|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073704 ID=TCONS_00073704|Name=TCONS_00073704|organism=Clytia hemisphaerica|type=transcript|length=1632bp
TTTAGATctaaaaaatgaaactaaaccaataaaataaaataaaaaaacaa
aacaggaaAATACCAGTTGCCAGAAGTATGAGTGAAATACAAGATACGCC
CTGTCATGCCAACAGTGGTAATGATCAAACGCCCTTCAATGAAATACAAA
CACCGATGACTGAAGCACAAGCGCCCTCAAATAGAAATGAAACGCCATTG
GTTGAAAATCCAACGCCCTTGGCCGAAAATTCAACACTTTTCGTGGAAAA
TCCAACACCTTTGACAGGAAATCCAACACCACTAGCGGAAAATCCAACGC
CCTTGGCCGAAAATCCAACACCTTTCGTGGAAAATCCAACGCCTTTGACA
GGAAATTCAACACCACTAGCGGAAAATCCAACGCCCTTGGTGAATCACAT
AACAGTACCAATTGCAACATTTAAGAGTGGACCTTTGAAAtataagaaga
agaaaatgaaggatGTCGAACCTGAAAAGTTAGcGCCAACTGATTGTTGT
ATCGTTTACGAAGAAGGCTCATCAAAATTATACTTCAAACTTATCGATCA
AAACAAATTCTTAAAAACGGGCATCAAAAAACATACAACACTTGAATTTG
ATGACGTAACAGCTGCTGATCTTAAAGTGACGTCGAAATTCGGTTCCTGG
GATAGCATGTCGACTCGATTGTTAGTGGAAAATCGCACACCGTTAATTGC
TTGGACCGTAGAGAAATTAGCAGATGTTGAAGGCCTTTTGAATCGGAAAG
CACCTGTGAAGGAGACATTGCAAAATCagcaaaacgatggagagcaGACA
GCTTACCTGAGGCGAGAGCAAGAATCGTGTATGGTCAAAGCGACGTTTGA
CGTACAAGATTTGCAACAGTTGCGTGAAATTTTACACGcgctcaaaataa
gaaaattacgTGAACGGACAGCTATGTTGGAAAATCATGAACGTGGGTTA
CAGAAAGACGTACGCCCGCTTTCGAAGATACGGGAAGGTCTTCCAGAATG
GGTCAACTATATCCCAGCCAAATGGTATTCTTCCACCATTCGTCAAGTGT
TTGAGTATCTTATTATTATTTATACCCTGCTTACACTATCATGGGCTATA
TGGCAGTTGTATAAACATGTTGGTTTTATACGGAAGTTCTTACGGCCTGT
TTTGGAGATCCTGGAATTTTATCTTGAAATGCTTCGCGGATGGTTTCGTT
GGCTTGACCTTGTTACCGACGTTATTACGGATTATTGGTGGATGTATATG
AAACCTGTTATCTTGTTAGCGACTCCGCTTTATACGGCGCTTGCTATGCT
GTTCAAACCATTACGTAATGTTGCTAATGTTGTCACTATGGTTACTACAC
CAGTCATGTCTTGTTTGCGTCTCATGGCGTCCGCTTTAAGCCCGCTCGCT
CAGCCGGCTCTTATGTTTTGGAATACTGTGAGAcaagtttttgttaaatt
tgcaGACTCCTTATCCTTTATATGGGGTATTGTTGCACGCTGGTCTATAG
TACGTATTGTCGCTGATAAATTCCAGGGATTGGGTCTGCAAAATCTACTG
AATGAACTTTCGAATACTAATTTGGATCCATTGAAAGCACAAATGTTGGT
GATACAGAATTTATTGTTAAGAAGTTCCAAAC Run BLAST on NCBI protein sequence of TCONS_00073704-protein >TCONS_00073704-protein ID=TCONS_00073704-protein|Name=TCONS_00073704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=518bp
MSEIQDTPCHANSGNDQTPFNEIQTPMTEAQAPSNRNETPLVENPTPLAE
NSTLFVENPTPLTGNPTPLAENPTPLAENPTPFVENPTPLTGNSTPLAEN
PTPLVNHITVPIATFKSGPLKYKKKKMKDVEPEKLAPTDCCIVYEEGSSK
LYFKLIDQNKFLKTGIKKHTTLEFDDVTAADLKVTSKFGSWDSMSTRLLV
ENRTPLIAWTVEKLADVEGLLNRKAPVKETLQNQQNDGEQTAYLRREQES
CMVKATFDVQDLQQLREILHALKIRKLRERTAMLENHERGLQKDVRPLSK
IREGLPEWVNYIPAKWYSSTIRQVFEYLIIIYTLLTLSWAIWQLYKHVGF
IRKFLRPVLEILEFYLEMLRGWFRWLDLVTDVITDYWWMYMKPVILLATP
LYTALAMLFKPLRNVANVVTMVTTPVMSCLRLMASALSPLAQPALMFWNT
VRQVFVKFADSLSFIWGIVARWSIVRIVADKFQGLGLQNLLNELSNTNLD
PLKAQMLVIQNLLLRSSK Run BLAST on NCBI transcript from alignment at scaffold_97:213150..215589- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073704 ID=TCONS_00073704|Name=TCONS_00073704|organism=Clytia hemisphaerica|type=transcript|length=2440bp|location=Sequence derived from alignment at scaffold_97:213150..215589- (Clytia hemisphaerica)
TTTAGATCTAAAAAATGAAACTAAACCAATAAAATAAAATAAAAAAACAA
AACAGGAAAATACCAGTTGCCAGAAGTATGAGTGAAATACAAGATACGCC
CTGTCATGCCAACAGTGGTAATGATCAAACGCCCTTCAATGAAATACAAA
CACCGATGACTGAAGCACAAGCGCCCTCAAATAGAAATGAAACGCCATTG
GTTGAAAATCCAACGCCCTTGGCCGAAAATTCAACACTTTTCGTGGAAAA
TCCAACACCTTTGACAGGAAATCCAACACCACTAGCGGAAAATCCAACGC
CCTTGGCCGAAAATCCAACACCTTTCGTGGAAAATCCAACGCCTTTGACA
GGAAATTCAACACCACTAGCGGAAAATCCAACGCCCTTGGTGAATCACAT
AACAGTACCAATTGCAACATTTAAGAGTGGACCTTTGAAATATAAGAAGA
AGAAAATGAAGGATGTCGAACCTGAAAAGTTAGGTAAGTAGAATGTTAGA
GATTTTAGAATGTCTGATTCTTGACAAGGTTTCTCAAAAGACCAAACTTT
TGTTTGTTGTAAAAGTTTTGTAGCTGTAGTCGAGGGCAATCCGAAGGCTT
CCTTTTCTTATAGCTAGTCTATCTGGATTGCTCCACTAACCCTTAATCCT
TCCAATGAAAAATAACCAAATACACAAATCTACTATTAGCAAATTCATGT
AAAAAAGTCACGAAAAACGTTGAGTAAAGCTCTGATGTATGAGGTAATTT
GTCATGTATTAGCCAATCAGAGCTTTACTCGGCGGTTTTTCGTGACTTTT
TTATATGAATCTGCTAATAGTAAATTCGTGTGTTTGGAGTTCGATTTTAC
TTTCAATCCGGCGTTTGTGTGAAACCCACGTGGGTCACCCGATTTCTGTA
GAGAATAACTGGCTTCATACCCCACATAGGAGATCCAACTCTTACCCTTC
GAGCTTAAAATCTTTATTCATTTTCCTTCAGTGTTTACATTTTATGTAAG
GTTCCTTCTCCCGATAATTCTCTTATCCGCAACATTTATTGGGTTTTAAG
TATATATTGATATTAACTCTTTTGTCATTCATAATATAACAGCTAGTCAA
AAGGGAAAATCTGAGTGGACGGAATCTTAAAATTTAAAAACTATTCCTTA
ATGATCTTGGGTTTTAAAAATTCTAAATCATATGTGTTTAGTTGCCTGAA
GATTGTCACCAAAGTGGCATGAAACTGCCATCAGCAGAATAAAAATGTGT
CTTTTCTTCCTGACTAAATCACATTTTTTTATTGTTTTCAGCGCCAACTG
ATTGTTGTATCGTTTACGAAGAAGGCTCATCAAAATTATACTTCAAACTT
ATCGATCAAAACAAATTCTTAAAAACGGGCATCAAAAAACATACAACACT
TGAATTTGATGACGTAACAGCTGCTGATCTTAAAGTGACGTCGAAATTCG
GTTCCTGGGATAGCATGTCGACTCGATTGTTAGTGGAAAATCGCACACCG
TTAATTGCTTGGACCGTAGAGAAATTAGCAGATGTTGAAGGCCTTTTGAA
TCGGAAAGCACCTGTGAAGGAGACATTGCAAAATCAGCAAAACGATGGAG
AGCAGACAGCTTACCTGAGGCGAGAGCAAGAATCGTGTATGGTCAAAGCG
ACGTTTGACGTACAAGATTTGCAACAGTTGCGTGAAATTTTACACGCGCT
CAAAATAAGAAAATTACGTGAACGGACAGCTATGTTGGAAAATCATGAAC
GTGGGTTACAGAAAGACGTACGCCCGCTTTCGAAGATACGGGAAGGTCTT
CCAGAATGGGTCAACTATATCCCAGCCAAATGGTATTCTTCCACCATTCG
TCAAGTGTTTGAGTATCTTATTATTATTTATACCCTGCTTACACTATCAT
GGGCTATATGGCAGTTGTATAAACATGTTGGTTTTATACGGAAGTTCTTA
CGGCCTGTTTTGGAGATCCTGGAATTTTATCTTGAAATGCTTCGCGGATG
GTTTCGTTGGCTTGACCTTGTTACCGACGTTATTACGGATTATTGGTGGA
TGTATATGAAACCTGTTATCTTGTTAGCGACTCCGCTTTATACGGCGCTT
GCTATGCTGTTCAAACCATTACGTAATGTTGCTAATGTTGTCACTATGGT
TACTACACCAGTCATGTCTTGTTTGCGTCTCATGGCGTCCGCTTTAAGCC
CGCTCGCTCAGCCGGCTCTTATGTTTTGGAATACTGTGAGACAAGTTTTT
GTTAAATTTGCAGACTCCTTATCCTTTATATGGGGTATTGTTGCACGCTG
GTCTATAGTACGTATTGTCGCTGATAAATTCCAGGGATTGGGTCTGCAAA
ATCTACTGAATGAACTTTCGAATACTAATTTGGATCCATTGAAAGCACAA
ATGTTGGTGATACAGAATTTATTGTTAAGAAGTTCCAAAC Coding sequence (CDS) from alignment at scaffold_97:213150..215589- >TCONS_00073704 ID=TCONS_00073704|Name=TCONS_00073704|organism=Clytia hemisphaerica|type=CDS|length=3108bp|location=Sequence derived from alignment at scaffold_97:213150..215589- (Clytia hemisphaerica)
CGCCAACTGATTGTTGTATCGTTTACGAAGAAGGCTCATCAAAATTATAC
TTCAAACTTATCGATCAAAACAAATTCTTAAAAACGGGCATCAAAAAACA
TACAACACTTGAATTTGATGACGTAACAGCTGCTGATCTTAAAGTGACGT
CGAAATTCGGTTCCTGGGATAGCATGTCGACTCGATTGTTAGTGGAAAAT
CGCACACCGTTAATTGCTTGGACCGTAGAGAAATTAGCAGATGTTGAAGG
CCTTTTGAATCGGAAAGCACCTGTGAAGGAGACATTGCAAAATCAGCAAA
ACGATGGAGAGCAGACAGCTTACCTGAGGCGAGAGCAAGAATCGTGTATG
GTCAAAGCGACGTTTGACGTACAAGATTTGCAACAGTTGCGTGAAATTTT
ACACGCGCTCAAAATAAGAAAATTACGTGAACGGACAGCTATGTTGGAAA
ATCATGAACGTGGGTTACAGAAAGACGTACGCCCGCTTTCGAAGATACGG
GAAGGTCTTCCAGAATGGGTCAACTATATCCCAGCCAAATGGTATTCTTC
CACCATTCGTCAAGTGTTTGAGTATCTTATTATTATTTATACCCTGCTTA
CACTATCATGGGCTATATGGCAGTTGTATAAACATGTTGGTTTTATACGG
AAGTTCTTACGGCCTGTTTTGGAGATCCTGGAATTTTATCTTGAAATGCT
TCGCGGATGGTTTCGTTGGCTTGACCTTGTTACCGACGTTATTACGGATT
ATTGGTGGATGTATATGAAACCTGTTATCTTGTTAGCGACTCCGCTTTAT
ACGGCGCTTGCTATGCTGTTCAAACCATTACGTAATGTTGCTAATGTTGT
CACTATGGTTACTACACCAGTCATGTCTTGTTTGCGTCTCATGGCGTCCG
CTTTAAGCCCGCTCGCTCAGCCGGCTCTTATGTTTTGGAATACTGTGAGA
CAAGTTTTTGTTAAATTTGCAGACTCCTTATCCTTTATATGGGGTATTGT
TGCACGCTGGTCTATAGTACGTATTGTCGCTGATAAATTCCAGGGATTGG
GTCTGCAAAATCTACTGAATGAACTTTCGAATACTAATTTGGATCCATTG
AAAGCACAAATGTTGGTGATACAGAATTTATTGTTAAGAAGTTCCAAAAT
GAGTGAAATACAAGATACGCCCTGTCATGCCAACAGTGGTAATGATCAAA
CGCCCTTCAATGAAATACAAACACCGATGACTGAAGCACAAGCGCCCTCA
AATAGAAATGAAACGCCATTGGTTGAAAATCCAACGCCCTTGGCCGAAAA
TTCAACACTTTTCGTGGAAAATCCAACACCTTTGACAGGAAATCCAACAC
CACTAGCGGAAAATCCAACGCCCTTGGCCGAAAATCCAACACCTTTCGTG
GAAAATCCAACGCCTTTGACAGGAAATTCAACACCACTAGCGGAAAATCC
AACGCCCTTGGTGAATCACATAACAGTACCAATTGCAACATTTAAGAGTG
GACCTTTGAAATATAAGAAGAAGAAAATGAAGGATGTCGAACCTGAAAAG
TTAGCGCCAACTGATTGTTGTATCGTTTACGAAGAAGGCTCATCAAAATT
ATACTTCAAACTTATCGATCAAAACAAATTCTTAAAAACGGGCATCAAAA
AACATACAACACTTGAATTTGATGACGTAACAGCTGCTGATCTTAAAGTG
ACGTCGAAATTCGGTTCCTGGGATAGCATGTCGACTCGATTGTTAGTGGA
AAATCGCACACCGTTAATTGCTTGGACCGTAGAGAAATTAGCAGATGTTG
AAGGCCTTTTGAATCGGAAAGCACCTGTGAAGGAGACATTGCAAAATCAG
CAAAACGATGGAGAGCAGACAGCTTACCTGAGGCGAGAGCAAGAATCGTG
TATGGTCAAAGCGACGTTTGACGTACAAGATTTGCAACAGTTGCGTGAAA
TTTTACACGCGCTCAAAATAAGAAAATTACGTGAACGGACAGCTATGTTG
GAAAATCATGAACGTGGGTTACAGAAAGACGTACGCCCGCTTTCGAAGAT
ACGGGAAGGTCTTCCAGAATGGGTCAACTATATCCCAGCCAAATGGTATT
CTTCCACCATTCGTCAAGTGTTTGAGTATCTTATTATTATTTATACCCTG
CTTACACTATCATGGGCTATATGGCAGTTGTATAAACATGTTGGTTTTAT
ACGGAAGTTCTTACGGCCTGTTTTGGAGATCCTGGAATTTTATCTTGAAA
TGCTTCGCGGATGGTTTCGTTGGCTTGACCTTGTTACCGACGTTATTACG
GATTATTGGTGGATGTATATGAAACCTGTTATCTTGTTAGCGACTCCGCT
TTATACGGCGCTTGCTATGCTGTTCAAACCATTACGTAATGTTGCTAATG
TTGTCACTATGGTTACTACACCAGTCATGTCTTGTTTGCGTCTCATGGCG
TCCGCTTTAAGCCCGCTCGCTCAGCCGGCTCTTATGTTTTGGAATACTGT
GAGACAAGTTTTTGTTAAATTTGCAGACTCCTTATCCTTTATATGGGGTA
TTGTTGCACGCTGGTCTATAGTACGTATTGTCGCTGATAAATTCCAGGGA
TTGGGTCTGCAAAATCTACTGAATGAACTTTCGAATACTAATTTGGATCC
ATTGAAAGCACAAATGTTGGTGATACAGAATTTATTGTTAAGAAGTTCCA
AAATGAGTGAAATACAAGATACGCCCTGTCATGCCAACAGTGGTAATGAT
CAAACGCCCTTCAATGAAATACAAACACCGATGACTGAAGCACAAGCGCC
CTCAAATAGAAATGAAACGCCATTGGTTGAAAATCCAACGCCCTTGGCCG
AAAATTCAACACTTTTCGTGGAAAATCCAACACCTTTGACAGGAAATCCA
ACACCACTAGCGGAAAATCCAACGCCCTTGGCCGAAAATCCAACACCTTT
CGTGGAAAATCCAACGCCTTTGACAGGAAATTCAACACCACTAGCGGAAA
ATCCAACGCCCTTGGTGAATCACATAACAGTACCAATTGCAACATTTAAG
AGTGGACCTTTGAAATATAAGAAGAAGAAAATGAAGGATGTCGAACCTGA
AAAGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073704-exon-scaffold_97-1575043694:215107..215589 | TCONS_00073704-exon-scaffold_97-1575043694:215107..215589 | Clytia hemisphaerica | exon |
| TCONS_00073704-exon-scaffold_97-1575043694:213150..214298 | TCONS_00073704-exon-scaffold_97-1575043694:213150..214298 | Clytia hemisphaerica | exon |
| TCONS_00073704-exon-scaffold_97-1510915933:215107..215589 | TCONS_00073704-exon-scaffold_97-1510915933:215107..215589 | Clytia hemisphaerica | exon |
| TCONS_00073704-exon-scaffold_97-1510915933:213150..214298 | TCONS_00073704-exon-scaffold_97-1510915933:213150..214298 | Clytia hemisphaerica | exon |
| TCONS_00073704-exon-scaffold_97-1491911889:215107..215589 | TCONS_00073704-exon-scaffold_97-1491911889:215107..215589 | Clytia hemisphaerica | exon |
| TCONS_00073704-exon-scaffold_97-1491911889:213150..214298 | TCONS_00073704-exon-scaffold_97-1491911889:213150..214298 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:213150..215589 - |
Blast
The following BLAST results are available for this feature:
|
