TCONS_00073753 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073753
Unique NameTCONS_00073753
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073753 ID=TCONS_00073753|Name=TCONS_00073753|organism=Clytia hemisphaerica|type=transcript|length=351bp
gtttttagctgggatctgggagtctgggctgaaggtgggaattttaggat
aaggtgggacctgaattttcaggtgggacctggaacccccttgaaCACTA
TGATTATACACTTGAGATTCCTCATCAGTTGAAGTCGATTCTTCTACCTC
ATTGATTTCCATTTCCTTCCTTGCTGGTCTACTTTTACATACTTTTGCAT
AGTGGCCAGTTTTGTTGCATTTGCTACAAACAGATGCTCTTGCTGGGCAT
TGTTTAGCATGTACGACGATATCTTGTTTCTTGCCTGTTATTCCACAGAA
AAAGCAGGATGTTGATTGGTCTTTATTTGGCACTTTTGTCCCATTTCTTC
G
Run BLAST on NCBI

protein sequence of TCONS_00073753-protein

>TCONS_00073753-protein ID=TCONS_00073753-protein|Name=TCONS_00073753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
RRNGTKVPNKDQSTSCFFCGITGKKQDIVVHAKQCPARASVCSKCNKTGH
YAKVCKSRPARKEMEINEVEESTSTDEESQVYNHSVQGGSRSHLKIQVPP
YPKIPTFSPDSQIPAKN
Run BLAST on NCBI

transcript from alignment at scaffold_97:239342..239692

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073753 ID=TCONS_00073753|Name=TCONS_00073753|organism=Clytia hemisphaerica|type=transcript|length=351bp|location=Sequence derived from alignment at scaffold_97:239342..239692 (Clytia hemisphaerica)
CGAAGAAATGGGACAAAAGTGCCAAATAAAGACCAATCAACATCCTGCTT
TTTCTGTGGAATAACAGGCAAGAAACAAGATATCGTCGTACATGCTAAAC
AATGCCCAGCAAGAGCATCTGTTTGTAGCAAATGCAACAAAACTGGCCAC
TATGCAAAAGTATGTAAAAGTAGACCAGCAAGGAAGGAAATGGAAATCAA
TGAGGTAGAAGAATCGACTTCAACTGATGAGGAATCTCAAGTGTATAATC
ATAGTGttcaagggggttccaggtcccacctgaaaattcaggtcccacct
tatcctaaaattcccaccttcagcccagactcccagatcccagctaaaaa
c

Coding sequence (CDS) from alignment at scaffold_97:239342..239692

>TCONS_00073753 ID=TCONS_00073753|Name=TCONS_00073753|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_97:239342..239692 (Clytia hemisphaerica)
CGAAGAAATGGGACAAAAGTGCCAAATAAAGACCAATCAACATCCTGCTT
TTTCTGTGGAATAACAGGCAAGAAACAAGATATCGTCGTACATGCTAAAC
AATGCCCAGCAAGAGCATCTGTTTGTAGCAAATGCAACAAAACTGGCCAC
TATGCAAAAGTATGTAAAAGTAGACCAGCAAGGAAGGAAATGGAAATCAA
TGAGGTAGAAGAATCGACTTCAACTGATGAGGAATCTCAAGTGTATAATC
ATAGTGttcaagggggttccaggtcccacctgaaaattcaggtcccacct
tatcctaaaattcccaccttcagcccagactcccagatcccagctaaaaa
c
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045799XLOC_045799Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073753-exon-scaffold_97-1491911889:239342..239692TCONS_00073753-exon-scaffold_97-1491911889:239342..239692Clytia hemisphaericaexon
TCONS_00073753-exon-scaffold_97-1510915933:239342..239692TCONS_00073753-exon-scaffold_97-1510915933:239342..239692Clytia hemisphaericaexon
TCONS_00073753-exon-scaffold_97-1575043694:239342..239692TCONS_00073753-exon-scaffold_97-1575043694:239342..239692Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073753-proteinTCONS_00073753-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:239342..239692 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.4747	4.8814	11.604	11.8963	28.7334	25.0365	31.3691	35.9356	6.14441	8.8645	8.90171	2.85404	3.16019	8.05647	0.759613	0	0	0	1.54257	0.374113	2.58627	0	3.50522	3.05938	25.0721	31.1783	0.769211	0.571183	8.47244	8.30609
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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