TCONS_00073754 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073754
Unique NameTCONS_00073754
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length914

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073754 ID=TCONS_00073754|Name=TCONS_00073754|organism=Clytia hemisphaerica|type=transcript|length=914bp
agggggggtagtgacccccttccgaactatgtaaaacaataatatttttt
ttaaactttaaattttatatgTGGCGAATATGGGCTCACGCCTAATGCTA
CTTAattaaatagatagatagatagtaAACTCCTCCATTTTTCTGCTGTT
GAAAGGAGGACCATtgtcagatatttgattttcaggatATCCATATTCAT
CATAGATCTCCGTTAGTGCAGGGATAACTTTATCAGCTTTAGTTGAGGCT
ACGAGCTTTGCTGCTGGGTATCTTGATCCCAGATCTTGAACAACAACAAT
ATGCTTGGATGATGGCATGGGACCAAAGAGGTCTACGGCCACTGTGTCCC
AAGAGTTTTCAGGTACCCTGTGACTGGTTATAGGTTCCTTTGTCTTTTTA
TCAACAAACAATGCGCAATCACTGCAAGAACTGACAAAACTTTTCACCTT
ATCGTACATTCCATGGAAGAAAAAATGGAACCTAAGTCTCCTTTCAATTC
CACTTTTTCCTGGGGTGAGATCCCCTGTGTGCTAGTTCAATAGCTAGTTT
GTGTAGTGATTCTGGAAGAACAATTCTATCATCCTTGAGTATTATTCCGT
TCGCCATAGCGGTTAGTTCCGACATAACAGGTCCAAATCTTTTAACCTCT
TTGGAGACATTCTTAGGGATTGATTGATAGCCCTTCCAGAGATATTTTTG
AATGTGACTGAGTGTTTTATCATCAGCGGTTTCCTGAGCGATTCTCGCTA
GTGAAATGTGATCAACGACTTGTGTCATATGAAGTGCGTATAGAAGATTA
TTGAGGTCATTGCATTCTTCTCTCTGGCCAATTGGAAGACTGGAAAGTTT
TCTCCCATGACGACTCATGTAGTCTACTTGATTAAGAGACCCTTTCTGGT
ATTCAACAATGAAC
Run BLAST on NCBI

protein sequence of TCONS_00073754-protein

>TCONS_00073754-protein ID=TCONS_00073754-protein|Name=TCONS_00073754-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
FIVEYQKGSLNQVDYMSRHGRKLSSLPIGQREECNDLNNLLYALHMTQVV
DHISLARIAQETADDKTLSHIQKYLWKGYQSIPKNVSKEVKRFGPVMSEL
TAMANGIILKDDRIVLPESLHKLAIELAHRGSHPRKKWN
Run BLAST on NCBI

transcript from alignment at scaffold_97:241415..242328

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073754 ID=TCONS_00073754|Name=TCONS_00073754|organism=Clytia hemisphaerica|type=transcript|length=914bp|location=Sequence derived from alignment at scaffold_97:241415..242328 (Clytia hemisphaerica)
GTTCATTGTTGAATACCAGAAAGGGTCTCTTAATCAAGTAGACTACATGA
GTCGTCATGGGAGAAAACTTTCCAGTCTTCCAATTGGCCAGAGAGAAGAA
TGCAATGACCTCAATAATCTTCTATACGCACTTCATATGACACAAGTCGT
TGATCACATTTCACTAGCGAGAATCGCTCAGGAAACCGCTGATGATAAAA
CACTCAGTCACATTCAAAAATATCTCTGGAAGGGCTATCAATCAATCCCT
AAGAATGTCTCCAAAGAGGTTAAAAGATTTGGACCTGTTATGTCGGAACT
AACCGCTATGGCGAACGGAATAATACTCAAGGATGATAGAATTGTTCTTC
CAGAATCACTACACAAACTAGCTATTGAACTAGCACACAGGGGATCTCAC
CCCAGGAAAAAGTGGAATTGAAAGGAGACTTAGGTTCCATTTTTTCTTCC
ATGGAATGTACGATAAGGTGAAAAGTTTTGTCAGTTCTTGCAGTGATTGC
GCATTGTTTGTTGATAAAAAGACAAAGGAACCTATAACCAGTCACAGGGT
ACCTGAAAACTCTTGGGACACAGTGGCCGTAGACCTCTTTGGTCCCATGC
CATCATCCAAGCATATTGTTGTTGTTCAAGATCTGGGATCAAGATACCCA
GCAGCAAAGCTCGTAGCCTCAACTAAAGCTGATAAAGTTATCCCTGCACT
AACGGAGATCTATGATGAATATGGATatcctgaaaatcaaatatctgaca
ATGGTCCTCCTTTCAACAGCAGAAAAATGGAGGAGTTtactatctatcta
tctatttaatTAAGTAGCATTAGGCGTGAGCCCATATTCGCCAcatataa
aatttaaagtttaaaaaaaatattattgttttacatagttcggaaggggg
tcactaccccccct

Coding sequence (CDS) from alignment at scaffold_97:241415..242328

>TCONS_00073754 ID=TCONS_00073754|Name=TCONS_00073754|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_97:241415..242328 (Clytia hemisphaerica)
TTCATTGTTGAATACCAGAAAGGGTCTCTTAATCAAGTAGACTACATGAG
TCGTCATGGGAGAAAACTTTCCAGTCTTCCAATTGGCCAGAGAGAAGAAT
GCAATGACCTCAATAATCTTCTATACGCACTTCATATGACACAAGTCGTT
GATCACATTTCACTAGCGAGAATCGCTCAGGAAACCGCTGATGATAAAAC
ACTCAGTCACATTCAAAAATATCTCTGGAAGGGCTATCAATCAATCCCTA
AGAATGTCTCCAAAGAGGTTAAAAGATTTGGACCTGTTATGTCGGAACTA
ACCGCTATGGCGAACGGAATAATACTCAAGGATGATAGAATTGTTCTTCC
AGAATCACTACACAAACTAGCTATTGAACTAGCACACAGGGGATCTCACC
CCAGGAAAAAGTGGAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045800XLOC_045800Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073754-proteinTCONS_00073754-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073754-exon-scaffold_97-1491911889:241415..242328TCONS_00073754-exon-scaffold_97-1491911889:241415..242328Clytia hemisphaericaexon
TCONS_00073754-exon-scaffold_97-1510915933:241415..242328TCONS_00073754-exon-scaffold_97-1510915933:241415..242328Clytia hemisphaericaexon
TCONS_00073754-exon-scaffold_97-1575043694:241415..242328TCONS_00073754-exon-scaffold_97-1575043694:241415..242328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:241415..242328 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.522811	0.513513	0.734259	0.841253	1.08269	0.553432	0.73525	0.658836	0.303819	0.526767	0.204099	0.667777	0.365451	0.241648	0.0858952	0.194478	0.192113	0.234256	0	0.388218	0	0.350093	0.3402	0.145522	0.439015	0.625979	0.146346	0.349594	0.249256	0.746515
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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