|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073710 ID=TCONS_00073710|Name=TCONS_00073710|organism=Clytia hemisphaerica|type=transcript|length=946bp
TAAATACGGGATTCGATTTGATGGTCAGTTACCGAATATCGGAACAAACG
GAAATATGTCTTACAATGTGGTTTGGCGGTGTAACGGAATGATGGTCAAA
GGTGATTACCACAATGTGACAAACAACCTTGCCTTCCACAAACGGAACGC
TCAAGATAGTGATGGTCAAGGGACAGGTTGTATGCTGTGCGTCATCTCGA
AGCTCCGGCAATTTCCTGGCATTATGAACAACCATACAGAAGTGTGTAAC
AATGCTGCTGATGTGGCGAACGGTGGTGTCAATGTCAAAGATAGGAAGAA
TCCTTTACCTTTTTCTGCTGTCTTGAGAAACAATTTATTTAATGATGACT
TCATAGCAAATGACAATTTCATTGATAttcaaaatttcgattttcggccT
ATCCCGTTATCGGAAGCAGCTACGAAGAGGATTGGGCCTTACAATGATGT
GAATGAGACTGGCGTTTATTGGATCCCAGGGCGTGAAGAAAAGACGCCAT
CATTCCCTATCCCACCACACAAATCATTGATCGATATTCGAAACCCACGT
GATTCCCTTATATGGAAGAACGCGTATGGTTGTCATAAACACCGAGTATT
TTTCGGTGAAAGTCGGGAAACGATGATTAAACTCGGTGATGTTGAAAAGC
CGAGAAATATGATCGACTTACCGAgtcaattaaaaaataatttggttTAT
TATTGGAAAGTAGAAACCTTTTGTAATGACAATGGAGATTTGACGGTTGC
TAGGAAACGAGAATCTGTTAATGGAGACAGAATTAACTACGATTGGACCA
AAACCAGGACCATTGAGAGTCAGATATGGACATTCAAAACGAACTGACCT
AAAATCCTAAAATTGATATCATTCTTCAGTAATATTCTTCagtaatttct
tttcaaattttgtgagtatttttgtgctttaTCCAAAGAAACTCGc Run BLAST on NCBI protein sequence of TCONS_00073710-protein >TCONS_00073710-protein ID=TCONS_00073710-protein|Name=TCONS_00073710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
KYGIRFDGQLPNIGTNGNMSYNVVWRCNGMMVKGDYHNVTNNLAFHKRNA
QDSDGQGTGCMLCVISKLRQFPGIMNNHTEVCNNAADVANGGVNVKDRKN
PLPFSAVLRNNLFNDDFIANDNFIDIQNFDFRPIPLSEAATKRIGPYNDV
NETGVYWIPGREEKTPSFPIPPHKSLIDIRNPRDSLIWKNAYGCHKHRVF
FGESRETMIKLGDVEKPRNMIDLPSQLKNNLVYYWKVETFCNDNGDLTVA
RKRESVNGDRINYDWTKTRTIESQIWTFKTN Run BLAST on NCBI transcript from alignment at scaffold_97:294416..297766- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073710 ID=TCONS_00073710|Name=TCONS_00073710|organism=Clytia hemisphaerica|type=transcript|length=3351bp|location=Sequence derived from alignment at scaffold_97:294416..297766- (Clytia hemisphaerica)
TAAATACGGGATTCGATTTGATGGTCAGTTACCGAATATCGGAACAAACG
GAAATATGTCTTACAATGTGGTTTGGCGGTGTAACGGAATGATGGTCAAA
GGTGAGGCATTTGACTAGACTCGTAGACTCGGGGTCATTCTTTGTATTCT
TTCGCGAACATTGCATAGCTGAACACTTAACCGTTCATATTTTTAAGTGT
ATTTTCTCAAGCAACCTTGCTTCCCTCAAATCAAATACTTCAGACAGTGA
AGGCAAAAGCCGGAATCTGTGTCACTCCAAGACTCTGGAAAAGTTGAGGT
GGGCAAGAGGAGCAAGGGGAACTGGAAATGGGTCAAGAGGCAAGGAATAA
TTGGAATAGAAAGATGGGGAACAGCTCANAGCAAGGGGAACTGGAAAAGG
GTCAAGAGGCAAGGAATAATTGGAATAGAAAGATGGGGAACAGCTCAGCA
GGGCAAATTGGGTATGTAAATGGAAGGGGACGCTGTATACGTCCTAATTC
AATTGTCTATCTCCTTTTTGTTATAGGTGATTACCACAATGTGACAAACA
ACCTTGCCTTCCACAAACGGAACGCTCAAGATAGTGATGGTCAAGGGACA
GGTTGTATGCTGTGCGTCATCTCGAAGCTCCGGCAATTTCCTGGCATTAT
GAACAACCATACAGAAGTGTGTAACAATGCTGCTGATGTGGCGAACGGTG
GTGTCAATGTCAAAGATAGGAAGAATCCTTTACCTTTTTCTGCTGTCTTG
AGTGAGTGCAAATTATTACTATTTATTAAATCAAAAAATTTAAACTGAAA
ACTACAAGAAAAATGTTCTGTTCAGGGGCTTGCAATACTGTTGTACCCCA
GTCATGTACTTATGTCATTATATTGTCACATTAATTCGAACTGCAGCGGG
GGTCCAATTTGTTCGAATTACAGAGTGATTTCAATTATAAAAACTATTTT
AGAAGGGTTTTCTTTACCGTTCACTGCTGTCTTGAGTAACTCCCGCTAAT
CTCAAACTCGAACGGGAAGTCTTTTTTGGTTCAAATTATAGAAGCGATAG
TCCATTTGAGACTTTACGAGGCATTTCTAACAGAAAAAAAACAAATTAAA
AAAGGGTCACTTGCCATGAAACCACTGACTTTTGTATATCCCTGGACCAA
GCTATATCCGCCATCTTTGATCGCAACTGTTTTTAATTTGTACCCGTAAA
GAAGCAATTGCAATGTTAAAAATTAATGTCTAACGGCGCTACATCATCAA
AAGTTTTCGAGGGAAAGTAGATATAGCGCTCTCGATGCATTTACACCGCT
ATTGAGTAGTGCCACCATTAGGGTACCACTTTTCAAAAAACTCAAAGATT
TAGTTTGGCCGAGATTGGGAAACTTGGTCCAGGGTATATAAAGGTCAGTA
CATAAAACACCTAGCCCAAAGCGATCAAGAATCTTGTAGGGCGTGAAGGC
CCAGCGACTCAATAAAGTAACAAGGCGCCGTTTCTTCAAAACTGAACTTG
AATAGACAAAGTGCTGCTTATTCAAAAACGGACATACAGTACATGCGACA
TGAAAGGCCAAATGCTGGGCCAACTATTAATCAAAGAAAATTAATTGAGT
GTTTGTTTAATATTTAGGAAACAATTTATTTAATGATGACTTCATAGCAA
ATGACAATTTCATTGATATTCAAAATTTCGATTTTCGGCCTATCCCGTTA
TCGGAAGCAGCTACGAAGAGGATTGGGCCTTACAATGATGTGAATGAGAC
TGGCGTTTATTGGATCCCAGGTGAGAAAAAGAACTTTTCTTGTACCAATA
GTAAAGAGGGCACATTGAGTTGCGAACACCGAAATAACGGCGCTTTCTTT
CTTTTCTTTCTTCTTCTTTACCTTCCACACCGCTTAAAAGAATTTCTAAA
AGTCTGACATTTTCACCGCGTGAGAAACCGTTACTTTTTTCCTCAAACAC
CAAAAAACCGACGAAAAAGGGAAATAATACCCATAATTATATGGTTGATT
ATATTTAGCTTAGATTTGTAAAGGACGAGCGGGGTGATAAATCCGTAATA
GCCCCGCTTTTTTGTAATCGCCCTGATGTAAACNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNATCGTACGAAATTTTTAAGCCAATCAAAATAAGAGTGT
CAGTCGAATGTTTTTTTATAGTTTCGAATGTTTTTATAAGTTTCGAAAAG
AATAGCGATTGAGTGTTCTAAACCATGTTATTACTAGTACTAATACCGTC
ACACTTCAAACATGCATTCTCTGCCCTAAGGAAGCTAGCACACAAAATTA
GCGTTTTTTTGCGGGAACTAAAATTTCGCGATGGATACCCTCTTTTTTCA
GTTTCTTTGTAGTTTTTACAGATTTATGATTCGTAAAAAAATTTTGAGTA
ATTTTTCAACAACCAGTTGCCTATTAAACGGAGAGGGTCCCTTTGGTGAT
TTAATTTTATTGTTTGTGAGAAAAGAGTTTGCGAATTTCCTTGGTGGACC
GTAATATACGCCTGAATATTATTTTCTTACGAAGACCAGGAATCCATTTG
TTCGAGTTAAGAAAAATTCAAGTTATGGAGTAAGGTTCATAAGGCATTGT
TACCTGAAGGGACGAGAGAACTTGTTCGAGTTAAGGAGACCTTACTGTAT
TACAATACATATGAACATTCAAAAACGTTCTGTTTCAGCCAGGAAATCCC
ACATGATAAATCAGCATTACGTTTTACATTATAGGGCGTGAAGAAAAGAC
GCCATCATTCCCTATCCCACCACACAAATCATTGATCGATATTCGAAACC
CACGTGATTCCCTTATATGGAAGAACGCGTATGGTTGTCATAAACACCGA
GTATTTTTCGGTGAAAGTCGGGAAACGATGATTAAACTCGGTGATGTTGA
AAAGCCGAGAAATATGATCGACTTACCGAGTCAATTAAAAAATAATTTGG
TTTATTATTGGAAAGTAGAAACCTTTTGTAATGACAATGGAGATTTGACG
GTTGCTAGGAAACGAGAATCTGTTAATGGAGACAGAATTAACTACGATTG
GACCAAAACCAGGACCATTGAGAGTCAGATATGGACATTCAAAACGAACT
GACCTAAAATCCTAAAATTGATATCATTCTTCAGTAATATTCTTCAGTAA
TTTCTTTTCAAATTTTGTGAGTATTTTTGTGCTTTATCCAAAGAAACTCG
C Coding sequence (CDS) from alignment at scaffold_97:294416..297766- >TCONS_00073710 ID=TCONS_00073710|Name=TCONS_00073710|organism=Clytia hemisphaerica|type=CDS|length=3384bp|location=Sequence derived from alignment at scaffold_97:294416..297766- (Clytia hemisphaerica)
GGCGTGAAGAAAAGACGCCATCATTCCCTATCCCACCACACAAATCATTG
ATCGATATTCGAAACCCACGTGATTCCCTTATATGGAAGAACGCGTATGG
TTGTCATAAACACCGAGTATTTTTCGGTGAAAGTCGGGAAACGATGATTA
AACTCGGTGATGTTGAAAAGCCGAGAAATATGATCGACTTACCGAGTCAA
TTAAAAAATAATTTGGTTTATTATTGGAAAGTAGAAACCTTTTGTAATGA
CAATGGAGATTTGACGGTTGCTAGGAAACGAGAATCTGTTAATGGAGACA
GAATTAACTACGATTGGACCAAAACCAGGACCATTGAGAGTCAGATATGG
ACATTCAAAACGAACTGAGAAACAATTTATTTAATGATGACTTCATAGCA
AATGACAATTTCATTGATATTCAAAATTTCGATTTTCGGCCTATCCCGTT
ATCGGAAGCAGCTACGAAGAGGATTGGGCCTTACAATGATGTGAATGAGA
CTGGCGTTTATTGGATCCCAGGTGATTACCACAATGTGACAAACAACCTT
GCCTTCCACAAACGGAACGCTCAAGATAGTGATGGTCAAGGGACAGGTTG
TATGCTGTGCGTCATCTCGAAGCTCCGGCAATTTCCTGGCATTATGAACA
ACCATACAGAAGTGTGTAACAATGCTGCTGATGTGGCGAACGGTGGTGTC
AATGTCAAAGATAGGAAGAATCCTTTACCTTTTTCTGCTGTCTTGAAAAT
ACGGGATTCGATTTGATGGTCAGTTACCGAATATCGGAACAAACGGAAAT
ATGTCTTACAATGTGGTTTGGCGGTGTAACGGAATGATGGTCAAAGGGCG
TGAAGAAAAGACGCCATCATTCCCTATCCCACCACACAAATCATTGATCG
ATATTCGAAACCCACGTGATTCCCTTATATGGAAGAACGCGTATGGTTGT
CATAAACACCGAGTATTTTTCGGTGAAAGTCGGGAAACGATGATTAAACT
CGGTGATGTTGAAAAGCCGAGAAATATGATCGACTTACCGAGTCAATTAA
AAAATAATTTGGTTTATTATTGGAAAGTAGAAACCTTTTGTAATGACAAT
GGAGATTTGACGGTTGCTAGGAAACGAGAATCTGTTAATGGAGACAGAAT
TAACTACGATTGGACCAAAACCAGGACCATTGAGAGTCAGATATGGACAT
TCAAAACGAACTGAGAAACAATTTATTTAATGATGACTTCATAGCAAATG
ACAATTTCATTGATATTCAAAATTTCGATTTTCGGCCTATCCCGTTATCG
GAAGCAGCTACGAAGAGGATTGGGCCTTACAATGATGTGAATGAGACTGG
CGTTTATTGGATCCCAGGTGATTACCACAATGTGACAAACAACCTTGCCT
TCCACAAACGGAACGCTCAAGATAGTGATGGTCAAGGGACAGGTTGTATG
CTGTGCGTCATCTCGAAGCTCCGGCAATTTCCTGGCATTATGAACAACCA
TACAGAAGTGTGTAACAATGCTGCTGATGTGGCGAACGGTGGTGTCAATG
TCAAAGATAGGAAGAATCCTTTACCTTTTTCTGCTGTCTTGAAAATACGG
GATTCGATTTGATGGTCAGTTACCGAATATCGGAACAAACGGAAATATGT
CTTACAATGTGGTTTGGCGGTGTAACGGAATGATGGTCAAAGGGCGTGAA
GAAAAGACGCCATCATTCCCTATCCCACCACACAAATCATTGATCGATAT
TCGAAACCCACGTGATTCCCTTATATGGAAGAACGCGTATGGTTGTCATA
AACACCGAGTATTTTTCGGTGAAAGTCGGGAAACGATGATTAAACTCGGT
GATGTTGAAAAGCCGAGAAATATGATCGACTTACCGAGTCAATTAAAAAA
TAATTTGGTTTATTATTGGAAAGTAGAAACCTTTTGTAATGACAATGGAG
ATTTGACGGTTGCTAGGAAACGAGAATCTGTTAATGGAGACAGAATTAAC
TACGATTGGACCAAAACCAGGACCATTGAGAGTCAGATATGGACATTCAA
AACGAACTGAGAAACAATTTATTTAATGATGACTTCATAGCAAATGACAA
TTTCATTGATATTCAAAATTTCGATTTTCGGCCTATCCCGTTATCGGAAG
CAGCTACGAAGAGGATTGGGCCTTACAATGATGTGAATGAGACTGGCGTT
TATTGGATCCCAGGTGATTACCACAATGTGACAAACAACCTTGCCTTCCA
CAAACGGAACGCTCAAGATAGTGATGGTCAAGGGACAGGTTGTATGCTGT
GCGTCATCTCGAAGCTCCGGCAATTTCCTGGCATTATGAACAACCATACA
GAAGTGTGTAACAATGCTGCTGATGTGGCGAACGGTGGTGTCAATGTCAA
AGATAGGAAGAATCCTTTACCTTTTTCTGCTGTCTTGAAAATACGGGATT
CGATTTGATGGTCAGTTACCGAATATCGGAACAAACGGAAATATGTCTTA
CAATGTGGTTTGGCGGTGTAACGGAATGATGGTCAAAGGGCGTGAAGAAA
AGACGCCATCATTCCCTATCCCACCACACAAATCATTGATCGATATTCGA
AACCCACGTGATTCCCTTATATGGAAGAACGCGTATGGTTGTCATAAACA
CCGAGTATTTTTCGGTGAAAGTCGGGAAACGATGATTAAACTCGGTGATG
TTGAAAAGCCGAGAAATATGATCGACTTACCGAGTCAATTAAAAAATAAT
TTGGTTTATTATTGGAAAGTAGAAACCTTTTGTAATGACAATGGAGATTT
GACGGTTGCTAGGAAACGAGAATCTGTTAATGGAGACAGAATTAACTACG
ATTGGACCAAAACCAGGACCATTGAGAGTCAGATATGGACATTCAAAACG
AACTGAGAAACAATTTATTTAATGATGACTTCATAGCAAATGACAATTTC
ATTGATATTCAAAATTTCGATTTTCGGCCTATCCCGTTATCGGAAGCAGC
TACGAAGAGGATTGGGCCTTACAATGATGTGAATGAGACTGGCGTTTATT
GGATCCCAGGTGATTACCACAATGTGACAAACAACCTTGCCTTCCACAAA
CGGAACGCTCAAGATAGTGATGGTCAAGGGACAGGTTGTATGCTGTGCGT
CATCTCGAAGCTCCGGCAATTTCCTGGCATTATGAACAACCATACAGAAG
TGTGTAACAATGCTGCTGATGTGGCGAACGGTGGTGTCAATGTCAAAGAT
AGGAAGAATCCTTTACCTTTTTCTGCTGTCTTGAAAATACGGGATTCGAT
TTGATGGTCAGTTACCGAATATCGGAACAAACGGAAATATGTCTTACAAT
GTGGTTTGGCGGTGTAACGGAATGATGGTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073710-exon-scaffold_97-1575043694:297666..297766 | TCONS_00073710-exon-scaffold_97-1575043694:297666..297766 | Clytia hemisphaerica | exon |
| TCONS_00073710-exon-scaffold_97-1575043694:297016..297240 | TCONS_00073710-exon-scaffold_97-1575043694:297016..297240 | Clytia hemisphaerica | exon |
| TCONS_00073710-exon-scaffold_97-1575043694:295997..296149 | TCONS_00073710-exon-scaffold_97-1575043694:295997..296149 | Clytia hemisphaerica | exon |
| TCONS_00073710-exon-scaffold_97-1575043694:294416..294882 | TCONS_00073710-exon-scaffold_97-1575043694:294416..294882 | Clytia hemisphaerica | exon |
| TCONS_00073710-exon-scaffold_97-1510915933:297666..297766 | TCONS_00073710-exon-scaffold_97-1510915933:297666..297766 | Clytia hemisphaerica | exon |
| TCONS_00073710-exon-scaffold_97-1510915933:297016..297240 | TCONS_00073710-exon-scaffold_97-1510915933:297016..297240 | Clytia hemisphaerica | exon |
| TCONS_00073710-exon-scaffold_97-1510915933:295997..296149 | TCONS_00073710-exon-scaffold_97-1510915933:295997..296149 | Clytia hemisphaerica | exon |
| TCONS_00073710-exon-scaffold_97-1510915933:294416..294882 | TCONS_00073710-exon-scaffold_97-1510915933:294416..294882 | Clytia hemisphaerica | exon |
| TCONS_00073710-exon-scaffold_97-1491911889:297666..297766 | TCONS_00073710-exon-scaffold_97-1491911889:297666..297766 | Clytia hemisphaerica | exon |
| TCONS_00073710-exon-scaffold_97-1491911889:297016..297240 | TCONS_00073710-exon-scaffold_97-1491911889:297016..297240 | Clytia hemisphaerica | exon |
| TCONS_00073710-exon-scaffold_97-1491911889:295997..296149 | TCONS_00073710-exon-scaffold_97-1491911889:295997..296149 | Clytia hemisphaerica | exon |
| TCONS_00073710-exon-scaffold_97-1491911889:294416..294882 | TCONS_00073710-exon-scaffold_97-1491911889:294416..294882 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:294416..297766 - |
Blast
The following BLAST results are available for this feature:
|
