TCONS_00073786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073786
Unique NameTCONS_00073786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3186

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073786 ID=TCONS_00073786|Name=TCONS_00073786|organism=Clytia hemisphaerica|type=transcript|length=3186bp
ttcattgtcaattttttaaatatgatatttaaaagacaaaaataaaaaaa
ttacatttatgccaaaaatttctttaataataattttgctaaaaatgaTG
TAGGGTAGATTACTCAAAGAGAAACTGAGAGAAAGAGTTCCTATAATTTG
GTAATTTAATACGGACTTGACATCAGCAATTCAACACGACGAAATGATCA
AGTTCATTGCAAGGAAAAGCACGGCAGAGGAAAAGGCATATGATACTACG
TGATACTatagaaaaaagcaaaattatctaataataaaatcaatcaaaat
ataCAGAactaaaaatgtagaaaaaatagcataaaaatatcGTGCGTGAC
ACAAtgccacttttcaaaaaaacccCAAAATTTTCATCTCCAAAAACCAA
TTAAGATGATGCTTTTCCGTCTGTTTTAGTCACGTGATCGACCGATTCAT
TATTCGCTGTTGTCGTGGCAACAATCGCCGTAGGCCTTGTCAATTGCGAG
GACAAAACCGCCTTATCGACTAATTGGGGCGGTGAGGCGGGAAAAGAGGG
CGACATTGAATTCTCATGACGTGGCGAAGTGACAACCTGTAATGTTTGTG
TGAGAGGCGACTTAATTGGAGTGGGTGTTCGTGTAGGCGTTATAACTTGC
AGGGTGGCGCTTTCACGCCCTGAAGAGATCTTCTTCTTTTCCAAGTCGAT
TGTTAAAGGGTTGCTCACAACGGCCGGTGAATATACCGGACTACTGATCG
GCGATTGGAATCGTTCACCCATCAGTCTCTCATCTCCAGGTGTTCCACGG
TTACTGGGAGAATGCTTTGATTGAATATCGTTCTCAGCGCGCGAGAAGGG
TGGCGGTGAGGTGATGTTGGGCGTTCGTCTGTTGTTAGTGGGCGAAAGAA
GGCGTTCCGAAGTCTTGCTCCCTGTTGAAGAAATGACGCTGGCAGACTTG
ATTCGTGGTGACATTACACGGTCCGCTATCGGTGAAGAGCGTGGTTCACT
TAGCGAAAGCCTGTCCACAGGTGATTTGATTCGATCCTTAGAAAGATTCG
CGTGTTCATAAGGTGTTGATCCGAGTCTTTCGGAGTTTGGCGAGACAACT
CGGTCAAGAGGAGGGGGGCCTTCCATTGGTCGTGGTGATTTCATGCGGAG
GACTGGTGAAGTGATTCCAGGAGAAGCAAACTCTCTCGCGGGTGGAGATA
CGATTCTCGAAGGTGGAGTTGGATGATTCTTTGGGGATTTTATGCGGTCG
AGTGGCGGTGCTTCCCTCGGAATAGGCGATTTAGCTCTCGAAGAAGGGGA
AGACGTTCGGTCGGTTGGTGATTTCATTCTACTTATGTTTTGTGAAATAA
CACTCTCCAACGGAGACGGTCTTCGATCAATCAACGGTGATGAGTGTTTC
GATCTTGGAGATGAAAGTTTCTCCAATGGAGGAGTGACCCTGGTCAAGGG
TGGTGGTGAGGTCAGTCTCTCTGATTGTGAAGGTGAGAGAAGTCTCAATG
AGTGAGGTGGTCTGTTGTCTGGTGAGTGGATGACAGGTTCCCGTGGAGAA
ATGGAAGACGATTGCCGACCGGATGATCGAGGTGACGGATCTCTTGCAGG
GACATCGAGTGAAGGTTTCCTTGACGATCGTGGTGAAGGGGTCAAGTCTA
ACGGTGAAGGTCCGCGAGGTGACGTAATTCGTTCAGAATTTCTCGATGAT
CGTGGCGAGAAGAGCCGTTCAGTTGAGTGGTCGCGCGGCGAAACTATTCT
CTCGATTGGGTGGTCGCGCGGCGAAACGATTCTTTCAGATGACGAGCTTT
TAAATGAGCGATAAGTGTCATAAGGTAGGAAATCTCTTGCAGATGGAGAT
GCATCTCTTGGTGGATAACGGTCTTTTGGACGTGACTCTGGTAGCTGATC
GTATTGAGAGTGAAGTATTCCTGAAGTTGGCGAAAGTAGCCTATCAGATG
GCGAGAAAGGTCTGTCGGCAGTGGATGATCTTCGTGTTTGACGTGATGAA
GTCAATCTGTCTGAGGGCGGAGATCGAATCCTCTCTGAACGCGAGTTCGG
TCTTTCCAAAGGCGATTTCATTCTTTCCAACGGCGGAGACTTTAATACTG
ATTGGAGTTCTGGTGGATGACCTTCAGCATTCTTTTCAACAGGCGATTTG
ATGGTTGAGCAAATAACTGAAGAGATAACTGACGCTCTCCGAGGCGGTGG
ACTAGTGGGCGTTTCTTCAGGTGAGTCTTTCTTTTGCAATGCCCTTGGAC
TTTTATCGGCATTTccactttttaaaatatttagcaGTTTGGAATCGTTT
GATGGTTTCACAGTTAAGGGAACACCTTTGAATTTGGATGTCGGTAATTG
AGCAGAGGCAGCCttcgatttttcttttaaagtgGAAATGACGTCAGAGA
GCTTGCTGGAACTGGTCACAGGTTTAGATGGTTTGTTGAATGACACTGAA
TTTACGGTGGGCTTGTTCTTTGAGAAAGATACAGCAAGTGACGAATCGAG
AACGCTACTTTTCTCGACAGATTTAGCAAGATCTTTAGTGATGTCTGCAA
GAGACTTGGAACGTTTACCAGGTGGCTTAGAAACCGGTTCCTTCATTCCT
TTCTCCTGTGTTAAGTTAGAGATGACGTCTGAAAGCCTCTTTGTTGGTTT
GGTAATGGGGGGAGCGGGGGATGTCTCCATGGCTTTCGAAGGTTCCTTCT
TTTCCGTTGATTCTGGTTGGGAATTCATTTTCTCTTTGATTTTGTCGGAC
ACACCGGACTGTTCCATTTTCTCTTTCAGCCCTTGGATTTTCATCTCCAG
TAACCCCAATCCCTTCTTGCGAGCTGGCTGTTTGCGTTGTTGTTGCTGCT
GAGAGTTTTGTCGTACTGCTTCGGTTGAGATTTCGATGACTGGTCGTTCA
ACTTCTGCTGGTTTCGATTTCTTGGCTTTGGAGGGTGATGATAATTCATT
CGCAACAGGGATCGTTTCCGCGCTACGTTTGAGAGTTGGTTCGTCTTGCA
CACGtcttttttcttgcctatctgGGAAAGAAACAGGAGAGCGCGACCGC
CTCAATCTGTGCTCTTCGTGAACTCTGGGAGACTTGATGATCGGTTTCTT
GGCTTCATCTCTGGGCGGCATACTTCGTGATAATGGCTGGTATTGAACAG
GGGCGTCGACGGGAGAAGAACGTATCGGAGGTGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_98:27004..30263+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073786 ID=TCONS_00073786|Name=TCONS_00073786|organism=Clytia hemisphaerica|type=transcript|length=3260bp|location=Sequence derived from alignment at scaffold_98:27004..30263+ (Clytia hemisphaerica)
ttcattgtcaattttttaaatatgatatttaaaagacaaaaataaaaaaa
ttacatttatgccaaaaatttctttaataataattttgctaaaaatgaTG
TAGGGTAGATTACTCAAAGAGAAACTGAGAGAAAGAGTTCCTATAATTTG
GTAATTTAATACGGACTTGACATCAGCAATTCAACACGACGAAATGATCA
AGTTCATTGCAAGGAAAAGCACGGCAGAGGAAAAGGCATATGATACTACG
TGATACTatagaaaaaagcaaaattatctaataataaaatcaatcaaaat
ataCAGAactaaaaatgtagaaaaaatagcataaaaatatcGTGCGTGAC
ACAAtgccacttttcaaaaaaacccCAAAATTTTCATCTCCAAAAACCAA
TTAAGATGATGCTTTTCCGTCTGTTTTAGTCACGTGATCGACCGATTCAT
TATTCGCTGTTGTCGTGGCAACAATCGCCGTAGGCCTTGTCAATTGCGAG
GACAAAACCGCCTTATCGACTAATTGGGGCGGTGAGGCGGGAAAAGAGGG
CGACATTGAATTCTCATGACGTGGCGAAGTGACAACCTGTAATGTTTGTG
TGAGAGGCGACTTAATTGGAGTGGGTGTTCGTGTAGGCGTTATAACTTGC
AGGGTGGCGCTTTCACGCCCTGAAGAGATCTTCTTCTTTTCCAAGTCGAT
TGTTAAAGGGTTGCTCACAACGGCCGGTGAATATACCGGACTACTGATCG
GCGATTGGAATCGTTCACCCATCAGTCTCTCATCTCCAGGTGTTCCACGG
TTACTGGGAGAATGCTTTGATTGAATATCGTTCTCAGCGCGCGAGAAGGG
TGGCGGTGAGGTGATGTTGGGCGTTCGTCTGTTGTTAGTGGGCGAAAGAA
GGCGTTCCGAAGTCTTGCTCCCTGTTGAAGAAATGACGCTGGCAGACTTG
ATTCGTGGTGACATTACACGGTCCGCTATCGGTGAAGAGCGTGGTTCACT
TAGCGAAAGCCTGTCCACAGGTGATTTGATTCGATCCTTAGAAAGATTCG
CGTGTTCATAAGGTGTTGATCCGAGTCTTTCGGAGTTTGGCGAGACAACT
CGGTCAAGAGGAGGGGGGCCTTCCATTGGTCGTGGTGATTTCATGCGGAG
GACTGGCGAAGTGATTCCATGTCCAGGAGAAGCAAACTCTCTCGCGNCAT
TGGTCGTGGTGATTTCATGCGGAGGACTGGTGAAGTGATTCCAGGAGAAG
CAAACTCTCTCGCGGGTGGAGATACGATTCTCGAAGGTGGAGTTGGATGA
TTCTTTGGGGATTTTATGCGGTCGAGTGGCGGTGCTTCCCTCGGAATAGG
CGATTTAGCTCTCGAAGAAGGGGAAGACGTTCGGTCGGTTGGTGATTTCA
TTCTACTTATGTTTTGTGAAATAACACTCTCCAACGGAGACGGTCTTCGA
TCAATCAACGGTGATGAGTGTTTCGATCTTGGAGATGAAAGTTTCTCCAA
TGGAGGAGTGACCCTGGTCAAGGGTGGTGGTGAGGTCAGTCTCTCTGATT
GTGAAGGTGAGAGAAGTCTCAATGAGTGAGGTGGTCTGTTGTCTGGTGAG
TGGATGACAGGTTCCCGTGGAGAAATGGAAGACGATTGCCGACCGGATGA
TCGAGGTGACGGATCTCTTGCAGGGACATCGAGTGAAGGTTTCCTTGACG
ATCGTGGTGAAGGGGTCAAGTCTAACGGTGAAGGTCCGCGAGGTGACGTA
ATTCGTTCAGAATTTCTCGATGATCGTGGCGAGAAGAGCCGTTCAGTTGA
GTGGTCGCGCGGCGAAACTATTCTCTCGATTGGGTGGTCGCGCGGCGAAA
CGATTCTTTCAGATGACGAGCTTTTAAATGAGCGATAAGTGTCATAAGGT
AGGAAATCTCTTGCAGATGGAGATGCATCTCTTGGTGGATAACGGTCTTT
TGGACGTGACTCTGGTAGCTGATCGTATTGAGAGTGAAGTATTCCTGAAG
TTGGCGAAAGTAGCCTATCAGATGGCGAGAAAGGTCTGTCGGCAGTGGAT
GATCTTCGTGTTTGACGTGATGAAGTCAATCTGTCTGAGGGCGGAGATCG
AATCCTCTCTGAACGCGAGTTCGGTCTTTCCAAAGGCGATTTCATTCTTT
CCAACGGCGGAGACTTTAATACTGATTGGAGTTCTGGTGGATGACCTTCA
GCATTCTTTTCAACAGGCGATTTGATGGTTGAGCAAATAACTGAAGAGAT
AACTGACGCTCTCCGAGGCGGTGGACTAGTGGGCGTTTCTTCAGGTGAGT
CTTTCTTTTGCAATGCCCTTGGACTTTTATCGGCATTTccactttttaaa
atatttagcaGTTTGGAATCGTTTGATGGTTTCACAGTTAAGGGAACACC
TTTGAATTTGGATGTCGGTAATTGAGCAGAGGCAGCCttcgatttttctt
ttaaagtgGAAATGACGTCAGAGAGCTTGCTGGAACTGGTCACAGGTTTA
GATGGTTTGTTGAATGACACTGAATTTACGGTGGGCTTGTTCTTTGAGAA
AGATACAGCAAGTGACGAATCGAGAACGCTACTTTTCTCGACAGATTTAG
CAAGATCTTTAGTGATGTCTGCAAGAGACTTGGAACGTTTACCAGGTGGC
TTAGAAACCGGTTCCTTCATTCCTTTCTCCTGTGTTAAGTTAGAGATGAC
GTCTGAAAGCCTCTTTGTTGGTTTGGTAATGGGGGGAGCGGGGGATGTCT
CCATGGCTTTCGAAGGTTCCTTCTTTTCCGTTGATTCTGGTTGGGAATTC
ATTTTCTCTTTGATTTTGTCGGACACACCGGACTGTTCCATTTTCTCTTT
CAGCCCTTGGATTTTCATCTCCAGTAACCCCAATCCCTTCTTGCGAGCTG
GCTGTTTGCGTTGTTGTTGCTGCTGAGAGTTTTGTCGTACTGCTTCGGTT
GAGATTTCGATGACTGGTCGTTCAACTTCTGCTGGTTTCGATTTCTTGGC
TTTGGAGGGTGATGATAATTCATTCGCAACAGGGATCGTTTCCGCGCTAC
GTTTGAGAGTTGGTTCGTCTTGCACACGtcttttttcttgcctatctgGG
AAAGAAACAGGAGAGCGCGACCGCCTCAATCTGTGCTCTTCGTGAACTCT
GGGAGACTTGATGATCGGTTTCTTGGCTTCATCTCTGGGCGGCATACTTC
GTGATAATGGCTGGTATTGAACAGGGGCGTCGACGGGAGAAGAACGTATC
GGAGGTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045832XLOC_045832Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073786-exon-scaffold_98-1491911889:27004..28127TCONS_00073786-exon-scaffold_98-1491911889:27004..28127Clytia hemisphaericaexon
TCONS_00073786-exon-scaffold_98-1510915933:27004..28127TCONS_00073786-exon-scaffold_98-1510915933:27004..28127Clytia hemisphaericaexon
TCONS_00073786-exon-scaffold_98-1575043694:27004..28127TCONS_00073786-exon-scaffold_98-1575043694:27004..28127Clytia hemisphaericaexon
TCONS_00073786-exon-scaffold_98-1491911889:28202..30263TCONS_00073786-exon-scaffold_98-1491911889:28202..30263Clytia hemisphaericaexon
TCONS_00073786-exon-scaffold_98-1510915933:28202..30263TCONS_00073786-exon-scaffold_98-1510915933:28202..30263Clytia hemisphaericaexon
TCONS_00073786-exon-scaffold_98-1575043694:28202..30263TCONS_00073786-exon-scaffold_98-1575043694:28202..30263Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:27004..30263 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (4.84385 tpm) - - (17.1092 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.31006	7.04838	8.57936	7.95258	11.0134	8.09959	6.18104	6.85814	6.84848	7.98468	7.1618	4.84385	5.87999	7.09785	6.26784	6.449	10.0056	8.41778	6.87226	5.98558	8.11423	7.74742	12.4947	7.84231	10.2506	10.8583	8.27342	9.32985	17.1092	15.416
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50010001500200025003000Sequence
Match NameE-valueIdentityDescription
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