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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073726 ID=TCONS_00073726|Name=TCONS_00073726|organism=Clytia hemisphaerica|type=transcript|length=1606bpRun BLAST on NCBI protein sequence of TCONS_00073726-protein >TCONS_00073726-protein ID=TCONS_00073726-protein|Name=TCONS_00073726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp YTRIREGSTEIGKIQKITDMEEAITITSMNITDLRFPTSLELHGSDAMHSRun BLAST on NCBI transcript from alignment at scaffold_97:728890..758399- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073726 ID=TCONS_00073726|Name=TCONS_00073726|organism=Clytia hemisphaerica|type=transcript|length=29510bp|location=Sequence derived from alignment at scaffold_97:728890..758399- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_97:728890..758399- >TCONS_00073726 ID=TCONS_00073726|Name=TCONS_00073726|organism=Clytia hemisphaerica|type=CDS|length=17940bp|location=Sequence derived from alignment at scaffold_97:728890..758399- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073726 vs. Swiss-Prot (Human)
Match: ENOF1 (Mitochondrial enolase superfamily member 1 OS=Homo sapiens GN=ENOSF1 PE=1 SV=1) HSP 1 Score: 561.992 bits (1447), Expect = 0.000e+0 Identity = 260/433 (60.05%), Postives = 345/433 (79.68%), Query Frame = 3
Query: 78 ITSMNITDLRFPTSLELHGSDAMHSAPDYSAAYLELKTTRE-SLTGCGFAFTLGRGTDIVVKTIELFEPLVIGRDVKKIFASFSQYWKELVTEDQIRWLGPEKGVTHLAIAAIINALWDIWAKLEKKPLWKLLADMEPEQLVNTIDFTYLTDVLTKEEAIEMLXXXXXXXXXXXXYLFENGYPAYTTSIGWKGYSDEKIQRLCKQALKEGWTRFKMKVGSDVEDDKRRSRIIREEIGYQHKLMMDANQVWDVEQAIQHMKELSPYKPLWIEEPTSPDDILGHAKIRAALEPYGIRVATGEACQNRVIFKQLMQAKSIDFCQIDTCRVGGVNENLSIILMAAKFGIPVCPHAGGVGLCELAQHLSIFDYIAVSGTLENRMTEYVDHLHEHFEDPVVIQNGCYKVPTRPGYSSKIKENTLQEYQYPNGPVWKQLM 1373
I+ +++ D+RFPTSL HG+DAMH+ PDYSAAY+ ++T E + GCG FTLG+GT++VV + V+ +D+K I F ++++L ++ Q+RW+GPEKGV HLA AA++NA+WD+WAK E KP+WKLL DM+P LV+ IDF Y+TDVLT+E+A+E+L++ + GK+EREK + GYPAYTTS W GYSD+ +++LC QALK+GWTRFK+KVG+D++DD RR +IIR+ IG + LMMDANQ WDV +A++ M +L+ +KPLWIEEPTSPDDILGHA I AL P GI +ATGE C NRVIFKQL+QAK++ F QID+CR+G VNENLS++LMA KF IPVCPHAGGVGLCEL QHL IFDYI+VS +LENR+ EYVDHLHEHF+ PV+IQ Y P PGYS+++KE +++++QYP+G VWK+L+
Sbjct: 6 ISRLSVRDVRFPTSLGGHGADAMHTDPDYSAAYVVIETDAEDGIKGCGITFTLGKGTEVVVCAVNALAHHVLNKDLKDIVGDFRGFYRQLTSDGQLRWIGPEKGVVHLATAAVLNAVWDLWAKQEGKPVWKLLVDMDPRMLVSCIDFRYITDVLTEEDALEILQKGQIGKKEREKQMLAQGYPAYTTSCAWLGYSDDTLKQLCAQALKDGWTRFKVKVGADLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAVEWMSKLAKFKPLWIEEPTSPDDILGHATISKALVPLGIGIATGEQCHNRVIFKQLLQAKALQFLQIDSCRLGSVNENLSVLLMAKKFEIPVCPHAGGVGLCELVQHLIIFDYISVSASLENRVCEYVDHLHEHFKYPVMIQRASYMPPKDPGYSTEMKEESVKKHQYPDGEVWKKLL 438 The following BLAST results are available for this feature:
BLAST of TCONS_00073726 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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