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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073714 ID=TCONS_00073714|Name=TCONS_00073714|organism=Clytia hemisphaerica|type=transcript|length=1368bp
AAATTACTTTGATAACCATTCTCTATAAGTAATTTAACATGATTAAAGAT
TGAAGAAGCAATTGTCTGGTATTGAGGTGAAAACAAtgctaaagtaaaaa
tcaaaccaaagatATCAACGACGATTCGATCAATCATGGCATTTTTTCAT
CAACCATTGTTGAATACTTGCCTGCAGGTCAAGCAAGACGATAGGATCAT
CCAGGCAAGAAACAATAAAACCCAAAAGGAAGAAANTGCAGATCAAGCAA
GACGATAGGATCATCCAGGCAAGAAACAATAAGACCCAAAAGGAAGAAGC
ACAACCAAGTCACTTAAAAACGGTGAAACGTGGTACTGGACCTACattca
aaataaagtttttaaccAAAGAGGAAACATTATTTTTCTCTGAATATGAT
ACTATCGAATCTATTAAAAGATATATCGCAAAGAAATATGATATTCGAAC
TTTCGAACAAGTTATTATGTTTAAAGGTGTGAGGTTGAAACATCTTGATA
AGATTTCCGATTTACGAGTTGACGAAGCcgaaatttgtttacatttggtt
atCGAAAGAAAGCCACTAGACCTTTGTATTCGAATGGGGTCATTTGAAAG
CCCGGTACAGACTATATCTATTACAGCAAGTCATACAAATAATATAAAAG
AGGTTATTCGAAAAATTACAGATGCTACTAATATCCCAATTAAATATTTG
AGTTTGGatgtaaaaatgaagaattcGAATGAGGAAAAAGATGATATTGT
TAGCCTTGACGATGAAGTGAAAGTAATTCAAGATTACCTAAACCCTGATG
GAAGTTGTCCACTTTTTCGTGTAAAACACGTGATAATAGCTAGGCTACAT
TTTCGAGAATCGAACCAAGTTGTCAACTATTATGAAACTGTAGAGGACGA
CTCTGGTGACACTATTGACGATTTATTGGTTAGAATTGTGATTGAAAGAA
AGTTGGGGAAAAGGAATTTCAATGATGTTCGAGATACGGTGAGTCGAgcg
aaattgaaaaataagacTCTCTTAAGaacactttttaaaattgatatcTC
AGTAAGTGACGCAATGGGGCCACTTTGTTGTGGTTGTTTTGGATGAACAA
ATAAAGTTAGTTAGCAAAGGATTTCAAAAggctttcaaattttctataaG
ATATTCTCTGAAGAATAGACCTTATCGGAGTTTTTTATTTTTctaaaaaa
gcgatgcattgtgggattgtttcgagtgtattacaatagaaatctcttag
gaattcctcgagggaattctattgtaatacactcaaaacaatcCCACATA
TGCATCgcgtttttagaaaaataaaaaactccgataaggtctatttctAA
TGACATGCCTAAGGCCCT Run BLAST on NCBI protein sequence of TCONS_00073714-protein >TCONS_00073714-protein ID=TCONS_00073714-protein|Name=TCONS_00073714-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MFKGVRLKHLDKISDLRVDEAEICLHLVIERKPLDLCIRMGSFESPVQTI
SITASHTNNIKEVIRKITDATNIPIKYLSLDVKMKNSNEEKDDIVSLDDE
VKVIQDYLNPDGSCPLFRVKHVIIARLHFRESNQVVNYYETVEDDSGDTI
DDLLVRIVIERKLGKRNFNDVRDTVSRAKLKNKTLLRTLFKIDISVSDAM
GPLCCGCFG Run BLAST on NCBI transcript from alignment at scaffold_97:346895..349018- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073714 ID=TCONS_00073714|Name=TCONS_00073714|organism=Clytia hemisphaerica|type=transcript|length=2124bp|location=Sequence derived from alignment at scaffold_97:346895..349018- (Clytia hemisphaerica)
AAATTACTTTGATAACCATTCTCTATAAGTAATTTAACATGATTAAAGAT
TGAAGAAGCAATTGTCTGGTATTGAGGTGAAAACAATGCTAAAGTAAAAA
TCAAACCAAAGATATCAACGACGATTCGATCAATCATGGCATTTTTTCAT
CAACCATTGTTGAATACTTGGTGAGTATTTTAGTAACATTACTTACTTTA
TGTCAGAAATGTTTTCATCCTGTCAATCGAGCCACTCCCCAGTGACTTTT
TTCTCCTTTTAATCTTTCGAGCATCCTTCAATTTTTACTAGAAAATGCAT
CTTGGGAGGGGGGGTCTCAATGCCTTAGTCAAAATCTCAAGATTGTCTGT
AGGCTCGGTGGACGCGGGGAGATTTTAGCTTCTCCACTTTTAACCAAATT
AGATTTTGTTCTCAAATTTCTAACGAATTTTATCTCATTTGAGCCTTCAG
CCTCCCCACTTTTGACCAAATTAGATTTTTTTCTCAAATTTCTAACGAAT
TTTATCTCATTTGAGCCTTCAGCCTCCCCACCTTTAACCAAATTAGATTT
TTTTCTCAAATTTCTAGCGAATTTTATCTCATTTGAGCCTTCAGCCTCCC
CACCTTTGACCAAATTAGATTTTTTTCTCAATTTTTTTTATTATTACAAT
TTTTTTTATCTCATTTGAGCCTTCAGCCTCGCCATTAGTACTTTAGGCAA
AATGGGTGCCGGGTGTGTGTGAGCCATAAGAGCCCCTTTTTCACACCCTC
GTGTTCTCATTTAGAGCATAGTCAAATTTAAGCCCAGACCGTTAATTCGC
CTTATATGATTCTGCGGTCATTAAAGATTACAATTACGTCCACCAGCAAA
ATCAAAAAGTTGTGCTCTGGGTAGACTGGGTATGAGATTGATCATATAAT
TCGTTTTTATTCTCTTTCTATTAAAGCCTGCAGGTCAAGCAAGACGATAG
GATCATCCAGGCAAGAAACAATAAAACCCAAAAGGAAGAAANTGCAGATC
AAGCAAGACGATAGGATCATCCAGGCAAGAAACAATAAGACCCAAAAGGA
AGAAGCACAACCAAGTCACTTAAAAACGGTGAAACGTGGTACTGGACCTA
CATTCAAAATAAAGTTTTTAACCAAAGAGGAAACATTATTTTTCTCTGAA
TATGATACTATCGAATCTATTAAAAGATATATCGCAAAGAAATATGATAT
TCGAACTTTCGAACAAGTTATTATGTTTAAAGGTGTGAGGTTGAAACATC
TTGATAAGATTTCCGATTTACGAGTTGACGAAGCCGAAATTTGTTTACAT
TTGGTTATCGAAAGAAAGCCACTAGACCTTTGTATTCGAATGGGGTCATT
TGAAAGCCCGGTACAGACTATATCTATTACAGCAAGTCATACAAATAATA
TAAAAGAGGTTATTCGAAAAATTACAGATGCTACTAATATCCCAATTAAA
TATTTGAGTTTGGATGTAAAAATGAAGAATTCGAATGAGGAAAAAGATGA
TATTGTTAGCCTTGACGATGAAGTGAAAGTAATTCAAGATTACCTAAACC
CTGATGGAAGTTGTCCACTTTTTCGTGTAAAACACGTGATAATAGCTAGG
CTACATTTTCGAGAATCGAACCAAGTTGTCAACTATTATGAAACTGTAGA
GGACGACTCTGGTGACACTATTGACGATTTATTGGTTAGAATTGTGATTG
AAAGAAAGTTGGGGAAAAGGAATTTCAATGATGTTCGAGATACGGTGAGT
CGAGCGAAATTGAAAAATAAGACTCTCTTAAGAACACTTTTTAAAATTGA
TATCTCAGTAAGTGACGCAATGGGGCCACTTTGTTGTGGTTGTTTTGGAT
GAACAAATAAAGTTAGTTAGCAAAGGATTTCAAAAGGCTTTCAAATTTTC
TATAAGATATTCTCTGAAGAATAGACCTTATCGGAGTTTTTTATTTTTCT
AAAAAAGCGATGCATTGTGGGATTGTTTCGAGTGTATTACAATAGAAATC
TCTTAGGAATTCCTCGAGGGAATTCTATTGTAATACACTCAAAACAATCC
CACATATGCATCGCGTTTTTAGAAAAATAAAAAACTCCGATAAGGTCTAT
TTCTAATGACATGCCTAAGGCCCT Coding sequence (CDS) from alignment at scaffold_97:346895..349018- >TCONS_00073714 ID=TCONS_00073714|Name=TCONS_00073714|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_97:346895..349018- (Clytia hemisphaerica)
ATGTTTAAAGGTGTGAGGTTGAAACATCTTGATAAGATTTCCGATTTACG
AGTTGACGAAGCCGAAATTTGTTTACATTTGGTTATCGAAAGAAAGCCAC
TAGACCTTTGTATTCGAATGGGGTCATTTGAAAGCCCGGTACAGACTATA
TCTATTACAGCAAGTCATACAAATAATATAAAAGAGGTTATTCGAAAAAT
TACAGATGCTACTAATATCCCAATTAAATATTTGAGTTTGGATGTAAAAA
TGAAGAATTCGAATGAGGAAAAAGATGATATTGTTAGCCTTGACGATGAA
GTGAAAGTAATTCAAGATTACCTAAACCCTGATGGAAGTTGTCCACTTTT
TCGTGTAAAACACGTGATAATAGCTAGGCTACATTTTCGAGAATCGAACC
AAGTTGTCAACTATTATGAAACTGTAGAGGACGACTCTGGTGACACTATT
GACGATTTATTGGTTAGAATTGTGATTGAAAGAAAGTTGGGGAAAAGGAA
TTTCAATGATGTTCGAGATACGGTGAGTCGAGCGAAATTGAAAAATAAGA
CTCTCTTAAGAACACTTTTTAAAATTGATATCTCAGTAAGTGACGCAATG
GGGCCACTTTGTTGTGGTTGTTTTGGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073714-exon-scaffold_97-1575043694:348849..349018 | TCONS_00073714-exon-scaffold_97-1575043694:348849..349018 | Clytia hemisphaerica | exon |
| TCONS_00073714-exon-scaffold_97-1575043694:346895..348092 | TCONS_00073714-exon-scaffold_97-1575043694:346895..348092 | Clytia hemisphaerica | exon |
| TCONS_00073714-exon-scaffold_97-1510915933:348849..349018 | TCONS_00073714-exon-scaffold_97-1510915933:348849..349018 | Clytia hemisphaerica | exon |
| TCONS_00073714-exon-scaffold_97-1510915933:346895..348092 | TCONS_00073714-exon-scaffold_97-1510915933:346895..348092 | Clytia hemisphaerica | exon |
| TCONS_00073714-exon-scaffold_97-1491911889:348849..349018 | TCONS_00073714-exon-scaffold_97-1491911889:348849..349018 | Clytia hemisphaerica | exon |
| TCONS_00073714-exon-scaffold_97-1491911889:346895..348092 | TCONS_00073714-exon-scaffold_97-1491911889:346895..348092 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:346895..349018 - |
Blast
The following BLAST results are available for this feature:
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