TCONS_00073757 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073757
Unique NameTCONS_00073757
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073757 ID=TCONS_00073757|Name=TCONS_00073757|organism=Clytia hemisphaerica|type=transcript|length=1491bp
CAGGTGAAGTGTTGTTTAGCTTCTGAACGGATTTCTTTATTTCATCATCG
GTAGGTTCATGGTCACATCCATGGACAATATCATGGTGGGGAATTGTGTC
AAGGACAGATTGGTCGAAATTTGCCTCCCTATTGTAGAGATGATTAAAGT
GTTCGTAAAAGACTGATGCATTTTCTTGTGGTGTTGCACATAAGGTACCG
TCTGGCTTTTTCATATGTCTTGATACTGAAGGTTTAGGTTTTGAAAGCCC
ACATTTGAGGATCTTGAGGGATTCCCAAGCTTTCTTTGTACCTTGATAAC
GGTTCACAGTGACACAATGGTTAAGTATCCAATCGTTCTTTGATTTAATT
ATCATGgcttttagattttttctagCTAGACGGAGACGATTAGTAGAAGA
TCACGTCGATCGTTTTAAAACGTCCTTCATAGCTTGATTTCGGGAGTGAA
TCAACGAAAGGAGCTTTGAAGAATTAGCTTCGAACCAGCCGGGTtgactt
ttgtttttctttgggaGCGTTTCTTCGCATACCTTTTTAATTGTGCTTGA
GAACATTTCGTATCCAGGAGAAGTAGAAAAGTTCAGTTTTTGTGCTACAT
TTCCACAAAAATCATTCTGTTTAGTCACATTTGAAAGCACAGAGAGGTCG
AGGTTGATCATTTTTTGGCGTGGTTCAGATTTCTTTTTTAACCGTTTCAT
AAGCTTAAGTTTGATANTTTTGATGGTCAGTTAAAAGAAGTCGAATCGCT
ACTACTCTTGCACCAAAGTTCGTGTGCTTTTCGTAACCTCCTGCTTTCCA
CGCAGCGTCACCATCTGCGTTTAAGACGATTGAAACTCCTTGGGAACCTC
TTTTACCGCGCTGTGTACTTTCGTCAAGACCGGACGAGACAATTTTAAAG
AAGCCGTGCTCCAACAATTCGTTTCCACTTCGCCATGTTTCTTGGACACA
CATTGCAATAGCGTTTCTTTCCTTCATTACATTTAACAAAATTTCGATAC
GAGTATCATTTTTCATACCCCGAACGTTTTGAGATAATATTTTGACTGTC
CTGATAATATGTCTGTTTCTTACTTTTGCCATTACTGCCTTCCAAGCTTG
CGAGGCCTGGAGGAACAGCGGAGATTAAAAGTCCAATTCTactagactag
caagcgtctgtctttccttggacacagcaACGCGGGAATAgcgcttataa
taaagagttcttataaaaaatagaaattgccgcgggagagtggattggaa
agacattgttgtattcagtgaacatataaaaaaaatagatcCCATTGAAA
GTTTATTCTGCagcgacgtggtttactagtctaaatTCTACTTGAGTGGA
AACCAGTGTGATTCGCGTTAACTCGAAGTCTGATGAAAAGGACGTCTCCT
TCTTCTGTGCTAGATGTTTGTCATATCCATATTGTGTTGTTCCTCTTCTT
CTGGGTGTGGTGGCTGACGGACCTTGTGATGCCGGTTCAGG
Run BLAST on NCBI

protein sequence of TCONS_00073757-protein

>TCONS_00073757-protein ID=TCONS_00073757-protein|Name=TCONS_00073757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MAKVRNRHIIRTVKILSQNVRGMKNDTRIEILLNVMKERNAIAMCVQETW
RSGNELLEHGFFKIVSSGLDESTQRGKRGSQGVSIVLNADGDAAWKAGGY
EKHTNFGARVVAIRLLLTDHQXYQT
Run BLAST on NCBI

transcript from alignment at scaffold_97:254020..255510

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073757 ID=TCONS_00073757|Name=TCONS_00073757|organism=Clytia hemisphaerica|type=transcript|length=1491bp|location=Sequence derived from alignment at scaffold_97:254020..255510 (Clytia hemisphaerica)
CCTGAACCGGCATCACAAGGTCCGTCAGCCACCACACCCAGAAGAAGAGG AACAACACAATATGGATATGACAAACATCTAGCACAGAAGAAGGAGACGT CCTTTTCATCAGACTTCGAGTTAACGCGAATCACACTGGTTTCCACTCAA GTAGAatttagactagtaaaccacgtcgctGCAGAATAAACTTTCAATGG gatctattttttttatatgttcactgaatacaacaatgtctttccaatcc actctcccgcggcaatttctattttttataagaactctttattataagcg cTATTCCCGCGTtgctgtgtccaaggaaagacagacgcttgctagtctag tAGAATTGGACTTTTAATCTCCGCTGTTCCTCCAGGCCTCGCAAGCTTGG AAGGCAGTAATGGCAAAAGTAAGAAACAGACATATTATCAGGACAGTCAA AATATTATCTCAAAACGTTCGGGGTATGAAAAATGATACTCGTATCGAAA TTTTGTTAAATGTAATGAAGGAAAGAAACGCTATTGCAATGTGTGTCCAA GAAACATGGCGAAGTGGAAACGAATTGTTGGAGCACGGCTTCTTTAAAAT TGTCTCGTCCGGTCTTGACGAAAGTACACAGCGCGGTAAAAGAGGTTCCC AAGGAGTTTCAATCGTCTTAAACGCAGATGGTGACGCTGCGTGGAAAGCA GGAGGTTACGAAAAGCACACGAACTTTGGTGCAAGAGTAGTAGCGATTCG ACTTCTTTTAACTGACCATCAAAANTATCAAACTTAAGCTTATGAAACGG TTAAAAAAGAAATCTGAACCACGCCAAAAAATGATCAACCTCGACCTCTC TGTGCTTTCAAATGTGACTAAACAGAATGATTTTTGTGGAAATGTAGCAC AAAAACTGAACTTTTCTACTTCTCCTGGATACGAAATGTTCTCAAGCACA ATTAAAAAGGTATGCGAAGAAACGCtcccaaagaaaaacaaaagtcaACC CGGCTGGTTCGAAGCTAATTCTTCAAAGCTCCTTTCGTTGATTCACTCCC GAAATCAAGCTATGAAGGACGTTTTAAAACGATCGACGTGATCTTCTACT AATCGTCTCCGTCTAGctagaaaaaatctaaaagcCATGATAATTAAATC AAAGAACGATTGGATACTTAACCATTGTGTCACTGTGAACCGTTATCAAG GTACAAAGAAAGCTTGGGAATCCCTCAAGATCCTCAAATGTGGGCTTTCA AAACCTAAACCTTCAGTATCAAGACATATGAAAAAGCCAGACGGTACCTT ATGTGCAACACCACAAGAAAATGCATCAGTCTTTTACGAACACTTTAATC ATCTCTACAATAGGGAGGCAAATTTCGACCAATCTGTCCTTGACACAATT CCCCACCATGATATTGTCCATGGATGTGACCATGAACCTACCGATGATGA AATAAAGAAATCCGTTCAGAAGCTAAACAACACTTCACCTG

Coding sequence (CDS) from alignment at scaffold_97:254020..255510

>TCONS_00073757 ID=TCONS_00073757|Name=TCONS_00073757|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_97:254020..255510 (Clytia hemisphaerica)
ATGGCAAAAGTAAGAAACAGACATATTATCAGGACAGTCAAAATATTATC
TCAAAACGTTCGGGGTATGAAAAATGATACTCGTATCGAAATTTTGTTAA
ATGTAATGAAGGAAAGAAACGCTATTGCAATGTGTGTCCAAGAAACATGG
CGAAGTGGAAACGAATTGTTGGAGCACGGCTTCTTTAAAATTGTCTCGTC
CGGTCTTGACGAAAGTACACAGCGCGGTAAAAGAGGTTCCCAAGGAGTTT
CAATCGTCTTAAACGCAGATGGTGACGCTGCGTGGAAAGCAGGAGGTTAC
GAAAAGCACACGAACTTTGGTGCAAGAGTAGTAGCGATTCGACTTCTTTT
AACTGACCATCAAAANTATCAAACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045803XLOC_045803Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073757-proteinTCONS_00073757-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073757-exon-scaffold_97-1491911889:254020..255510TCONS_00073757-exon-scaffold_97-1491911889:254020..255510Clytia hemisphaericaexon
TCONS_00073757-exon-scaffold_97-1510915933:254020..255510TCONS_00073757-exon-scaffold_97-1510915933:254020..255510Clytia hemisphaericaexon
TCONS_00073757-exon-scaffold_97-1575043694:254020..255510TCONS_00073757-exon-scaffold_97-1575043694:254020..255510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:254020..255510 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.25476 0.10797 0.349239 0.613298 0.559954 0.826096 0.855762 1.03373 0.799734 0.891803 0.610074 0.982066 0.910443 0.740982 0.330119 0.753356 0.57055 0.483291 0.355472 0.302789 0.540856 0.441553 0.730232 0.921227 1.19684 1.01372 0.207589 0.249233 0.0922493 0.16184
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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