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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073749 ID=TCONS_00073749|Name=TCONS_00073749|organism=Clytia hemisphaerica|type=transcript|length=1217bp
Cgagtatgtccgagccaaagtttgtaaatcgacccttagagagactgaat
ttcgacaACTttgcgaccctttgagagactatttTTCCAACTTTGTccgt
tttttgacgtttttgccaccCATAGAGAAactatttccccaaaatttcag
ccaaatttcaagaatttatgactcTTTGAGAGGgagtcgattttttattt
tcataattttggaaACCTTACAGAGACTCGATTGCTATCTATTTAATGgc
ttttgtacccctttgagggactttttAGAGTgtggcacgcacatacccgt
catcgATTTTACCTAAGTGACCTCCCCCCCCCTGGGTCAGATAACTGGGG
GTTTTCAATGTATTGTTATTGACCAGTTATAAAATCAGGGGAAAAGTTGA
AATTCAATTATtgtcttgaaaatttttcactttcctTGATAATTTGTTTT
CTAATTAATAGTATCAGTATCGGTTAATATTTTGTATTTCATGGATTTGT
AAATAGgttgaaagaaattttattatttttatgatttatcGATTCGAATT
GTTAATAGGCATTTTATATctcaaaattgattctaaaattTTCCAGNTTG
CTATGCTGTTCAAACCATTACGTAATGTTGCTAATGTTGTCACTATGGTT
ACTACACCAGTCATGTCTTGTTTGCGTCTCATGGCGTCCGCTTTAAGCCC
GCTCGCTCAGCCGGCTCTTATGTTTTGGAATACTGTGAGAcaagtttttg
ttaaatttgcaGACTCCTTATCTTTTATATGGGGTATTGTTGCACGCTGG
TCTATAGTACGTATTGTCGCTGATAAATTCCAGGGATTGGGTCTGCAGAA
TTTACTGAATGAACTTTCGAATACTAATTTGGATCCATTGAAAGCACAAA
TGTTGGTGATACAGAATTTATTGTTAAGAAGTTCCAAACAGATTTATTAT
GGTATACGTTTCTTCATGTTGAAGATTTCATACATGTTTGTATTCGTGAA
ACGTGAACGTGATTACGCACGTGAAGAAACGGCCACGGAAATAAAGAAAC
GTGAGGGTAAAGAAAAAGAGGAATAAACAATCTCATACACGCTTCTCGAG
Atgcattaccgagtttatgtatttgcgcttttgaggacggtaaagtggct
gaagcgatttggaataacccgcagttctgccCCGCaatatcgaggacggt
aaaagtgctgatttacc Run BLAST on NCBI protein sequence of TCONS_00073749-protein >TCONS_00073749-protein ID=TCONS_00073749-protein|Name=TCONS_00073749-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MIYRFELLIGILYLKIDSKIFQXAMLFKPLRNVANVVTMVTTPVMSCLRL
MASALSPLAQPALMFWNTVRQVFVKFADSLSFIWGIVARWSIVRIVADKF
QGLGLQNLLNELSNTNLDPLKAQMLVIQNLLLRSSKQIYYGIRFFMLKIS
YMFVFVKRERDYAREETATEIKKREGKEKEE Run BLAST on NCBI transcript from alignment at scaffold_97:211353..212569 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073749 ID=TCONS_00073749|Name=TCONS_00073749|organism=Clytia hemisphaerica|type=transcript|length=1217bp|location=Sequence derived from alignment at scaffold_97:211353..212569 (Clytia hemisphaerica)
ggtaaatcagcacttttaccgtcctcgatattGCGGggcagaactgcggg
ttattccaaatcgcttcagccactttaccgtcctcaaaagcgcaaataca
taaactcggtaatgcaTCTCGAGAAGCGTGTATGAGATTGTTTATTCCTC
TTTTTCTTTACCCTCACGTTTCTTTATTTCCGTGGCCGTTTCTTCACGTG
CGTAATCACGTTCACGTTTCACGAATACAAACATGTATGAAATCTTCAAC
ATGAAGAAACGTATACCATAATAAATCTGTTTGGAACTTCTTAACAATAA
ATTCTGTATCACCAACATTTGTGCTTTCAATGGATCCAAATTAGTATTCG
AAAGTTCATTCAGTAAATTCTGCAGACCCAATCCCTGGAATTTATCAGCG
ACAATACGTACTATAGACCAGCGTGCAACAATACCCCATATAAAAGATAA
GGAGTCtgcaaatttaacaaaaacttgTCTCACAGTATTCCAAAACATAA
GAGCCGGCTGAGCGAGCGGGCTTAAAGCGGACGCCATGAGACGCAAACAA
GACATGACTGGTGTAGTAACCATAGTGACAACATTAGCAACATTACGTAA
TGGTTTGAACAGCATAGCAANCTGGAAaattttagaatcaattttgagAT
ATAAAATGCCTATTAACAATTCGAATCgataaatcataaaaataataaaa
tttctttcaacCTATTTACAAATCCATGAAATACAAAATATTAACCGATA
CTGATACTATTAATTAGAAAACAAATTATCAaggaaagtgaaaaattttc
aagacaATAATTGAATTTCAACTTTTCCCCTGATTTTATAACTGGTCAAT
AACAATACATTGAAAACCCCCAGTTATCTGACCCAGGGGGGGGGAGGTCA
CTTAGGTAAAATcgatgacgggtatgtgcgtgccacACTCTaaaaagtcc
ctcaaaggggtacaaaagcCATTAAATAGATAGCAATCGAGTCTCTGTAA
GGTttccaaaattatgaaaataaaaaatcgactcCCTCTCAAAgagtcat
aaattcttgaaatttggctgaaattttggggaaatagtTTCTCTATGggt
ggcaaaaacgtcaaaaaacggACAAAGTTGGAAaaatagtctctcaaagg
gtcgcaaAGTtgtcgaaattcagtctctctaagggtcgatttacaaactt
tggctcggacatactcG Coding sequence (CDS) from alignment at scaffold_97:211353..212569 >TCONS_00073749 ID=TCONS_00073749|Name=TCONS_00073749|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_97:211353..212569 (Clytia hemisphaerica)
TTATTCCTCTTTTTCTTTACCCTCACGTTTCTTTATTTCCGTGGCCGTTT
CTTCACGTGCGTAATCACGTTCACGTTTCACGAATACAAACATGTATGAA
ATCTTCAACATGAAGAAACGTATACCATAATAAATCTGTTTGGAACTTCT
TAACAATAAATTCTGTATCACCAACATTTGTGCTTTCAATGGATCCAAAT
TAGTATTCGAAAGTTCATTCAGTAAATTCTGCAGACCCAATCCCTGGAAT
TTATCAGCGACAATACGTACTATAGACCAGCGTGCAACAATACCCCATAT
AAAAGATAAGGAGTCtgcaaatttaacaaaaacttgTCTCACAGTATTCC
AAAACATAAGAGCCGGCTGAGCGAGCGGGCTTAAAGCGGACGCCATGAGA
CGCAAACAAGACATGACTGGTGTAGTAACCATAGTGACAACATTAGCAAC
ATTACGTAATGGTTTGAACAGCATAGCAANCTGGAAaattttagaatcaa
ttttgagATATAAAATGCCTATTAACAATTCGAATCgataaatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073749-exon-scaffold_97-1491911889:211353..212569 | TCONS_00073749-exon-scaffold_97-1491911889:211353..212569 | Clytia hemisphaerica | exon |
| TCONS_00073749-exon-scaffold_97-1510915933:211353..212569 | TCONS_00073749-exon-scaffold_97-1510915933:211353..212569 | Clytia hemisphaerica | exon |
| TCONS_00073749-exon-scaffold_97-1575043694:211353..212569 | TCONS_00073749-exon-scaffold_97-1575043694:211353..212569 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:211353..212569 . |
Blast
The following BLAST results are available for this feature:
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