TCONS_00073731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073731
Unique NameTCONS_00073731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073731 ID=TCONS_00073731|Name=TCONS_00073731|organism=Clytia hemisphaerica|type=transcript|length=1601bp
gataaaaaactaaacaaaaataagAGAGTAATAACCAAAAAGAAACTACA
AGCGACATTATGACAGTACGAGCGATAGCAAAAATTGCTTTATCCTTACT
GCTGTTAAAAATGGTGATTGGAAATACTAGCGCAGTCAAATACACAGCGC
TGATGGTTCATGCAGAACCATATTCGTGGTTGAATGGAACACAAATGATT
GGCTTGATACCTGATTTGTTGAATGTATTTTCTGTGAAATGCGAAAATTT
GACTTTCGAAGTTCATCAAGTACATTGGTCATTAAAACAGCTTAAAGAAA
TCACCATGAATGAGGATCCGTTACCAGAGATTAAAAGTAATGTTCACGGA
ATCAACATCGATCGAAATGTCATCCTTGGCATGAATAATTAtccaaatta
tttcaaaaaagaacACAAATTCTTAGCTTATCCATTCATCTTTTCACGAG
GTATAGTGGCAGTAGTACACCGTGACACCATCGGTTTAGGGCGGAAATTA
TATGAAGCAATGGTAGATTCTGCTATTATCATGTATAATGGATTACTGCT
GGCTGTCATCAGTGGAGTGATTATTTGGGCTGTGGAGCGCCGTCATAATT
GCCTTATGTTTCCCAACGAAACCGGTCCCGGCATTTTGAATGGTATTTGG
CTTACTATTGTTACCATGGCAACAGTAGGTTACGGAGACATGGCACCGCG
CACGAAACTTGGTAAAGGTTTAATGATGTGTTATATGGGCGTGGCAACTT
TATTGATCGCTGCGTTGACTGGTGTTTATACAGAGCGCGTCGCCAACGCT
GAAGTCCATATCAATGCTGATACTAAGATGAGCGTCGTGAATGGAACATA
TGACGTTGAGATTGCGATGAGATTTCACAAGAATCGTGGAACGTACATAC
ATGGAGACAGTATCAAAACTGTACGCACCTACGTTGAAGCACTCAAACTG
GTGCAAACCAAACAAGTAGAAATGGCATTAATCGATTACAATGTAGCCGC
CTGGCTACAAGAGGACATTATAGCCAGCGATTTGCGGATCACAAAATTCA
TCGAGCAAAAGTTCCACAAACATATCTACATCTACGAAGACCACACCGAG
CATGAGAAAATACACGAACTTTTAAAATGCTTTCGATACAATCAAAACTC
TTTCGATCACGCCCTAACGGATTTCGTCCGCCCCATAAACATAGTACGCC
TTGATGTTACGGATATGTATTACGCTTTGTTTAATATTGGTATAACACCG
ATTATGAGTAGCATAGCTTTGTTGACGTTTTCGATTGTATTGTTGTACGA
GCTTTATGTGACAATCAAGAAAAGATGCCAGCCTAAAGGTGCCAGTAACA
AAGGTAAGCAAAGTTTACACAGCGActgtagcatgaaggtagagcacaag
gctacggttcgcaaggttgtgtgttcaacccccagccgggtcataccaaa
gattcctaaaatggtacttgatgcctctctgcttgatgctccgCAATTAa
gagagaaggatcaagggtaagtggagcaatccagggagaaagagtggcgc
cctcccctaccttcgggtagatagctatcgaaagaggagccttcgagtca
c
Run BLAST on NCBI

transcript from alignment at scaffold_97:858391..864976-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073731 ID=TCONS_00073731|Name=TCONS_00073731|organism=Clytia hemisphaerica|type=transcript|length=6586bp|location=Sequence derived from alignment at scaffold_97:858391..864976- (Clytia hemisphaerica)
GATAAAAAACTAAACAAAAATAAGAGAGTAATAACCAAAAAGAAACTACA
AGCGACATTATGACAGTACGAGCGATAGCAAAAATTGCTTTATCCTTACT
GCTGTTAAAAATGGTGATTGGAAATACTAGCGCAGTCAAATACACAGCGC
TGATGGTTCATGCAGAACCATATTCGTGGTTGAATGGAACACAAATGATT
GGCTTGATACCTGGTAAAGAATCTATTGTTTCTATCGGAAATATTCGAGA
GAAAAAACACAGAAAATTGCCTCCTTCCTGCTGAGTCTCCCATACATCTG
ATTCTAGAGACCGCTAGAGAGTATTATAAAGTCTGCCCGATGGTGATATA
CTAGTAGGGCCCTCACACTTTAATGAAGCATTAGACAGACAGGTTTGGTA
TGACCATAGATTTATAACGCCCGAAGGGCTAGATGTCGTACTTTAAGCCA
TCGCAGGCAAAAAAAAGTGAATATCGCAAGAAATACTTGGAAATATAGTT
GCTATTGTTTTCGAAAACCCACAAAGCTTCTTATTGGTCAAGCGCTGGAA
TTCTATTGTAATTTCACGTGACCTAGATAGGATTTTTAACCACGGCACAC
TTTTCAGTCAAAGCTCGACATCTAGCCCTTCAGGCTTTATGAATCTATGG
GTATGACCTGGGCAGGATTCCACCTATGCTCTCGCGCACCGTATCGCGCC
AATCGCATTACCTTTGTACTACAGTTACTTTGGTGATCATTTGTATGGCT
CCGCACACAAAAAAATTATTTCAAAACTTAATAACTTAATTAAGCTTTTA
AACTTTTCTTTTAAACTGGGTTTTCTGAGGTACTCGCTAAGTTAAAAGGT
TAAAGGGCACCATGGGGGGACCATTATCCGTTAGCACTTGTCTGGTGGAA
TTCACATTCTGATTAGCATGTTTCAATTTATTAATCAAATGACTCGGTCA
TTTTTCTTCTAGATTTGTTGAATGTATTTTCTGTGAAATGCGAAAATTTG
ACTTTCGAAGTTCATCAAGTACATTGGTCATTAAAACAGCTTAAAGAAAT
CACCATGAATGAGGTATGGTTGAAAGCTGTAGAATCGAGTCTTCTATATA
GTACCGTAAATTTTCTAATTTAATGTGTACTCTAATTTAACGCGGACCCT
GTTTTTAGCGAAACATCGTAATTAATCTTACCCTAATTTCTAACGCAGAT
TTAAGACAATAGAGCAAGTACGTCGGAAACATGCATAGGAATGCAACGCT
CGAAAAAAAAAACAATGCAATTCCAATTATAAATCTCTTCATCTGATAAG
TTCGACATGGTCTAAAACCACCAATGAACGTGTAGCCGGAATTTTACCTA
ATTAATTTTATTCTAATTATTACGCGTGGTGTGAGAAAAAGTGAAAACTT
AGAGGGTTACCAAAGAAAGAATAAAGGAAATCGAAGCAAGAACTTTAAAG
AAACAGAAAAAAAACACTCAGAAAAGTAGAGTTCGAAAGGATATGGTACA
CTATGTAATAATATATAGGCACCTTCAAACGACGGGAAACTTTTTTTCTA
TTTTGTCTATTTGGTTAAGTCGCTCGAGGCTCTCTAGTCCCATTTTTGTA
ATTGTAGATGCTTAATATGAGCCCATCCTAACATGACATGGGCAAAGCTT
TGTTCACTTGCCAAGTGAATTTTCGTGCAATTTAATTTCGCGGTTCACAG
CTTAAAATATGGAATTTTTGCGGAATTTGATTTCGTGATGGAGAGAATTT
TTAAATTCCCAATTGGAACAGTGGTAAAAGAGTTTTTCGTTTCAGGCGGT
TTTGAAATTTGCCTTAGTACACCTTATCGATAGAAAATTCGTGGGCAAAA
AATTATCGGTGAAAAAAAGTTCGCCAATTCGTTTACGTATCTAGAAAATT
CGTCGGCAAAAAGTGACGAAATTTGTTATATCCGAGAAATTCAAACGAAA
AGTCTTGTTACGCCTTGCGACGAAATTCTTTACCGGCAGACTTGAAAACA
TTCGAAAGCTTATCACCCTAGCTATAGCTTGGCACGAAGTCGTAAAACAA
CGACCTTATGGTTACTTATATGGTTCTTTTACAGGATCCGTTACCAGAGA
TTAAAAGTAATGTTCACGGAATCAACATCGATCGAAATGTCATCCTTGGC
ATGAATAATTATCCAAATTATTTCAAAAAAGAACACAAATTCTTAGGTGA
GTAGAGCGTAATTTGCAATTTGCATAACACTGTATAATAACTTCGAGGGA
GTAAACGCCCCGGGCGTTTTTTGTTTTATTTTAGTTCTTAGGAGGGGCGT
TTATTCGAGGAGACGTTTATTCAAAGTAATACTGAGGTTAAGCATAACAG
GATAATCACAACGACGGACGAAAAATGTAATAGGCTAGTGAAAATACGAA
ATTTTATTGGTTGAAACTCACTAGGCTGTTAAATTTTCGTTCGTCGTCGT
GATTTTACCGATTTACTTAACTTCACTAATATATGGTATCCTAGACTGAG
ACTAGACTATGATGTCTTTCAAATTTTAGACAAATGGGCCGACTTGCGCC
AATAAATTGATCACTAGACTGACTAGGTGCCATAAAAACATGACAATAAA
GTTTAGTCAGGAGTAGCCTCTAGCCTACAAAATAATGGAAAAAGTCTATC
TACCGTGAAAGGTTTTACGAATTAGGACTGATAAAATAAATTTCTTTATT
GACGGACAGGACACTAACCATCATCTTTTTTCTTATTTTTTTATACAGCT
TATCCATTCATCTTTTCACGAGGTATAGTGGCAGTAGTACACCGTGACAC
CATCGGTTTAGGGCGGAAATTATATGAAGCAATGGTAGATTCTGCTATTA
TCATGTATAATGGATTACTGCTGGCTGTCATCAGTGGAGTGATTATTTGG
GCTGTGGTAAGTGAAAGCTCTGACTGGAAGGTGTTACATGGGTAGTGTCA
AATTTAACATTATCTTTTCATAATACGAAAGCACCCGAGGGAAAATGCCA
GAAATTTTGTTAAAGGTTTTATTTTTACAAAAGTGTTCCCGTTTCATAAG
ACACATCAGGATGGTGTCTGCCTATCGTTACATCATGCTGATTATAAGCA
AAACAATTGCCGCGCAGGCATTTTTTTGTCCGCTTATCCCACTAAAACCG
TCCCAGTCCTTTTTTGACAAATTTTCCTATTGTCTATAGGTGCGAAAAAA
GGACTGGGACGGTTTTAGTGGAATGAAAATGTCCGCGCGACAATTGGCGG
CTACGGTCAAAAAGGTCTATTAAAGTTGATAAGTAGGCAAACGATATCAC
TCTTATTAAAAAACAAAACCTTTACATGATAAAGCGAGTAAGAGTTCAAT
TTTCACCATCAATAGTGCAGTACTCATAAGTACAATACCTTCCTAATTTG
GCCCATTACCCAGCATTATAGTTCGAGGGAAAGGAAATGAAGTGGACCGA
GAATTAGAATATTCTGCTAACTATGCACGAAGCTTGAGATGAATTTCCTT
TATATTTCTAGGAGCGCCGTCATAATTGCCTTATGTTTCCCAACGAAACC
GGTCCCGGCATTTTGAATGGTATTTGGCTTACTATTGTTACCATGGCAAC
AGTAGGGTAAGTAGTAGAATATCATTGGGCTATTCCAGAAAAATTTGTAC
CCCCCCCCCTATGTTGAGGAGGCCTTTTTGGGGAAGGATGACCTCCTAGA
TTGTTTAAAAAATTTTCAGGACCCCCTTGGATTTTTTATTTCCTCATATT
TTGGACCACCCTTACCTGGATTTTCGACCTCCTTTTTCTGACCACCCTAG
TTTTTACACTCGAAAAACCAGACCACCTAGATTTTTTTTTACCTTAAGGG
AACTAATATTGGTGGGAACTAATTTTGGCGGATTTGGCGAATTTAGCCAA
CTCACTCGCCAAAATAGGTTCCCGCCAAAATTAATTCTTTTGTTTTTTTG
CCTAAATGAACCCTGAAATTCATCAAAGCTGCTCAAAATAAGGCAAAATA
GAACAAATTTACGATGTCATTCGCAAAAATTAGTTCCCACTAAAATTAAA
AAATTTCGCCATTCGCCAAAATAAGTTCCCGCAAAAATTAATTTCTTTTA
GGATTTTTTGCTGCCCGCCAAAATTAGTTCCCGCCAAAATAAGTTCCCTT
AAGGTATTTTTCAGACCACCGTGGGCGTCAAACCTCCTCAACATAGGGGA
CAAACTATTTCTGAATTAGCCCATTTTGTTAAACGTTTAACATTACCGAG
TTTCTGTATGTGTGTTTTTCTGCGACGGAGGAGGTAAGATTCTAATTTGA
CTAGATCATGACCAACTGAGGACGACGGTAGATCAGCACTTTTACCGTTT
TCGGATCAAAACCTGCGGGTTATTCCAAAACGCTTCAGTCACTCTACTGT
CATCAAAAGTGCAAATACATAAACTCGCTATTATCATCTACCCTTTGACC
AACATTCTTTATTATTATTACACAGTTACGGAGACATGGCACCGCGCACG
AAACTTGGTAAAGGTTTAATGATGTGTTATATGGGCGTGGCAACTTTATT
GATCGCTGCGTTGACTGGTGTTTATACAGAGCGCGTCGCCAACGCTGAAG
TCCATATCAATGCTGATACTAAGGTAAAGAGAAGACCACAGTAGCCTAAT
TTAACATTTTATTTTGATACAATTTCCCCTCTCGGATAGCTCCTGTTTGT
CGCACACCCTGCCGAAACAAAAAGCAGAATTCTACCTTTTCCCTGTACTT
TCTTTACGTAATAATGCAGCGACTTCAAAAATAGGCCCCTAGGCTTTTGC
CGTCAATTTACGTTTGCTAGGCCTTAAATTTAGAACGCCATGGTTTTACC
CAAATAGGTCCATAAACTCCAATCGGATAAGTTTTCGCGAGTCTAAAAAT
CGTAAAATCTTCTGGATCTAATTTTGCGAATCAGCAAACGACTGGCTTTT
GAAACGCCAAAAAGTAGCAAATTCGCTGTGTATTTTACATCTAAAATCTG
ATTTCACGCTTAAACTCTGCTTGATGGATTTAATTTCGCAAGTCAGAGAT
TTCACACCATTTCCCGAGATATATTAACGCAAAAATGGCAAAAATTTGGA
AAAAATTCACATTTTTTACTTTCGATTCAGATGAGCGTCGTGAATGGAAC
ATATGACGTTGAGATTGCGATGAGATTTCACAAGAATCGTGGAACGTACA
TACATGGAGACAGTATCAAAAGTAAATATACATCACTTTTTTATTACAAC
AATTTATGTATTCTATTATAAAAAAGGATTTTCTTTCTGTAAACAATCCA
CCTATTTCCACCCATGGTCTTGGTCTTGCGGACCGAAATGTAAGAAGTAA
ACAAACAGGTGCTCTATACCTTTCCTTGAAATCCCCTTACCTGGAATATT
GGAAATGGAGCTAAATATCATAGTTTCATGCATTTTTGCCTAAGAATTGA
CATTTTTGGATAAAAAAATTCTCTGAAAAAGGCATGTTTTTACACTGTTA
TGCTAAAAAAGCATAAAATATGCTATATTTTACTGCTTTGAAGCCTGAAA
ATCAGGTGGACGAAAAGATTTCAAGGAAAGGTATAGAGCACCGTTGTTTC
AACGTTTATCTAACGTTAAAAACGTCCATATAACGTCAGAGGAACTTGAA
ACAGCTGGGAAGCCATACAGTTACGGAATCAAGCATATTAAGAATAGGTT
ACGACATTCGTAAGTACGAAAATCCTAAGAGGAACGGCTGAAGCTTAGTC
GAAATTTACTGGTTCTTTAAAACTCCTTAAAAAGTTTAGGGTATTACGTC
GACACAGAAATTCTTCATATCCAACATTGAAAGCAAAAAAAATCTACGGA
AAATCCTTTAAAAATCTAATTTCACGTGACCATTAATGTTTTTCTTGTTT
AAGCTGTACGCACCTACGTTGAAGCACTCAAACTGGTGCAAACCAAACAA
GTAGAAATGGCATTAATCGATTACAATGTAGCCGCCTGGCTACAAGAGGA
CATTATAGCCAGCGATTTGCGGATCACAAAATTCATCGAGCAAAAGTTCC
ACAAACATATCTACATCTACGAAGACCACACCGAGCATGAGAAAATACAC
GAACTTTTAAAATGCTTTCGATACAATCAAAACTCTTTCGATCACGCCCT
AACGGATTTCGTCCGCCCCATAAACATAGTACGCCTTGATGTTACGGATA
TGTATTACGCTTTGTTTAATATTGGTATAACACCGATTATGAGTAGCATA
GCTTTGTTGACGTTTTCGATTGTATTGTTGTACGAGCTTTATGTGACAAT
CAAGAAAAGATGCCAGCCTAAAGGTGCCAGTAACAAAGGTAAGCAAAGTT
TACACAGCGACTGTAGCATGAAGGTAGAGCACAAGGCTACGGTTCGCAAG
GTTGTGTGTTCAACCCCCAGCCGGGTCATACCAAAGATTCCTAAAATGGT
ACTTGATGCCTCTCTGCTTGATGCTCCGCAATTAAGAGAGAAGGATCAAG
GGTAAGTGGAGCAATCCAGGGAGAAAGAGTGGCGCCCTCCCCTACCTTCG
GGTAGATAGCTATCGAAAGAGGAGCCTTCGAGTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045781XLOC_045781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073731-exon-scaffold_97-1575043694:864764..864976TCONS_00073731-exon-scaffold_97-1575043694:864764..864976Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1575043694:863914..864014TCONS_00073731-exon-scaffold_97-1575043694:863914..864014Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1575043694:862781..862892TCONS_00073731-exon-scaffold_97-1575043694:862781..862892Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1575043694:862071..862228TCONS_00073731-exon-scaffold_97-1575043694:862071..862228Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1575043694:861371..861465TCONS_00073731-exon-scaffold_97-1575043694:861371..861465Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1575043694:860354..860501TCONS_00073731-exon-scaffold_97-1575043694:860354..860501Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1575043694:859756..859846TCONS_00073731-exon-scaffold_97-1575043694:859756..859846Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1575043694:858391..859073TCONS_00073731-exon-scaffold_97-1575043694:858391..859073Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1510915933:864764..864976TCONS_00073731-exon-scaffold_97-1510915933:864764..864976Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1510915933:863914..864014TCONS_00073731-exon-scaffold_97-1510915933:863914..864014Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1510915933:862781..862892TCONS_00073731-exon-scaffold_97-1510915933:862781..862892Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1510915933:862071..862228TCONS_00073731-exon-scaffold_97-1510915933:862071..862228Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1510915933:861371..861465TCONS_00073731-exon-scaffold_97-1510915933:861371..861465Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1510915933:860354..860501TCONS_00073731-exon-scaffold_97-1510915933:860354..860501Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1510915933:859756..859846TCONS_00073731-exon-scaffold_97-1510915933:859756..859846Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1510915933:858391..859073TCONS_00073731-exon-scaffold_97-1510915933:858391..859073Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1491911889:864764..864976TCONS_00073731-exon-scaffold_97-1491911889:864764..864976Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1491911889:863914..864014TCONS_00073731-exon-scaffold_97-1491911889:863914..864014Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1491911889:862781..862892TCONS_00073731-exon-scaffold_97-1491911889:862781..862892Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1491911889:862071..862228TCONS_00073731-exon-scaffold_97-1491911889:862071..862228Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1491911889:861371..861465TCONS_00073731-exon-scaffold_97-1491911889:861371..861465Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1491911889:860354..860501TCONS_00073731-exon-scaffold_97-1491911889:860354..860501Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1491911889:859756..859846TCONS_00073731-exon-scaffold_97-1491911889:859756..859846Clytia hemisphaericaexon
TCONS_00073731-exon-scaffold_97-1491911889:858391..859073TCONS_00073731-exon-scaffold_97-1491911889:858391..859073Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:858391..864976 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.198686	0.299527	0.451609	0.286267	0.155878	0	0.102469	0.0891229	0	0.317479	0.0460572	0.295032	0.669655	0.343373	0.102974	0.135166	0.886416	0.621591	1.31163	2.38438	1.4535	2.28165	0	0.104748	0.494142	0.389244	0.178366	0.342632	0.0306671	0.030914
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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