TCONS_00073773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073773
Unique NameTCONS_00073773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073773 ID=TCONS_00073773|Name=TCONS_00073773|organism=Clytia hemisphaerica|type=transcript|length=752bp
AGACAAGAGACCGCCCGCGACTCTCCCTAGTTCTCTCGTTCCGGTGTTTA
TTCGACCCAGACCTCGCGTGGTTTCTTCTTCTTCGACCCTGCTCTTCGGT
CGTGAGTTTTCTTCTtagttattaaaaaaatttactatttacaaGAAATT
ATTAGCTTAACGAAGACATATATTCTACAACAATGCCTACAAAGAAGTCC
AACGCAAACGAACACACCGACCGTGACCACTCCATAGCCGACTGGGGGAA
ATCATCCATCACTGGTTTAAGAAACAAACTCAAAGAGCTGCAACTCTCAC
ATGTTGGTAAGAAAATCGAACTACAAACACGATTATTTGAACATTTCAAC
CCTCCTACCGACACTACCAACATCCAGCTATCAGACGTATTAGAGGAATT
CCGATCAATGAGAACCGAATTAGATACACTTAAGAACAACATTCATAATA
ATAACAACATTAATAAAACTACTCAAAACAATCTAATCACCTCCGTCGAA
AGTCCGACACACGTCAATTTCGAGACTGGACAAAGTCGAGACCCAATTAC
ACCGAATCAAAACAACCCAACACTTACTCAgcaaaaaaacagaaacaaGA
ATTCTGCCATTCTCATAACAAATGACGAACAAGATGAGCCCTATATCGAA
GAacagcaaaatgtttttggttttgacCTTCAACAAAGCTTATCACAACA
ACCAACACAAGGTACATTTAATTATAGTAATCCCTACAGCCCACCAGGTC
TT
Run BLAST on NCBI

protein sequence of TCONS_00073773-protein

>TCONS_00073773-protein ID=TCONS_00073773-protein|Name=TCONS_00073773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MPTKKSNANEHTDRDHSIADWGKSSITGLRNKLKELQLSHVGKKIELQTR
LFEHFNPPTDTTNIQLSDVLEEFRSMRTELDTLKNNIHNNNNINKTTQNN
LITSVESPTHVNFETGQSRDPITPNQNNPTLTQQKNRNKNSAILITNDEQ
DEPYIEEQQNVFGFDLQQSLSQQPTQGTFNYSNPYSPPGL
Run BLAST on NCBI

transcript from alignment at scaffold_97:747574..748325

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073773 ID=TCONS_00073773|Name=TCONS_00073773|organism=Clytia hemisphaerica|type=transcript|length=752bp|location=Sequence derived from alignment at scaffold_97:747574..748325 (Clytia hemisphaerica)
AAGACCTGGTGGGCTGTAGGGATTACTATAATTAAATGTACCTTGTGTTG
GTTGTTGTGATAAGCTTTGTTGAAGgtcaaaaccaaaaacattttgctgt
TCTTCGATATAGGGCTCATCTTGTTCGTCATTTGTTATGAGAATGGCAGA
ATTCttgtttctgtttttttgcTGAGTAAGTGTTGGGTTGTTTTGATTCG
GTGTAATTGGGTCTCGACTTTGTCCAGTCTCGAAATTGACGTGTGTCGGA
CTTTCGACGGAGGTGATTAGATTGTTTTGAGTAGTTTTATTAATGTTGTT
ATTATTATGAATGTTGTTCTTAAGTGTATCTAATTCGGTTCTCATTGATC
GGAATTCCTCTAATACGTCTGATAGCTGGATGTTGGTAGTGTCGGTAGGA
GGGTTGAAATGTTCAAATAATCGTGTTTGTAGTTCGATTTTCTTACCAAC
ATGTGAGAGTTGCAGCTCTTTGAGTTTGTTTCTTAAACCAGTGATGGATG
ATTTCCCCCAGTCGGCTATGGAGTGGTCACGGTCGGTGTGTTCGTTTGCG
TTGGACTTCTTTGTAGGCATTGTTGTAGAATATATGTCTTCGTTAAGCTA
ATAATTTCttgtaaatagtaaatttttttaataactaAGAAGAAAACTCA
CGACCGAAGAGCAGGGTCGAAGAAGAAGAAACCACGCGAGGTCTGGGTCG
AATAAACACCGGAACGAGAGAACTAGGGAGAGTCGCGGGCGGTCTCTTGT
CT

Coding sequence (CDS) from alignment at scaffold_97:747574..748325

>TCONS_00073773 ID=TCONS_00073773|Name=TCONS_00073773|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_97:747574..748325 (Clytia hemisphaerica)
AAGACCTGGTGGGCTGTAGGGATTACTATAATTAAATGTACCTTGTGTTG
GTTGTTGTGATAAGCTTTGTTGAAGgtcaaaaccaaaaacattttgctgt
TCTTCGATATAGGGCTCATCTTGTTCGTCATTTGTTATGAGAATGGCAGA
ATTCttgtttctgtttttttgcTGAGTAAGTGTTGGGTTGTTTTGATTCG
GTGTAATTGGGTCTCGACTTTGTCCAGTCTCGAAATTGACGTGTGTCGGA
CTTTCGACGGAGGTGATTAGATTGTTTTGAGTAGTTTTATTAATGTTGTT
ATTATTATGAATGTTGTTCTTAAGTGTATCTAATTCGGTTCTCATTGATC
GGAATTCCTCTAATACGTCTGATAGCTGGATGTTGGTAGTGTCGGTAGGA
GGGTTGAAATGTTCAAATAATCGTGTTTGTAGTTCGATTTTCTTACCAAC
ATGTGAGAGTTGCAGCTCTTTGAGTTTGTTTCTTAAACCAGTGATGGATG
ATTTCCCCCAGTCGGCTATGGAGTGGTCACGGTCGGTGTGTTCGTTTGCG
TTGGACTTCTTTGTAGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045819XLOC_045819Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073773-exon-scaffold_97-1491911889:747574..748325TCONS_00073773-exon-scaffold_97-1491911889:747574..748325Clytia hemisphaericaexon
TCONS_00073773-exon-scaffold_97-1510915933:747574..748325TCONS_00073773-exon-scaffold_97-1510915933:747574..748325Clytia hemisphaericaexon
TCONS_00073773-exon-scaffold_97-1575043694:747574..748325TCONS_00073773-exon-scaffold_97-1575043694:747574..748325Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073773-proteinTCONS_00073773-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:747574..748325 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30673	1.14684	1.10966	1.59226	12.6878	10.0261	16.1281	23.1202	4.82145	4.77386	8.27433	5.54756	7.56087	9.02533	5.34244	6.88787	5.54241	6.93761	10.108	10.7208	5.6854	4.25214	1.57319	3.13294	6.94475	8.0136	5.017	1.81663	0.870222	1.84712
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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