TCONS_00073725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073725
Unique NameTCONS_00073725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073725 ID=TCONS_00073725|Name=TCONS_00073725|organism=Clytia hemisphaerica|type=transcript|length=932bp
aagaGAGAAATACATCAAAAATGGATTCTGCTCATTGCGCTACCGATCCT
TTACGTTTGAAaccaaatcaaaatggcgaccaaattcaaaaattgaaagc
tgaaatgacaaaaatgaaagaagatTATGAACGCAAAATTCAAGTCTTGA
ATTATGAGAATCAAATTAAAGTGTTGGAGTTTGAGAAAACTTTGAGTGAA
AAAGACAATATTATTCAAATAATGAAGCACCAACGGGAAATCGAGAAGCT
CAAAATGGAGCAGAAGGAATTCGAGGTTAAATTGAAAATGACGTATAATT
GCGACGAAAGTGATGgcaaatcaaaatttaagacTTTGGAGAGAGAAGTC
GAACGACTTCAAAGTGAGGTTGCAAGTTTTCAAGAATTTGACAACAAGAT
TACCTTAAACGATGCCAAACTTGCCATGATTGATGcaaaaattgttgaaa
tcaaCAACCGCTCCGTTGAAAAAGATAACAAAATCATTCAATTGAAAACC
GAAATTGATGAGAAACTTGCTGCAATGAAAACAGATATAATACAAAAAGT
CGAGGCAAAACTAGAGAAGGATGACCTAGTTGCTATTCAAAGAAAGATGA
TAGAAGTTGAAGAAAAGATGCAGAATACAGATGGTGACATTGTGAAAAGA
TTGATTGAGTTAGAAAAGAAATCGCAAAAATCACTTTTGGAGATGGaaac
gaaagtgaaagagaTGAGAACTTCTATTGATGAATTGCCAGAAATGGAGA
GTCTCGTTTGGGGTGCAGGAAAGTTTATGGAAGGGTTGGTAGTCAAGATA
TTGAACCCAGCTCCATCTTATGAGCAATGGTATGAACACATTTCGTCGTT
TATGACAAATGGAAAATTGTACTACAACAAtgcaaaatactttttttgtc
GGAAAGAGATGGGCAACCAATTTGACCAAATA
Run BLAST on NCBI

transcript from alignment at scaffold_97:649791..650722-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073725 ID=TCONS_00073725|Name=TCONS_00073725|organism=Clytia hemisphaerica|type=transcript|length=932bp|location=Sequence derived from alignment at scaffold_97:649791..650722- (Clytia hemisphaerica)
AAGAGAGAAATACATCAAAAATGGATTCTGCTCATTGCGCTACCGATCCT TTACGTTTGAAACCAAATCAAAATGGCGACCAAATTCAAAAATTGAAAGC TGAAATGACAAAAATGAAAGAAGATTATGAACGCAAAATTCAAGTCTTGA ATTATGAGAATCAAATTAAAGTGTTGGAGTTTGAGAAAACTTTGAGTGAA AAAGACAATATTATTCAAATAATGAAGCACCAACGGGAAATCGAGAAGCT CAAAATGGAGCAGAAGGAATTCGAGGTTAAATTGAAAATGACGTATAATT GCGACGAAAGTGATGGCAAATCAAAATTTAAGACTTTGGAGAGAGAAGTC GAACGACTTCAAAGTGAGGTTGCAAGTTTTCAAGAATTTGACAACAAGAT TACCTTAAACGATGCCAAACTTGCCATGATTGATGCAAAAATTGTTGAAA TCAACAACCGCTCCGTTGAAAAAGATAACAAAATCATTCAATTGAAAACC GAAATTGATGAGAAACTTGCTGCAATGAAAACAGATATAATACAAAAAGT CGAGGCAAAACTAGAGAAGGATGACCTAGTTGCTATTCAAAGAAAGATGA TAGAAGTTGAAGAAAAGATGCAGAATACAGATGGTGACATTGTGAAAAGA TTGATTGAGTTAGAAAAGAAATCGCAAAAATCACTTTTGGAGATGGAAAC GAAAGTGAAAGAGATGAGAACTTCTATTGATGAATTGCCAGAAATGGAGA GTCTCGTTTGGGGTGCAGGAAAGTTTATGGAAGGGTTGGTAGTCAAGATA TTGAACCCAGCTCCATCTTATGAGCAATGGTATGAACACATTTCGTCGTT TATGACAAATGGAAAATTGTACTACAACAATGCAAAATACTTTTTTTGTC GGAAAGAGATGGGCAACCAATTTGACCAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045777XLOC_045777Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073725-exon-scaffold_97-1575043694:649791..650722TCONS_00073725-exon-scaffold_97-1575043694:649791..650722Clytia hemisphaericaexon
TCONS_00073725-exon-scaffold_97-1510915933:649791..650722TCONS_00073725-exon-scaffold_97-1510915933:649791..650722Clytia hemisphaericaexon
TCONS_00073725-exon-scaffold_97-1491911889:649791..650722TCONS_00073725-exon-scaffold_97-1491911889:649791..650722Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:649791..650722 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09577e-07 0.4049 0 0.122158 0.132348 0.0522915 3.14406 1.61297 1.55641 0.498729 0 1.01556 2.69594 1.08849 3.51604 4.611 0.986237 1.42966 4.1189 4.49255 0.763231 2.01691 2.38895 2.20926 0.14211 0.763982 0.378124 0.606721 1.83102 0.734585
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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