTACCGGCTGTAAACTCGTTTGTAATT
TTCGTCGGCTTTGCTTTGGGCCTATTTCTTAGTTAGTGATTTGTCTATAG
CATAGTCGATCAAATTCGATGTTTCATTTCCAATGCAGTTTTTTGCAGAT
TTTAATGTGCATTTTTTCATTAAGAATTAAATTAGctactcaaaatttat
tttagacAACTATTACTAACAAATTAATCAAAGATCATATAGACTTGATG
TTTCATTTTCAATGcatttttttgtagattttaatgtgacattttttcat
tttaagagtTAAATTAGCtactaaaaatttcttttagacAACTATTAACA
TATTTTCCTTAAAGAATAAATACTGAACTAACAAATCAATCAAAGATCAT
CTAATCGACTTATTTACAGATCAGAATCCTCATTTGGACTATATTTAGGG
ccaccttcatttttttttgggggggggggggNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggg
gggggggtcatatACTCATAGAGGTAATTAAAGTTAGATGGAGTAACAAC
TTTTCAGTAATAGCCAGCgaagtcataaaactctttagaaatttctttca
aatcggcctcctttgattaccaatccttgatagcaaaaatctgtcaagat
atagattataagaactaaagtaaagttattcttgtccaacgaaacctcgt
atttttaggtaaaatgcgaatttttttcgagcaataatttctttatagtc
ttaaaagaagtttttattctatcgggaaactttcgagaggtaaacttctt
caaattttgcgaattctttgttgtttgtggaaggttttttgctataaata
tctttacatctaaaatagcagctgcctcaaaatgttgatagaatatagtt
gaaagTTGGCAttagtacacccctgtctcagtgacccggtggcttttaaa
atttcaccgcggataaaaaattttctttggaaatccagtggggatttttc
aaagacagaaaATACCAGTGGGGACCAGcggggaaataaaaattttgaag
agctaCTTAGTGGGgatcttgaaaaattaaaagttttcagtggggattcc
CCGGAGGCAAATTTATCCCGTTTTTtccccggggacaaaatttttgactt
tttttttcagcgggtgggggtgcccagcgggtctgtgacacgggtgtgtc
attagtaaatatgtaaaaattgacaaaatttgccgAGGATTCCCCGATCa
gcaaacatttcaaattcgatgttctgtgcttattcttgcaaggttttctt
atgttttataaacaaaactttcatcacacaatgaacaaattaaaaatgta
gcgtgattttattcaaattctcttcgactcaagtattcccatgagcgaaa
gcaaaattaatggctttttcccaaagcaacaaagcaacagtttgctatca
atgatacattacaatagaatagtaggagtagtatctccatctatattttt
attacctccatgataTACTGTAGCTGGTTTGTTGTTGTTCAATCGACATC
TCTCATCACATTGTCTTCATCATGCGTTTAGAAACATTACTCAGGAGCAA
TCGATAGAATCGTAACAGAAGATTTGGAAGTCTTATGCAAGCACCATGAA
CAAGGGTGTCCGTGGACTGGTGCCATCAACGATTTTATGGTATGGTTCCA
ATGTTTCGATATCATTAAAAGCTTACCTTAACACGTTGAACTTACTCTAC
TCGTACAGGGAACTTTCCTTAGAGGAGGTCATTTTTGGAGAATCAAGGAC
cctccactggattttttatatatttttagataACATACTTAGCATGCGGT
AATCTGCTGCTTTGTGAACATATAATGATTGACCGCCGAATCTTTCAACA
TGAAATATCCCTTTTCAGTATCTTCATTAGCTTCGGATATaggtattttt
atttctatttcaaCAGCAACACGCCACCACGGATTGTCCATACGTCGAAA
TAACGTGCCGTTTTACGGGATGTGACGCACACGTCCTACGTATAGCGAAA
CAACGACATGAACAAAATTGTCCGATGAAAGAGATAAACTGCGATTATTG
CCATCAAGTAATTAAAGTTTCACGAGCACAGGTGCAAGTCTTGCAAATGT
TAAATACTTGTTATCGGAGAAGTGTAGATAGATACTCTTGTCCTATTCAT
GGTGTTTCCTTTCCATTATACCGTCAAGGAAAATGAGTTTTTCAGACAAA
GATTGGAGTTTActtcagaaaatgaaaaaaataattttagctAGTTGTAA
TTTTGCTAAAAGTGGTTCTCGTCAAGATCTAAATGTGTTAAAACGAACAT
ATAACTTTACTTGCGCAACCAGAATTTCATAAAAGGGACcgtggaaaact
ttttgaatattgaatctAGGCCAGTGCGCTTATCACGTTCGACAGTTCTC
AATcgctttttaacttttttattaaTCATTTTCTTAGGAGCATTATGGAG
AGTGTGGCTTCCATCCAACTATTTGTGGAAATACTGGATGTCAACATGTA
TGCCCAAAGAATCAGGTACTTCTCTATTTTAACCTCATTAACCGTAAGCT
TTATGTTTTTAGCCCCAGGTGAGTAGAATCTatcaccctcgattattttt
gatctagaaaagctACGACAATGAAAATTGGTACATTTATGTGCTCATAA
AACAAACTTCCATTCcaggaagaaaaagatttttttcaggttttcataGT
GTTTGGTTAAAAAAGGATTGAAATAAGTCTTTCTAAGCTATCTCAGATAT
ATTCATCAATAAATCACTAATCCTCTACGTggataaattattttcataag
TTTTAACGGTACACTTCATCTTCTGATCTTTAGATTGCACACCATCAATC
GACAGATTGTTTGTATCAAAAAATCTCTTGTTCTTTCAATGATGTTGGAT
GCAAAGTGAAGGTGAGTGATCTGCTTCGGGAATtcgaccattgagtttaa
agtcctgaaggggctagagtagaaaatctttgattgggaatgaaaccact
tatttcccatctgaAACGCGTTGCGCACGTGAATTTCACACAAACGCCAT
ATTGAAAGTGAAATCCACCAACGCCAGAAATGCCATGTGAAAACAAAGTa
agcgctagattcaatccatcatTCTAAAAGGGTTGCAAGCTTCGCTTTTT
CTTGCATTAAGAAGGTTGAGAATTCCTTTCGGGTTTCAAACTCAATGGTG
CGAAAGGTAAAGGTTGGTCTCTTTAAGGGTTACAAAAAATCATGATTTCC
CAtgtaaagtcaaaaaaatctaaaaggtTTGGACATTTTTCGGAAATTGT
CACACCGTTTTACCTCGGGTCGGTTTACGGAGGCTCATTCCGCACATACC
CGACATTATCTAAACCTAATACCCCCCCCCTGGGAGGAGGTCCCTTTCTT
GAATGTAATATTACGTTTTCCTCTTTACATCTGTCTTCACCATGCCTGAC
TTAATACTTATTAGATCTCTCGATTCTCGAAATATAGTCAATTCATTTTA
TGATCTGAGATAACACGCCATAGATATTTTCAGTCTGCCCCTTTAAATCT
ATAGATGCGACGCTCCTAACAGTAATTTGATCTTACTTTCCTATCGCTAG
TAATGAGCTGAGTTGGTAGTCTATAATAGATGTCACGGTTTTTTATGCAG
TAGTGTCTATTTCTTGTGACTTTTTCGGATGTTTGGAGCCCAGGTTCTCG
AGCTCTAAGCATCCTGAGAACTGGTTTATTGATATCTATTTAGGTGCTGA
GAAAAGATTTACTTGATCACGAAGCTGCTGCAAACGTTTCACATACCAAA
TtgcttttacaaaaatatcttcaagcAAATACTGAACTcgcaaaaacaaa
acaggacCTCGTAGAAACGAAAAAAACTCTCAAAGTGACAAGTGATGAAT
TGTACGCAACGAAGGAACAATTGAACATTACGAATAATGAACTCTTAGAC
GCAAAAACCAAACTTCAAAATGTGGAAACAAAATTACGAGAATTTAACAA
TGAAATTGaggaaacaaaaagaaattatttgccACCAAAGAAAACACGAA
ATGTGGTAAAAACTTTAGCATCACAGCAACACAAGCCTATCGTTTCCTCA
CATCCCAAACCTTTGGCAAAACTCACATTCCAAAAAGACGACCAAGAAAt
caattcacttttttcttcctCACAATCAATCCCAAATTATGCAAGAAGAT
TAGAAAACCTTTCATCACAAATGGAGAAAGGAAAACTTTATTTCCAccaa
caaaacattttcttcaaactttcaccatttCGTAATAATGATAGAGATTT
TTTCGTCAGTCATGTCACAAACATCAACGAGTTTCGAGGTCATTCATACA
ACTTCTTCAACGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073791-exon-scaffold_98-1491911889:135349..135391 | TCONS_00073791-exon-scaffold_98-1491911889:135349..135391 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1510915933:135349..135391 | TCONS_00073791-exon-scaffold_98-1510915933:135349..135391 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1575043694:135349..135391 | TCONS_00073791-exon-scaffold_98-1575043694:135349..135391 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1491911889:135456..135624 | TCONS_00073791-exon-scaffold_98-1491911889:135456..135624 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1510915933:135456..135624 | TCONS_00073791-exon-scaffold_98-1510915933:135456..135624 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1575043694:135456..135624 | TCONS_00073791-exon-scaffold_98-1575043694:135456..135624 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1491911889:142654..142705 | TCONS_00073791-exon-scaffold_98-1491911889:142654..142705 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1510915933:142654..142705 | TCONS_00073791-exon-scaffold_98-1510915933:142654..142705 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1575043694:142654..142705 | TCONS_00073791-exon-scaffold_98-1575043694:142654..142705 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1491911889:144930..145037 | TCONS_00073791-exon-scaffold_98-1491911889:144930..145037 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1510915933:144930..145037 | TCONS_00073791-exon-scaffold_98-1510915933:144930..145037 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1575043694:144930..145037 | TCONS_00073791-exon-scaffold_98-1575043694:144930..145037 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1491911889:145315..145479 | TCONS_00073791-exon-scaffold_98-1491911889:145315..145479 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1510915933:145315..145479 | TCONS_00073791-exon-scaffold_98-1510915933:145315..145479 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1575043694:145315..145479 | TCONS_00073791-exon-scaffold_98-1575043694:145315..145479 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1491911889:145836..145913 | TCONS_00073791-exon-scaffold_98-1491911889:145836..145913 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1510915933:145836..145913 | TCONS_00073791-exon-scaffold_98-1510915933:145836..145913 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1575043694:145836..145913 | TCONS_00073791-exon-scaffold_98-1575043694:145836..145913 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1491911889:146232..146309 | TCONS_00073791-exon-scaffold_98-1491911889:146232..146309 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1510915933:146232..146309 | TCONS_00073791-exon-scaffold_98-1510915933:146232..146309 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1575043694:146232..146309 | TCONS_00073791-exon-scaffold_98-1575043694:146232..146309 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1491911889:147142..147762 | TCONS_00073791-exon-scaffold_98-1491911889:147142..147762 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1510915933:147142..147762 | TCONS_00073791-exon-scaffold_98-1510915933:147142..147762 | Clytia hemisphaerica | exon |
TCONS_00073791-exon-scaffold_98-1575043694:147142..147762 | TCONS_00073791-exon-scaffold_98-1575043694:147142..147762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_98 | supercontig | scaffold_98:135349..147762 + |
Blast
BLAST of TCONS_00073791 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 6.250e-16 Identity = 77/341 (22.58%), Postives = 150/341 (43.99%), Query Frame = 1
Query: 37 QAGGYEFKVKGKLPTTCQCLICQELIRECTELPCHHPYCKSCLLRWEDQKGEENERLGRNHVLRCLLCNQEYKVQDKHYSGAIDRIVTEDLEVLCKHHEQGCPWTGAINDFMQHATTDCPYVEITCRFTGCDAHVLRIAKQRH-EQNCPMKEINCDYCHQVIKVSRAQEHYG-ECGFHPTICGNTGCQHVCP-----KNQIAHHQSTDCLYQKISCSFNDVGCKVKVLRKDLLDHEAAANVSHTKLLLQKYLQANTELAKTKQDLVETKKTL-----KVTSDELYATKEQLNITNNE--LLDAKTKLQNVETKLREFNNEIEETKRNYLPPKKTRNVVKTL 1017
+ GGY+ K + +C C ++ + C H +C+SC+ L + +C C QE V+DK + + L++ C++ +GC + + H DC + E+ C C VLR + H E+ C +E C +C + + Q+H +C C C H C +++++ H S +C+ +CSF GC + + + HEA++ V H LL + +++ + + VE K++ ++ S E+ +++ + NNE +L + + + KL+E + EI ++N+ ++ V++L
Sbjct: 35 EQGGYKEKFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCM-----------AALLSSSSPKCTAC-QESIVKDKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHEDTDCP-----CVVVSCPHKCSVQTLLRSELSAHLS-ECVNAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWEEADSMKSSVESL 357
The following BLAST results are available for this feature:
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