TCONS_00073708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073708
Unique NameTCONS_00073708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073708 ID=TCONS_00073708|Name=TCONS_00073708|organism=Clytia hemisphaerica|type=transcript|length=2750bp
tttagaaaatacataaagatgaagaaaataaaaaccatATTAGCGCTGTT
TTCAATCTTGACATGTCATTGGTTAATTACTCCAGTCCACAGTTCAGAAC
TTAAGCAACACCAAGTGGAAcataaccaagcaaaaagaCAACATCAAGTT
CAACAGCAAGCACATTATAACCAGAAATATCAACAACAGCACTTTAACTA
CAAGAATCAGATAGAACACCAAAGACGACaacagcaaaaaacatcaaCGT
ACCGACAGCCTGTGTACCAACATAAAAAGAGACCAGTCTATCATTATAAG
AAACAACCTGTCTATCACAACAAGAAAACATATCACTATAAAAAGAAGTA
CAAGTACATCAAATGGCCACGCATTCGAGGGCGTTGCAAATACTCGCCCT
GGACCGTTGATGGCGTTAACCCTGTTTTAGATGAAGCCGACAAAGGGAAT
ATGGTTTTGTTGTTCATGTTGAAAGTTGGAGACCCGTTCTCATATAACCA
GCTAGGAAGATTGAATGATTTAGCTGAACATTACCTCGATATTGGCAGAA
AGATTACAGTTATGGCTTTAGCTCATCGACGACGCACAATCCCTGCAAGT
TACCGTGAACGATTCCCATTGGTTCAATTCCATCAAGAACCgaaatccaa
aaatatatacaacCAAATCCGTGCTAAATATCGATTTAACATCATCTACG
ATAAATGCGGACGTCAACAATACCACTTCGGGCCACCGTATAGTTGGCTA
GGTTACGACATTACGAGgCTTGCCATTGAAAATGTTCGAAGATTTCATAC
CGACTACAACTTGTGTGGGAAATGTAGAGCAAGACCCTTAACAACAGTTG
GCCCAACAAACGCCCTGAATTCGACCGCCACTGCCCCGCCCTCTACTAAG
CCACCCACTAAGGCGACAGAATCAGCAGTTGATGGACCGTACACAAATAT
CCCGGTTGCCGTCAAAAAAGCATGAACATCAAAACTGTACTAAAAGTGAc
gtaaatttcgaatgcaaccAATAGAtttgtttcatttcatttcggagcga
aacgaaacattagcgtgtgaacgtggtctaAGTATTATGAAAAATGTATT
TTAGTACAAAAACTAGATTTACTTCACACTGTTTAGGTTTAGCTAAAGGT
ATGACTTTAGGGCAATGAAATGAGTGGGATTTGCGAAGGTTGGACTAAGA
CTTTGtttcaagaaattcaaatttttgatacatGTTGGAGCCACACCCTA
AAATCGAGCAAGTTTCAAACTTTCGTCAGAGAATAATCTTGACCGTGTGC
CATCCTACGGCAAAATAACTAGATACTACAGTACTTTTGATCATATTTTT
GAACTATTATAGCAATaaggtttttattttcatataatttcatcaggttt
ttatatcaaaatcattttagtggtatgtaaaaatcgaaaatatgtACATc
tcaaaataattcaaaaatatatttttctctaGAAAACTTGGGATTATAAT
ATATACATAGTTTAGGTCTCAATGAATTTGGTTAGGTTAGATTAGTAAGA
TTTTTGTTGGCACGTGTTAGAGTAGCTTTAGGAACataatttccatattt
ttttttgttgttccATTAATTTCTCTTGGCTTTTAATCAGCATCATACAG
TACTCTTGATACGCCAAGAGCTGCATGGGAGAAGATTGGACACCCAAGTT
TATCAGGCTCGAATGACGTCAAATACAGAGGCACCCAAAAATAGCCCGGG
CGTTGGCCACCagttttattgtttgaatttAGTAGTAAACACACGGCCAT
TTTTTGGGTGCCttacgtcataaatatcatgaattaaaatCCTATGTGGA
TAATCCTATTTATAATGAGTCAATCTAAAAAAAGATGTAAcctcccagct
gacacacaacattgtttcgaCGTTAATCTAGTGTTtacaacgtccaaata
acgttagattaacgttgaaacaacgttgtgtgccaagcGGGCTGTGAAAG
TGAAACTGAATGAAATACATTTCGAGAGAAACACACCTGAAAGGTCCTTT
ACAAATTTAGATAGGCTAACTGCTCACTGAATTCCCGTGAAAGGCTATCC
AGTTTTGAAGTCGAATTGTCCGCCATGTTGTTTTCTAGTTTACTTTAGAC
TTTTGAGCgatcgaatttcaaaacatttaaacGGGAAGCCCGTTCCAGTC
AAGAAGATAGAGATCCGTCGCTGGAATGGTCTGGATTTGTGAACTTATTA
TTACTTGGGGAAACATTTTAAGTAAGTATTTTCATGTCATGACTGTTGGT
AGAGCCGTGAGTAAGAGGGGGTTTACCcctttttctatttgcgctagacc
tgggagcaatacacctactctcagctccctgTAACTAACcacctagatca
gattaccaaatctaagctactcattcgcTGAGTTTGCGGTGACTGGGGaa
cgaacccacaacccttggataccgactgagctacccggcaaTTAGTTTAA
TATTTACTGGTCAATCAAACGTTTATAAGttagtaaaatttttaaaactc
acGTTATAGTTGCCTTGTTAGTTGATTAGActgtgaaaaataatttcttc
caATACAAATAATACGCCCATATAATCCATATCAGTGTGCCACCGCCCGC
TCTGACTGTGGCAGAAGTGTGCGTCTGGGGATCTGTGTGCCAGTAGAAGT
TGAACGGTATTAACATGTGACCGAGATAGAGCGCAATGGCATTCATACCT
Run BLAST on NCBI

transcript from alignment at scaffold_97:283812..289284-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073708 ID=TCONS_00073708|Name=TCONS_00073708|organism=Clytia hemisphaerica|type=transcript|length=5473bp|location=Sequence derived from alignment at scaffold_97:283812..289284- (Clytia hemisphaerica)
TTTAGAAAATACATAAAGATGAAGAAAATAAAAACCATATTAGCGCTGTT
TTCAATCTTGACATGTCATTGGTTAATTACTCCAGTCCACAGTTCAGAAC
TTAAGCAACACCAAGTGGAACATAACCAAGCAAAAAGACAACATCAAGTT
CAACAGCAAGCACATTATAACCAGAAATATCAACAACAGCACTTTAACTA
CAAGAATCAGGTAAGGTTTAGACCCAATATCAATTGAATGCAGGGTTGCT
ACCGGTTTGCAAAGTTGAAAATTCCAGACTCAAAAAACGCAAGTAAAAAG
GGTGAATTTCAATTTATTTTGGTCACGTGATCAATATCGATCGATAATCT
ACACCTACAGTCGTTTAGCTGGGTGGCGTCACGTTTTCCTTCAACTCCAA
CGAGTACTGACCACTATCTGACGCGTATTTTGATCATTTGATCAAAAACG
ATAGGTGAATATTTATCAACCTCGAAAAGTTCAACCAGAAGTAGACTTTA
GTTTATTTCGAGCTTGCTTGGATTTATACGAAGAAATTGAGGAAATTTGG
GTTGACACTAAGGAAATTTGGGCTGACACTAAGGAAATAACTAAACACTC
ATAAATAATGCTTATGACACAACCCTTCAGATATTCTTAACTTTTCGAGT
TAAATCAGGCGTTTCAAAGTCAAATAGGCCTTAAAATGTTCTTAACTTGT
TCTTAATATTTTTGCTAACCAAAGCCTATGTTTGTTCCTATTTTTTTAAT
GTTTTTTTTTTCTTTCCCTAGATAGAACACCAAAGACGACAACAGCAAAA
AACATCAACGTACCGACAGCCTGTGTACCAACATAAAAAGAGACCAGTCT
ATCATTATAAGAAACAACCTGTCTATCACAACAAGAAAACATATCACTAT
AAAAAGAAGTGAGTACAACCTCGTTCCCTGTATAGTATCGGCTTTTTGAT
GTTCATTGATAGCGATTAAGTCCATTGGCCCCCCCCTGTTAAGGATACCG
GATATCCAGGGTGTTAACGATTTTTGATCAAAAGTGGATATCTAGGGAGT
TAAATATCTACAAGGGAGCGGATATCCAGGGGGTAAAGTGTCTTTTCATA
TAAAAAATACGATATCCAGGGGGTAAGCATCATTATAAGAGAGGATATCC
AGGGAGTTGAGCATATTTTTAAGAGTGGATACCCAGGGGGGTCTTTACTA
ATAAAGTAGGATATCCAGGGGGTTCGATACTTCGAAAAATCAATATCCTT
AACAGTGGCGGTAAAATTTCTTTCTGGAAAAGTCCATTAGTAACGAAGAC
GAACCCTGGTGCACACGGGATCGAGGTTGGTAAAAATGCTTTGATTAACT
TGGATAAGGACAGATGGTCCAATTGACAGAACCGTCAGTGTTACAATCCT
ACTCCTCCAAATATTTCGTCCAGTTGATATAGCCGAGCCGGCTGGCCGTG
AGTCCCATTAAATGATCGAAGGAGTAAAAGTTCTACCTAACATCAAACGG
TGCTAGGAAAAATAAATCTAGTGATCTCAATGTATTACACCGCTATTGAG
TATATTGAATGTTGGGACATTAGATTAGGGTATCACTTTAGAAAAACTCT
AATCAAAAGATCTTAACTGCTAGCCAGGTTGAGAACTTAGTGCAATCTCG
TACCCGGAGCCACTTGTACCACGTTTTGATTTTAATAATGGACGTAAATA
CAATGGTTCGTGCATGCTATCCAAATCATCAAAAAGCAAATAAAGGACTG
GATTCGAGTTCGAGCTCAGTGGTGACGATAGATAAACAGACGACACAGAG
CAAAGTACAATTTCTAAATCTCACGTTTCTTTTTGTAGGTACAAGTATNC
AGGGCAAAGTACAATTTCTAAATCTCACGTTTCTTTTCTGTAGGTACAAG
TACATCAAATGGCCACGCATTCGAGGGCGTTGCAAATACTCGCCCTGGAC
CGTTGATGGCGTTAACCCTGTTTTAGATGAAGCCGACAAAGGGAATATGG
TTTTGTTGTTCATGTTGAAAGTTGGAGACCCGTTCTCATATAACCAGCTA
GGAAGATTGAATGATTTAGCTGAACATTACCTGTAAGGTCTTTTCGAATA
ATTTTAAGTTTTTTTGCAGTGTTTTACCATATTTTGATACCCATTACAAT
CCAAATCTTCTGTCACCGATACGCGCCAATACGACAAGGACTTGACCGGT
CAGATTGGTTCATCCCATGAATAGTTCTGCAATCTTAGTTTTTAGCGGAA
ATGTTTTAATTTGATTATTGAACTTTGAGATTGTTGTGGGTAAGTAAGGT
ATATAGTAAAGCCCCGGCTGCCGTCCTTTGGTAAACTGGCGTATTTCACA
AGATTTTTTAAAAAAAGGTTAAGGGTTTTGAAGGGCACTCTTTCCAAAGT
TTTGGCCACTATGAATGAATTCTGATTGGAAAATCCATACACCCTTATCT
TCGTTGGGACATAGTTACTGTTGATATTGAAGAGTTGCTTTGTTTTGAAA
ATAATCTAATATTTTTGCATATTGGATTCAACTTAGAATATCTGTTTCCA
TCATTTACCTTACAGCGATATTGGCAGAAAGATTACAGTTATGGCTTTAG
CTCATCGACGACGCACAATCCCTGCAAGTTACCGTGAACGATTCCCATTG
GTTCAATTCCATCAAGAACCGAAATCCAAAAATATATACAACCAAATCCG
TGCTAAATATCGATTTAACATCATCTACGATAAATGCGGACGTCAACAAT
ACCACTTCGGGCCACCGTATAGTTGGCTAGGTTACGACATTACGAGGTAA
GGCTATGGCGATAACATTCTTAACGTTTAGTTTTCCCGCAATAAGGCGGG
ATTTCGGGAATGCGGGATCACTGTATAGTTTGCTAGTTTACGATATCAAA
AGTTTAGGCTATGGCGGTAGCTTTCTTGAAAAAACTCAATTTTACGATAA
TACAGGCGTGAACAACCACTCCGCCAATACCACTTCGTGCCACCGTATAG
TTGGCTAGGTTACGATATTACAAGGTAAGGCTATGGCTGTAGAATTCTTA
ATAACACTCAATTTTCGTTTACTTTTACGATAATCCGGGCGTCAGCAATA
CCATTTACATCTTATAAAATGATAATTACTGTGTATACAACTATGTTCCC
TTAAAAGAAAATGTATAACGCCTGACATTGGTCTCTTCCAGAAAAAATTT
GTTCATGGGGGTTAGAGGATATATTATTTTTTCAATGATCTACCCCTGGA
CATTTCGATTTTTCACCCCCTGGACACGCGTTTTACCCCTGGTCAAGCAT
CAAAACGACCCCCTGGATACTAAAATTTACTCCTGGACTTTGCAAATTCA
CCCCATGGACATCTAGCAGTTTTCAGGATTTCGATACCCCTGGACAATAT
ATCTTCCACCCCCTAAGAACCGTTTTTTCTGGAAGAACCCATTTACAACA
AACGGATGACAGAAGACAAAACAAACATTTTTCTTTCTAGGCTTGCCATT
GAAAATGTTCGAAGATTTCATACCGACTACAACTTGTGTGGGAAATGTAG
AGCAAGACCCTTAACAACAGTTGGCCCAACAAACGCCCTGAATTCGACCG
CCACTGCCCCGCCCTCTACTAAGCCACCCACTAAGGCGACAGAATCAGCA
GTTGATGGACCGTACACAAATATCCCGGTTGCCGTCAAAAAAGCATGAAC
ATCAAAACTGTACTAAAAGTGACGTAAATTTCGAATGCAACCAATAGATT
TGTTTCATTTCATTTCGGAGCGAAACGAAACATTAGCGTGTGAACGTGGT
CTAAGTATTATGAAAAATGTATTTTAGTACAAAAACTAGATTTACTTCAC
ACTGTTTAGGTTTAGCTAAAGGTATGACTTTAGGGCAATGAAATGAGTGG
GATTTGCGAAGGTTGGACTAAGACTTTGTTTCAAGAAATTCAAATTTTTG
ATACATGTTGGAGCCACACCCTAAAATCGAGCAAGTTTCAAACTTTCGTC
AGAGAATAATCTTGACCGTGTGCCATCCTACGGCAAAATAACTAGATACT
ACAGTACTTTTGATCATATTTTTGAACTATTATAGCAATAAGGTTTTTAT
TTTCATATAATTTCATCAGGTTTTTATATCAAAATCATTTTAGTGGTATG
TAAAAATCGAAAATATGTACATCTCAAAATAATTCAAAAATATATTTTTC
TCTAGAAAACTTGGGATTATAATATATACATAGTTTAGGTCTCAATGAAT
TTGGTTAGGTTAGATTAGTAAGATTTTTGTTGGCACGTGTTAGAGTAGCT
TTAGGAACATAATTTCCATATTTTTTTTTGTTGTTCCATTAATTTCTCTT
GGCTTTTAATCAGCATCATACAGTACTCTTGATACGCCAAGAGCTGCATG
GGAGAAGATTGGACACCCAAGTTTATCAGGCTCGAATGACGTCAAATACA
GAGGCACCCAAAAATAGCCCGGGCGTTGGCCACCAGTTTTATTGTTTGAA
TTTAGTAGTAAACACACGGCCATTTTTTGGGTGCCTTACGTCATAAATAT
CATGAATTAAAATCCTATGTGGATAATCCTATTTATAATGAGTCAATCTA
AAAAAAGATGTAACCTCCCAGCTGACACACAACATTGTTTCGACGTTAAT
CTAGTGTTTACAACGTCCAAATAACGTTAGATTAACGTTGAAACAACGTT
GTGTGCCAAGCGGGCTGTGAAAGTGAAACTGAATGAAATACATTTCGAGA
GAAACACACCTGAAAGGTCCTTTACAAATTTAGATAGGCTAACTGCTCAC
TGAATTCCCGTGAAAGGCTATCCAGTTTTGAAGTCGAATTGTCCGCCATG
TTGTTTTCTAGTTTACTTTAGACTTTTGAGCGATCGAATTTCAAAACATT
TAAACGGGAAGCCCGTTCCAGTCAAGAAGATAGAGATCCGTCGCTGGAAT
GGTCTGGATTTGTGAACTTATTATTACTTGGGGAAACATTTTAAGTAAGT
ATTTTCATGTCATGACTGTTGGTAGAGCCGTGAGTAAGAGGGGGTTTACC
CCTTTTTCTATTTGCGCTAGACCTGGGAGCAATACACCTACTCTCAGCTC
CCTGTAACTAACCACCTAGATCAGATTACCAAATCTAAGCTACTCATTCG
CTGAGTTTGCGGTGACTGGGGAACGAACCCACAACCCTTGGATACCGACT
GAGCTACCCGGCAATTAGTTTAATATTTACTGGTCAATCAAACGTTTATA
AGTTAGTAAAATTTTTAAAACTCACGTTATAGTTGCCTTGTTAGTTGATT
AGACTGTGAAAAATAATTTCTTCCAATACAAATAATACGCCCATATAATC
CATATCAGTGTGCCACCGCCCGCTCTGACTGTGGCAGAAGTGTGCGTCTG
GGGATCTGTGTGCCAGTAGAAGTTGAACGGTATTAACATGTGACCGAGAT
AGAGCGCAATGGCATTCATACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045766XLOC_045766Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073708-exon-scaffold_97-1575043694:289075..289284TCONS_00073708-exon-scaffold_97-1575043694:289075..289284Clytia hemisphaericaexon
TCONS_00073708-exon-scaffold_97-1575043694:288377..288513TCONS_00073708-exon-scaffold_97-1575043694:288377..288513Clytia hemisphaericaexon
TCONS_00073708-exon-scaffold_97-1575043694:287203..287391TCONS_00073708-exon-scaffold_97-1575043694:287203..287391Clytia hemisphaericaexon
TCONS_00073708-exon-scaffold_97-1575043694:286489..286719TCONS_00073708-exon-scaffold_97-1575043694:286489..286719Clytia hemisphaericaexon
TCONS_00073708-exon-scaffold_97-1575043694:283812..285794TCONS_00073708-exon-scaffold_97-1575043694:283812..285794Clytia hemisphaericaexon
TCONS_00073708-exon-scaffold_97-1510915933:289075..289284TCONS_00073708-exon-scaffold_97-1510915933:289075..289284Clytia hemisphaericaexon
TCONS_00073708-exon-scaffold_97-1510915933:288377..288513TCONS_00073708-exon-scaffold_97-1510915933:288377..288513Clytia hemisphaericaexon
TCONS_00073708-exon-scaffold_97-1510915933:287203..287391TCONS_00073708-exon-scaffold_97-1510915933:287203..287391Clytia hemisphaericaexon
TCONS_00073708-exon-scaffold_97-1510915933:286489..286719TCONS_00073708-exon-scaffold_97-1510915933:286489..286719Clytia hemisphaericaexon
TCONS_00073708-exon-scaffold_97-1510915933:283812..285794TCONS_00073708-exon-scaffold_97-1510915933:283812..285794Clytia hemisphaericaexon
TCONS_00073708-exon-scaffold_97-1491911889:289075..289284TCONS_00073708-exon-scaffold_97-1491911889:289075..289284Clytia hemisphaericaexon
TCONS_00073708-exon-scaffold_97-1491911889:288377..288513TCONS_00073708-exon-scaffold_97-1491911889:288377..288513Clytia hemisphaericaexon
TCONS_00073708-exon-scaffold_97-1491911889:287203..287391TCONS_00073708-exon-scaffold_97-1491911889:287203..287391Clytia hemisphaericaexon
TCONS_00073708-exon-scaffold_97-1491911889:286489..286719TCONS_00073708-exon-scaffold_97-1491911889:286489..286719Clytia hemisphaericaexon
TCONS_00073708-exon-scaffold_97-1491911889:283812..285794TCONS_00073708-exon-scaffold_97-1491911889:283812..285794Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:283812..289284 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0290074	0.0183353	0.00908104	7.32124	6.81349	17.0151	18.9552	8.85202	5.32407	7.15835	6.7371	19.1834	21.9205	7.3305	6.61032	14.4057	18.8967	20.0918	17.3169	9.74481	9.94217	4.76464	4.87651	16.0699	14.7124	0.560647	1.38774	11.6002	9.91252
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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