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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073724 ID=TCONS_00073724|Name=TCONS_00073724|organism=Clytia hemisphaerica|type=transcript|length=1088bp
aagaGAGAAATACATCAAAAATGGATTCTGCTCATTGCGCTACCGATCCT
TTACGTTTGAAaccaaatcaaaatggcgaccaaattcaaaaattgaaagc
tgaaatgacaaaaatgaaagaagatTATGAACGCAAAATTCAAGTCTTGA
ATTATGAGAATCAAATTAAAGTGTTGGAGTTTGAGAAAACTTTGAGTGAA
AAAGACAATATTATTCAAATAATGAAGCACCAACGGGAAATCGAGAAGCT
CAAAATGGAGCAGAAGGAATTCGAGGTTAAATTGAAAATGACGTATAATT
GCGACGAAAGTGATGgcaaatcaaaatttaagacTTTGGAGAGAGAAGTC
GAACGACTTCAAAGTGAGGTTGCAAGTTTTCAAGAATTTGACAACAAGAT
TACCTTAAACGATGCCAAACTTGCCATGATTGATGcaaaaattgttgaaa
tcaaCAACCGCTCCGTTGAAAAAGATAACAAAATCATTCAATTGAAAACC
GAAATTGATGAGAAACTTGCTGCAATGAAAACAGATATAATACAAAAAGT
CGAGGCAAAACTAGAGAAGGATGACCTAGTTGCTATTCAAAGAAAGATGA
TAGAAGTTGAAGAAAAGATGCAGAATACAGATGGTGACATTGTGAAGAGA
TTGACTGAGTTGGAAGAACAATCACAAAAATCACGTTGGGAATTGGAAGC
AAAAGTGATAGAGATAATGGGAACTTCTATTGATGTATTACCAGAAATAG
AGAGCCTCGTTTGGGGTGCAGGAAAGTTTATGGAAGGGTTGGTAGTCAAG
AAATTGAACCCATCCCCAACCTATAAGCAATGGTATGAACACATTTTGTC
GTTTATGACGAATGGAAAATTGTACTATGACAATGCTAAATACTTTTTTT
GTCGGAAAGAGATGGACGTACGATTTGACAGGATATACTTTGTATCAGAG
AGGGAGAAATGTGGATGGGCAAAATGGACCATTGCTGTTGATGAATTTCA
TGGTGATCTTTGGAATAAAGGGAAAGTATGGTTACTTCATCCAACCGATC
AATCTAAAAAATTGGAGATTCCGAAATTCGAAAGGAAT Run BLAST on NCBI transcript from alignment at scaffold_97:641211..650722- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073724 ID=TCONS_00073724|Name=TCONS_00073724|organism=Clytia hemisphaerica|type=transcript|length=9512bp|location=Sequence derived from alignment at scaffold_97:641211..650722- (Clytia hemisphaerica)
AAGAGAGAAATACATCAAAAATGGATTCTGCTCATTGCGCTACCGATCCT
TTACGTTTGAAACCAAATCAAAATGGCGACCAAATTCAAAAATTGAAAGC
TGAAATGACAAAAATGAAAGAAGATTATGAACGCAAAATTCAAGTCTTGA
ATTATGAGAATCAAATTAAAGTGTTGGAGTTTGAGAAAACTTTGAGTGAA
AAAGACAATATTATTCAAATAATGAAGCACCAACGGGAAATCGAGAAGCT
CAAAATGGAGCAGAAGGAATTCGAGGTTAAATTGAAAATGACGTATAATT
GCGACGAAAGTGATGGCAAATCAAAATTTAAGACTTTGGAGAGAGAAGTC
GAACGACTTCAAAGTGAGGTTGCAAGTTTTCAAGAATTTGACAACAAGAT
TACCTTAAACGATGCCAAACTTGCCATGATTGATGCAAAAATTGTTGAAA
TCAACAACCGCTCCGTTGAAAAAGATAACAAAATCATTCAATTGAAAACC
GAAATTGATGAGAAACTTGCTGCAATGAAAACAGATATAATACAAAAAGT
CGAGGCAAAACTAGAGAAGGATGACCTAGTTGCTATTCAAAGAAAGATGA
TAGAAGTTGAAGAAAAGATGCAGAATACAGATGGTGACATTGTGAAAAGA
TTGATTGAGTTAGAAAAGAAATCGCAAAAATCACTTTTGGAGATGGAAAC
GAAAGTGAAAGAGATGAGAACTTCTATTGATGAATTGCCAGAAATGGAGA
GTCTCGTTTGGGGTGCAGGAAAGTTTATGGAAGGGTTGGTAGTCAAGATA
TTGAACCCAGCTCCATCTTATGAGCAATGGTATGAACACATTTCGTCGTT
TATGACAAATGGAAAATTGTACTACAACAATGCAAAATACTTTTTTTGTC
GGAAAGAGATGGGCAACCAATTTGACCAAATAATGTTTGCACTAGAGAGG
ATAAAACCGACAGGAGGATGGGGAGGACATGCTATTGTTGTTGATGAATT
TCATGGTGATCTTCCGAATAAAGGGAAAGTATGGTTACTTCATCCAACCG
ATCAATATAAAAAATTGGAGCTTCTAAAATGCTACAATAGTACAAATTAT
GACAGGTGGTATAATGGAAATGTAGATGACCATTTTTATTATGGCAATAA
AAATTCTGTCATCATTTTCGGTATGATAAAAAAATGATTTGTTATAACTA
TAAGCTACGAATTTCAACTATAAAGTTTCATTATGAAAGGAAATGCAGAT
TCACATGTAAAACCTTGTAAAACTGAAACTTTGAAATGCTTTCCATGTCT
CATGGAATCTTGTTTAAACTTCCCTACTTACATTGCAGTTTCTCAATTTA
GGTTGCCAACCCATTTTAAATACATCCAGCATTATGTATTAACCGTTCAT
TCTATATTTTTTTGAGATTAATATTTTGTAGAAATAGGGTTTAATTATTT
TTATAATGATCAATTCAGCTTATAATTAGGTCATGTTTTCAAGCATTTTT
CACGCACAAGATGTAAACTCTAAATTCTGAAATAACTTTCTAAAAGGTAG
CTAATTTTGTCTTAATATTTTGTATAAATATAGGGTTTAATTATTTTTAT
AATGATCAATTCAGCTTGCTTATATTCAGGTCAGATTTTCAAGCATTTTT
CACGCACAAGATGTAAACGTTATATTATGAAATAAATTTCTAAAAATTAG
CTAACTCTGTCCTTATATTTTGTACATATGGGTTTACTTTTTTTATGATG
ATCAATTCAGCTTATAATCAGGTTAGATTTTCAAGCATTTTTCACGCAAG
ATGTAAACGTTTAATTCTTTATATTGTATACAACTAGTAGCTTCTTATAT
GAAATAAATTTCTAAAACGTAGCTAACTCTGTCTTAATATTTTGTATAAA
TAGGGTTCAATTATTTTTATAATGATCAATTCAGCTTATAATCAGGTTAA
GTTTTCAAGCATTTTTCACGCACAATATGTAAACGTTAAATTCTTTATAT
TGTATACAACTAGTAGCTTCTTATATGAAATAAATTTCTAAAACGTAGCT
AACTCTGTTTTAATATTTTTTATAAATACACGTTTTTTTTTTATAAGAAC
AAACTATATAAGAACATAAGGCTTCGAAGCCCAAAAGTTTAAGAACATTC
TAAGAACATTCTAAGGCTTTGGAGACTTAAAAACATTTTCTTAAGAAATT
ACATTGAAATGCTCAAAAAGTGCTGAAAATAAGAACATTTTAAGAACATT
TTTAGGCTTCAAATCCAAAAAACTAAGAACATTCGAAGGCTTCCAAAATT
TTTGACGTTCTTGTAGGGTTTAATTATTTTTATAATGATCTATTCAGCTT
ATAATTAGGTCAAGTTCTCAAGCATTTTTCACACCCAAGACGTAAAAGTT
AAATTTTTTATATTGAAAACAACTAGTAGCTTCTTATATGAAATAAATTT
CTAAAAGTAAGCTAACTCTGTCTTTATATTTTGTACATATGGGTTTACTT
TTTTTATGATGATCAATTCAGTATATAATCAGGTCATGTTTTCAAGCATT
TTTCACGCACAAGATGTTAACGTTAAATTCNNAAAGATTGAAACATAAAA
AATAATCAGGAATAATTAATTGATTTGATTATTGATTGATTGATTGATTC
TCTATTGCTACTTTGCCTAATAAACAATAGTCAAGAGTATACTGCGGATA
AAATTTATCAAAAAGTTCTGCGCCATCTTAAATAGGGCGAAATAGAAATC
AATCAAACGCTGTGATTGCACTTCTCAAGCAAAATCTTTTATGTTGTTGG
TCAAACATTCTACTTTTTGTACTTTGCCGGTATCTTGTTTTACCAAGTTA
AGAAGGACTTTCTCGAGTTACGACCATATAATGGTCTTTAAAGCTCAAGA
AGCTCTATAAACAATAAAGTAAAGGTAGTTATTAATAAAATAACAAACAA
AGATAAATTACAGTTTGAACAAAAATATCAACAAAATGTACATTTGAAAA
CTTGAGCAAATTTCTTCAACCCTATTCAAACTAGGCTTTTAGGGGGGGTT
CAGAACTAGGGGGGGGGGGGCTTTTCCTGTACCACCCCTTAACTTTTGAT
CTAGTGGGTCTTTTTGGATGAAATTTGGCTCACAAGATCCTTGTCACGTA
AGGTAACTTTTGACAAAAAATTTTTTTGATGACGTCACTCATCATGCCCA
AAGTAAGCAAAAACCGAACTTTTCAATGTTCTTATAATTAGCTATTGTAT
TTTAACAAAGGCTTTAGAAAAAAGTTGCCTGAGTTTAAAATGCTTATTTT
ATCCTAAATATTCAATAAATTACGGCTTAAACGATATATTTGACATTAAA
AATAAATTTGTATTGGAAAAGTGTCTATTTTTGTGACACCTTACTGTCAG
AAATGTCATCATGCTCAAGGTGTGAAAATATTTAGGTGTCAAATTTTTAT
TTATTTTGAACCTAAATAAAAGTTAGGAATTTACAGAAAATTTCACGGCA
AAAGCTCTATTATTTCAGGAGCTATTACCAATAGTTTGACTTCCGAACAG
AAAGAGCCCCCCCCCCTAGTCCGAATAGGGTTAAAGATTCCGGAAAAAGA
ATTGAAGTCATTGCTGAAATGAACTTCTGACTAAATTACAGTATTTATTT
ATACAAAATTAGACATACAAAACACTTTTTCCAGTCAAAGACGAAAGAAT
CAGCTCATCATCATAACCAGTCTGCCATTTTGTTTGTTTTGATTTGCAAA
AGTAATATGGTAATTCGTGTTATGGTGTAATTATATACTTTTTCTATAAT
TTGCATTTATAACACTCGCTGTATAATTTACCGCCATATTTTTGCGGAAC
ACTTAATCGCTTTTTCTTTTTATACCTTTCTTTTATCCAAATTTTTGTAG
GAACTAATTTTCGCTTTTTTCGCAGTTATCCAGCGAAACCAGTAAAATTT
AAACCCTAGAATTACAAATTTGGCCATTTTCCATCAAAGTTGAAAAATCC
CTAGAAAAAATAATCAAATGTTTTTTGCTTCTGGAGTAAATTTATCTAGA
GTTTCTAAAGATTTTAATATTTTCGTTTTTTTATCGTGGATCGAAAATCC
TTACTTTGATCACAAAACTCAACTTTCAGATAATTTGGGTGGTTATCGTC
ACGACGGGATTTGTGAACAATTTTTGATGTTACATTACAACCAGCTGCTA
TATTTTGAATTTTTTGTAGCCGATCAAGTTGGTATTTCGGAATCTGTACA
AAGACAACATTACTATAATTCAGTTTTGTCAGTATTAATGTTTCAGCGAG
AGTTTTACGTACCCTAAAGGGTGTGGAATGACTGAATTTTTGAAGAGAGC
GTAGAGTACCTTGAGATGATTTAATGAAACCGTTTATGTGTATCGACCAA
GTAAGGTTTTCGTTGAGTTGAACTCCAAGTAGTTTGACATTAACTTTGTG
TTCGATGAATTTCCCAGAGCATCGAAAAAGATGATAAAGTAAGATAATGT
TTATCACTGTTAAAAATAAGATTACTATTCTTCGACCAGGATGGAAGATT
CTCGACATCTTTCTCCATTTCCTTGATTGTTTACAATAAGTCTTTAACTT
TGTAGTGTTGTGTCGTCGGCATACTGAATACTACTGGATATTATTTGGTC
GAAAGTTCAACGGCGTAGAGATTGAATAACACTGGGCCTAGTATACATAG
ATTTAATCGATAAAGTTTTATCCTGAACTTGGACTTTAAATAGCTTGATA
ATAACTGGAGAGAATCGATGGAAAAATTCATATTTCGTAACTTCAGCAGC
AAATTCTTGCGGCCAATGGTATCGAAGGCTTTCGAAGAATCTATTAGGAT
GGATAAAGGAACTTCACTTTTCACCATTGTTTTTTAGACATCATTCCGCA
GTTTAATCAGTAAGGTTGTGGTGGAGTGTCCTTTACGAAATCCAGACTGC
GTGTTTGGTGGTAGAGCGCTTTGTCTTCGATGAATTCGCAAAGTTGGACT
AAGATAACTCTCTCCAATACTTTGGAAAATACAGGAAGTACGGATATGGG
ACGGTAATCTTTAATCTTGATAGGTGAATCGATCTTTGGAATTTGACATA
CTCGAGCTACCTTCCATTGACGAGGAAAGACTTACTAGTCAATACACAGT
TATTAATAACGTGAACAATTGGCGAGGTGATGAACTCTGATATTGGTTTA
ACAAATCTAATAGATATTTTATCAGAGCCACAAGAACAGTCATTCTTTAT
ATTCTTTAGAATCTGATTCCCTTGATCATACGTTGTGTGTTGAATTTTGA
GCGAAGTTTGGTCATTTAATGCCTCGAGGTTGGTAGGTCTACTTACCAGT
GAGATCTGAATGAATGGTGGTTGATCCTCAACTTTTGGTTGTTCAGTACA
GCGATGGATGGTTGTTTAGTACTCGATGGATGTTCCACACATATTTAGGA
TCTTTCAAAGATAAAGATTTCTTGAGAAAATTATTTTTGATTTGTTCCAG
TTTCATTTTATAACTCAGTACTCTCGGGTACCTAATAGCCTCCCCCCCCG
CTAATTAATTCTTCGAAAATTTTCCATCCAGGACATTCTTTTTCCAACCC
CCCGCTTATTAATTTTTGGGAAAATTTTTTTGAAAGTTCCCTCTTTTGTC
CTAATTCTGCTGTATTAGCCTCCTTTTCAAAAGTTTTCCACCCAGGACAT
TTCTATTCCAACCCCCCCCCCGCTTATTAAGTTTTGAGATTTTTTCCAAA
CCCCCGGCTATTAGGTACCTGAGAGTAAGCCTCTATTTGTATGAAGTTTT
GCGTTGTGGATCTATTCGAGCATGCTGATGAAAAAGCTCAAGATTAGTTC
TGCGATTGCTAGATCCCGCATCAATGATGCAATTGGACCATTTTATGTGT
TTGAGCGGAGCATGAGTTTCGATGCAGCTGAGGATCAGATTATTAAGGAT
ATCAATTTGGTCTTCAGGGTCATCAAAAGCATGAATGGTGCTGAATTGTA
AATTAGATATTTCATTGAGTTCATGTCAAGATTCCTGACGTCACGAATGA
ATTTGTATCAAGGTTCAAAGCGTCCTTTCTTCATATTCAGTAGAATGTAG
GGGGTGTCATGATCGCTTAACATCTGTAGAACTTACGTCCGTAAAGTTGA
ATTTACTTGTTATGTTGGTGATTGGTGATTACATGATCCGTGTCTGGTTG
GTTTCGTAACATGTTGGAATAGGTTGTTCGATGATAGAAGTTCTTTGTAG
CGTTTGGTTGACTCCTTTTATTGACCAAAGAGATCAAAGTTCATATCCTC
TGTCAGAATAATAATTCCACTCCACTTGGTACAAATTTCAACGATCGCGG
TATCGAATTGACCTAGCCAATGTAACTTATCCTTTTCTTTGAAGTTTGGT
TGGTATACGGTAACGAGAAAATGCGATGTATTTTTATTTAGGCCACGGAA
TTCAGCAACGAGAATTTGTGACATTGAGTTTTTGGTTAAATCCTTACGAG
GTTGGAAATGAAGGTTATAATTGGCGTAAATACCGACACCACATCCTCGG
CTTCCTCGGTGTTTGAAGATAGGATTGTATTCCAGCTGTTGTAGCCATGT
TTCATTAACGGTAATGATGTCGAATTGGTAAAGAGTCAACATGGTGGAAT
ATTCGGTAATTGTAAAGAGAAGCAACTGGGCTTGTGTGTGTGATCGAAGT
CAAATTACGTTTCTTGTTCAATAAATTTAAATGAGTGTTTTCGATTATCA
GTTCGTCATTTGAGAAGCTTTCATCAATATTCAAATCTCTCAAACCAAAG
AAAGTGCAAATGTCCATTCTACTATGATGCAAGATGCCATATGTTTTTGT
ACGTATTTGGAGATGGTTGAGCATGATGCATGGGGAAGGCAGTGACATTT
GATACATTGAAGGCGCTTCCTGTTGGTCCCAACTCCTTTCACACATTTAG
TGAATTTTGGTGCCGGCCCGGGATTGATTTCAATATCACCAGATAGTACA
ATATTAAAAGTTTATCTAGCACCCAGATTATGAAATTTTCATCCGACACG
CTAAAGCTCTGAAGGTCGGGAAAATTTTCAACATCAATGGAAGGTTTAGA
TTATACGGAATTTTGCGAGACCGCGTCAATAATTTTGCAGCGGGAGGTCT
GGTAACCCAGCGCTCGTTTTCGGGGATTGGCGGGTCCAACCGTAATATTT
TTAGGTTTACGGGAAAGGGCTGTTGAACCCGACTGGGGATGCGGCACATT
AAAGGCCGACTGCCATTCCTCTCCGATGGGAAATTGACCCGCTCCCTTTA
GAGCTTTAGCGTGGGGCGACCGCCAATCCGCCATCGGAACATCAGATAGC
ACCTGAGTTTGTGCAATAACTAACAGGCGATTTCATTCTCTTGATTTTCA
ATGAGTTGTGTTTACAAAAGGTTTCATTCTTTGTAATAGCGACGTAATCA
ATTATTGAATTGTGAACGAATGCATTAAGAGCATTATTAAGAGATTAAGG
TCATTAAAATTGCAAAGCGATTCATCTCGAAAAAGTAAAAAGTTCGAATA
CTTTTTCCAATTCAATAGAAAAAATAATTCCCAGCTTTCGAGTGTAAGAT
ATATAAACAAATTATATGTTAAGTTTCCATAAGTTATCCCGTCTTCGTAA
GAGATTGAAATTTATTTGAACAAACATGTACTATTAGTACAAGTGCTATT
AGTCCCTCAATACTTGCTCAAGTTTACCAATCCTTGCAATATTTCTTCTG
GGTCTGGACAGATGTACATAACAGCATAACAGTAATCCAGTAGAGAAACA
AACACTCGAAAATTTCAATGTCGAATCCAGTTCTTAACATGTTTTTATTT
TTTACCATTTTGTGTCTATCTTCCTAAGAAATCAGATGTTTTAGATGTTT
GCGAAGCCTCAAAATGTTCTTAACTTGTTCTTAAGATTTTTTGTCCACAA
AAGCAATATGTTCTTATATAGTTTGTTCTTATAAAAAAACCTGTATAATA
AGTGGAATAAGCATGTGCTTCTTTAAATATTCTTATAAAAAGTATGAATC
TAATTAATGAGCTTTTTATATGCAAATAATAAAAACCACAGACAGATATC
ACATTCTTTTCAATGCAAAAAAAAAAGATTATTTAAAAAACGAACACAGA
CAGTACTTTATTGCAAGAAAANGTTCTCATATAGTTTATTGGGAGTTTAT
TCTTATAAAAAAACGTGTATGATAAGTGGAATAATCATGTCATTCTTTAA
ATATTCTTATAAAAAATATGAAATCAAATTAATGCAAATAATACAAACCA
CAGAGAGATATCATATTCTTTTCAATGCAAAAAAAAAAAGATTATTTAAA
AAACAAACAACACAGACAGTATACTTTATTGCAAGAAAGAGCATGACAAC
TTTTAAGATGATAATATTTTCTTGAAGAGAGAAAGACATCAAAAATGGAT
TCTGCTCATTGTGCTACCGATCCTTTACGTTTGAAACCAAATCAAAATGT
CGACCAAATTCAAAAATTGAAAGCTGAAATGTCAAAAATGAAAGAAGATT
ATGAACGCAAAATTCAAGTCTTGAATTATGAGCATCAAATTAAAGTGTTG
GAGTTTGAGAAAAATTTGAGTGAAAAAGACAATATTATTCAAACAATGAA
GCACCAACGCGAAATCGAGAAACTCAAAATGGAGCAGAAAGAATTCGAGG
TTAAATCGAAAATGACTGACAATGGCGACGAAAATGAGGGCAAATCAAAA
CTTAAGACTTTGGAGAGAGAAGTTGAACGACTTCAAAATGAGAACTTACG
TTTTCAAGAATTTGACAACAAGATTACCTTAAATGACGCCAAACTTGCCA
TGATTGATGCAAAAATTGTTGAAATCAACAACCAATCCGTTGAAAAAGAT
AACAAAATCATTCAATTGAAAACCGAAGTCGATGACAAACTTGCTGCAAT
GAAAACAGGCATAATTCAAAAAGTGGAAGCGAAACTAAAGAACGATGATC
TAGTTGCTATTCAAAGAAAGATGATAGAAGTTGAAGAAAAGATGCAGGAG
ACAGATGATGACATTGTGAAGAGATTGACTGAGTTGGAAGAACAATCACA
AAAATCACGTTGGGAATTGGAAGCAAAAGTGATAGAGATAATGGGAACTT
CTATTGATGTATTACCAGAAATAGAGAGCCTCGTTTGGGGTGCAGGAAAG
TTTATGGAAGGGTTGGTAGTCAAGAAATTGAACCCATCCCCAACCTATAA
GCAATGGTATGAACACATTTTGTCGTTTATGACGAATGGAAAATTGTACT
ATGACAATGCTAAATACTTTTTTTGTCGGAAAGAGATGGACGTACGATTT
GACAGGATATACTTTGTATCAGAGAGGGAGAAATGTGGATGGGCAAAATG
GACCATTGCTGTTGATGAATTTCATGGTGATCTTTGGAATAAAGGGAAAG
TATGGTTACTTCATCCAACCGATCAATCTAAAAAATTGGAGATTCCGAAA
TTCGAAAGGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073724-exon-scaffold_97-1575043694:650085..650722 | TCONS_00073724-exon-scaffold_97-1575043694:650085..650722 | Clytia hemisphaerica | exon |
| TCONS_00073724-exon-scaffold_97-1575043694:641211..641660 | TCONS_00073724-exon-scaffold_97-1575043694:641211..641660 | Clytia hemisphaerica | exon |
| TCONS_00073724-exon-scaffold_97-1510915933:650085..650722 | TCONS_00073724-exon-scaffold_97-1510915933:650085..650722 | Clytia hemisphaerica | exon |
| TCONS_00073724-exon-scaffold_97-1510915933:641211..641660 | TCONS_00073724-exon-scaffold_97-1510915933:641211..641660 | Clytia hemisphaerica | exon |
| TCONS_00073724-exon-scaffold_97-1491911889:650085..650722 | TCONS_00073724-exon-scaffold_97-1491911889:650085..650722 | Clytia hemisphaerica | exon |
| TCONS_00073724-exon-scaffold_97-1491911889:641211..641660 | TCONS_00073724-exon-scaffold_97-1491911889:641211..641660 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:641211..650722 - |
Blast
The following BLAST results are available for this feature:
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