TCONS_00073787 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073787
Unique NameTCONS_00073787
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073787 ID=TCONS_00073787|Name=TCONS_00073787|organism=Clytia hemisphaerica|type=transcript|length=619bp
ATTTTCCCTTGGTTATGCTTCCTTTTGAAAAGCATGTTtataacagaaag
ccctatctgaGCTTAAACtactcaaaatctttgatcaggtgaAAGTAATG
GGATGGGATCATCACATGAAGATGGTCTCCCAACGATATCTCGTGGTGTA
GGTATATTACATTCAACTAAATTCCTAGTCCCACCTGCCCTCCTATgtaa
tttttatcattctttTATTCAGTCCCACCTGTTATATGGTATCCTTGCCT
GGGGATCACCATTGAGTCACCTTACAAACATAAACAAACTTGTAAATAAG
GCTGAAAATATAATACAAAATCACACAAATACTAAAATTCTACACATTGA
CCAACTTTACCAGATTGTAAGCTGTAAGCTAATATTTAAACTTAAACAAA
agactcttccagaaaatgtcaaaaaatacatAAACGACGCTaaccagtcg
ggtgtttaagataaaaactgcaattattgctcttttcggaaattattgcc
gaaaacggcaatttttttaacgatgaaatgctgaatcagctaaatgtgtt
gtccttttaagggcaaagatgtcagaggtgtttgaaaatagtaaaattgc
atcgagaaaaaggtttttc
Run BLAST on NCBI

transcript from alignment at scaffold_98:117276..117894+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073787 ID=TCONS_00073787|Name=TCONS_00073787|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at scaffold_98:117276..117894+ (Clytia hemisphaerica)
ATTTTCCCTTGGTTATGCTTCCTTTTGAAAAGCATGTTtataacagaaag
ccctatctgaGCTTAAACtactcaaaatctttgatcaggtgaAAGTAATG
GGATGGGATCATCACATGAAGATGGTCTCCCAACGATATCTCGTGGTGTA
GGTATATTACATTCAACTAAATTCCTAGTCCCACCTGCCCTCCTATgtaa
tttttatcattctttTATTCAGTCCCACCTGTTATATGGTATCCTTGCCT
GGGGATCACCATTGAGTCACCTTACAAACATAAACAAACTTGTAAATAAG
GCTGAAAATATAATACAAAATCACACAAATACTAAAATTCTACACATTGA
CCAACTTTACCAGATTGTAAGCTGTAAGCTAATATTTAAACTTAAACAAA
agactcttccagaaaatgtcaaaaaatacatAAACGACGCTaaccagtcg
ggtgtttaagataaaaactgcaattattgctcttttcggaaattattgcc
gaaaacggcaatttttttaacgatgaaatgctgaatcagctaaatgtgtt
gtccttttaagggcaaagatgtcagaggtgtttgaaaatagtaaaattgc
atcgagaaaaaggtttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045833XLOC_045833Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073787-exon-scaffold_98-1491911889:117276..117894TCONS_00073787-exon-scaffold_98-1491911889:117276..117894Clytia hemisphaericaexon
TCONS_00073787-exon-scaffold_98-1510915933:117276..117894TCONS_00073787-exon-scaffold_98-1510915933:117276..117894Clytia hemisphaericaexon
TCONS_00073787-exon-scaffold_98-1575043694:117276..117894TCONS_00073787-exon-scaffold_98-1575043694:117276..117894Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:117276..117894 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.299997	0.31633	0.219864	0	1.01422	0.57062	0.681388	0.108001	0.399947	0.19085	1.13302	0.689994	0.825715	1.36937	0.370761	0.385732	0.754343	0.210487	0.472615	1.0273	0.727129	0.81538	0.13513	0.396513	1.30556	0.915233	0.861496	0.140912	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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