TCONS_00073698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073698
Unique NameTCONS_00073698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2010

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073698 ID=TCONS_00073698|Name=TCONS_00073698|organism=Clytia hemisphaerica|type=transcript|length=2010bp
CAGCATTGAAATTATCGAGTTAAACTGTATTCCTCCAAGATTATACGAAT
AAAATTTAACGTGAAAAGGCTTAGGGCTTGGTAGTCTTCGACAAAACTTC
AAaacATCTACCAAGTATGAATCTGCCGTTACATCTCTGTCTCggctttt
tcatcattttgtgttACAGCCAACTTGGTTCGGTAGAAGGGACAACCAAA
AAAGTGATCATAGTATACAAGACAACTAAAAAGAGTTGGTATCAAAAACA
AGTGGATCGTTACTATAACTACCATAAATATAAACGAAAATTGGAGCAAG
TAAAACGAGGGCGCAAAAAATGGCCTAAAAAGAAGGGGCGTTGCGCCCAT
TCGCCCTggaaaattgatgacgtcaatcCGGTCATAGAAGAAGCAAAGAG
AGGTAATATGGTTTTGTTGCTGGTCTTTCGGCCTGGTACACGATACGGAA
TACATCAATTGGACTTCCTCAATGATAACACTCTATATTACCAaaagGTT
GGCTGGAAATTTACATCAATCGTTTTAGTGGAACGTGGATACAAACTTCC
TGAGTACTACGTCCAAAGATACAAACACGTTCGTTTCTACCAAGAACCGA
AATCACAGAATATCTTGAAGAAAATCTACGCCCGTTCTGAACATATGGTC
ATTTATGATGCATGTGGGCGTCAACAATACTCCATTGGAAGACCGTATAG
TTATACTAGATTCGATCTGATAAGATCTGCCATTCGTAATACATATTACC
ATTACGAGCAACCAAGATTTTGTGGTAAATGTTTACCGTATAAAGAGCCA
ACTTCAAAGACATTGACAAATGGTACAACATCTACTATTCGAACCAAGTT
ACCAATGAAACCTACAAAACAAGCTACAACGGTTGAAAGATTTGATGGAC
CTTTTACAAATAGACCTTTTGAATAATTATTTATTGCTTTATCATTAGAG
GACAAATGGGCTTATCCCAGGACCCACCCCCCTGaggcaaaatgaaaata
aaaatttactctctcaaagggtcgtgattttaaaaatttggataaaattg
agtgaaaatctacaaaatttttaagaaaagtctctctaagggtctcaaaa
acgtcgattttccCACTCTCGCtcattttgagaaaagtctctctaaggaa
gGGTCCCAAAAACACAAATTTCTAAGGGCCgatcgattttcgatttttgg
ctcggacatagcTGTCACCTCACAAACCCAGTACCCCCCCTTTATCCATA
TTGGCCTATCCATTTAATACTTTATCAATACAGTGAAGTGGTGAAACCTT
TTCGAGTCAAAACATTTCTCAAAATATGTGCTTACCCCTTTGGACACCCC
Ctgctcacagacccggtagggtctttttttcttttttgctttcaagtcag
aaaattcagtggaaaatttgcagtgaggattggtttatgtgattattttc
agcggggagaaaaattggaggatataattttccactgggggcgatatttt
ggctaatttttccagCGAGAGGGATCCcagtggatctgtgagaagggggc
gtctttagaaaaatggaaaaaattgtaaaaagacCATTGGAGACTTAGAG
GGTGGaccaaaatcagtcttttatcccctggaaattctaGAATAActtaa
ccccctggaaaattaaATTAGGTCCCTTGAAATACTTCTAAATACTTTTC
ATTTCCCGCTGGAAAAAATGACTTTGGTTAAACATCCTGGAAACTCCCCT
CAGGGGGTACCTCCCGGAAATTTTTGTCCAACCCACTGTACATGGATGAA
AAATGGAGTGGTCCAATACTTCAGTCAAAATACAATTTGTATTAGTTTTT
TAATGACGATTATGAAGATACCAAATACCTTATCTGTAAAAAAACTTTAC
CAGCTAAAAGTATCTTTTGATATCAACAAAGTataaaaaactaacaaaaa
gttaaaacaatgaGCTTCTAGACCAGGTTTTTTATAACGACTGTATATAT
GCTGTAATTG
Run BLAST on NCBI

transcript from alignment at scaffold_97:146896..152468-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073698 ID=TCONS_00073698|Name=TCONS_00073698|organism=Clytia hemisphaerica|type=transcript|length=5573bp|location=Sequence derived from alignment at scaffold_97:146896..152468- (Clytia hemisphaerica)
CAGCATTGAAATTATCGAGTTAAACTGTATTCCTCCAAGATTATACGAAT
AAAATTTAACGTGAAAAGGCTTAGGGCTTGGTAGTCTTCGACAAAACTTC
AAGTTAGTCTTCTTTCAATTGTACACGTTTTTTATAAGAACATCCAAGAT
TTTTGAAGCCTTAGGATGTTTTTAGCTTTTTGAGTTTTAAGCCTTGTTCT
TAAAATGTTCTTATTTTTCCCCAATTTTGTGGGTATTTTTGTCTATTTTT
CTTTTCGTGTGCCCGAAGCCTTAAAATGTTCTTAACTTGCTCTTAACATT
TCGGACATCGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAACG
TGTATGCTGTTTAGCCTCCTTGACCATATGTCCAGTTTCAAAATGACTTC
TAACTTCTGATATTTTTCTTTCAGAACATCTACCAAGTATGAATCTGCCG
TTACATCTCTGTCTCGGCTTTTTCATCATTTTGTGTTACAGCCAACTTGG
TTCGGTAGAAGGGACAACCAAAAAAGTGATCATAGTATACAAGACAACTA
AAAAGAGTTGGTATCAAAAACAAGTGGATCGTTACTATAACTACCATAAA
TATAAACGAAAATTGGAGCAAGTAAAACGAGGGCGCAAAAAATGGCCTAA
AAAGAAGGGGCGTTGCGCCCATTCGCCCTGGAAAATTGATGACGTCAATC
CGGTCATAGAAGAAGCAAAGAGAGGTATTTCATTGAATCTTTTTCAGGGC
TAAGACAAAATAATTGCCCAGCAGTGAGCTGGCACTTACATATTTTTTAG
ATGACTATGCTTCCACTGGCGTTTATCAAGTTTGAAGGGAATACACCTTT
TCAACCGTAGCCGCCAATTAGCGCGCGCGATTTTTTTTGTCCGTTTTACC
ATCCTAAACTTGTCTTAGTCTTTTTTTTCGCACCTATAGACAATAAGAAA
GGTGTAAAAGGATTGAATCGAGTTTATGATGGTAAAACGGATAAGAAAAT
GCCCGCGCGGCAATTCGTGGCTACGGCTGAAAAGGTGTATTGGATGCAAA
CAATTATGAGAAATCTAATTCTTAATTTTTATGACATCATGGAAAATGAC
GTCGTAATCATACAGTTTATATGTTCTATTTTTCGCGAAAATAAGGCAAC
TTTGCATTGGAGGATAAAGTCGTCTTTTGCGACGGCTGGAATGGCTATCT
AAATATATTATATTATAAAAAGTGGTGTCTTTAATCGAGCTAATAAAATA
CAGTTGACGAACTCTAATTCGATGTTCTTCTATTTGATACGCTATCCATT
TTTCGATGAAATTGAAAGTCACCGTCAACAAGAAACTCTCATAAACGACG
CTCCCTTGTATTCGATGAAAATCCAATTCCCCTTGAAAATCGAATTAGAG
AGCGTCAACTGTATAGTGAAAAATCGTCTTTGACAACGTCTGGGATCGAT
AGTTAATTGTTATTTGTTAATACACCTTTTCGACCGTAGCCACCAATTGC
CGCCTGGGCATTTTTTTGTCCGTTTTACCACCCTAAAACCGTCCTAGTTT
TTTTTTCGCACCTAAAGACAATAGAAAAAAGTGTATAAAAAGGATTTGAT
CGAGTTTAGGGTGATGGTAAATTAGATAATAAAATAGCACGCGCCTGACC
GCGCGACTACGGTTGAAAAGGTGTAAAGTCAATCAATTTTTTTCTTCTGA
CCTAGGTAATATGGTTTTGTTGCTGGTCTTTCGGCCTGGTACACGATACG
GAATACATCAATTGGACTTCCTCAATGATAACACTCTATATTACCAGTAA
GTCTTTTTTGAAATTCATTTCAGGGACCAGGGTAGACTAGCAAGCGTCTG
TCTTTTTCGTGGACACAGGAACGCGGGAATAGTACATATAAAGAGTTCTT
AAATAGAAATTGCCGCCGGAGAGTGGTTTGGAAAGACAGTATTGTATTCA
GTGAACATATAGACATAGAGCCTATTGAAAGCTTAATCTGCAGCGAAATA
CAACGACGTGGTTTACTAGTCTAGGACCAGGGTATCTGAGCATCTCACAC
ACTAAATGGCATTTCAGGACCCAAAAAAACTTTATATGAATTCTATGGGT
CTCTAGAATACCCCTGTGTAACAGACCCGCTGGAACTCAAGCCCCATTGG
AAAATTCGGCAAAATTTTCGTCCCCGATGCGAAAATGCCCTGAAATTTCA
GCCCCACTGGGAAATTGACTTTAATCTCATCCCCATTCGAAAATTCAATA
CCCAAAGATTGCACTCCAATCCCACTGGATTTTTTAACCTTGAAACAATA
GAATTTCTATCCCAATTGGGATTTCAATAGGAGTTTTTATCCCCACTGAA
GAAAAAGTTCCATCGAGGCTGTGAGAGAGGGGTGTTAAAATGTCAATCTA
ACGACTTCAGTCATTTTGACGTCATTCCTTCCTGGTAAACTCGAGCATAG
TCACTCCTCATGCTTATCTGATATTCCGATGGCGTATTGGCGGCCGCCCA
CGCTAAAGCTCTAAAGGAGTGGGCCAATATCACCATCGGAGACCTATAGT
AGTCATCGTTTGATGTACTGCGTCACAGTCGTGTCTAGCTGTCCTTACAC
TTTTTGCTTGACTATCGGTTGCACCCGACTGAATTTAGCATGAAAATCTC
TGCTGCCTAAGAAACCTTACAGAAAAATGGTAACCCAAAGGTTCCAGATG
TTAAAATTTTCCCGACCTTCAGAACTTTAGCGTGTCGGAAGAGAATTTCT
ACATCGAGTACCAGATAACCAAAGAGTTAAAGGTTGACAGATGTATTGTC
TTAATAACAGATGTTGTTTTCGTGGTTTGCTAGCATTGCAACCTACTACA
ATCCCCACCGTAATATTTGGCACAAAAGGGGAATTCCCTCAAATTTAAAA
ACTGCAAGTGATTTTTAAGTGCTTTAAAGTACGCTTGGAAAGTAGAGTTT
TAACTCTGGGTTTTAACATGAGACTTACCTTAGGATCTCAGGATCTTAAA
GCTCAACAATGTTCCAATAAGGCTGAGAAGCTACGATCATGGTCGTAGTA
TTTGAGAAAAAAGGGAAATTCACTGGGAAGTTTTGAAACCACAATCGATT
TGTAAGTGCTCTAAAGTAGGTTGGAAGGGTAGAGTTTCAACTCTGAGTTT
TAACATGAGACTTAAGACTTAGAATCTGAGGATCCAAAAGTTCAAAAATG
GTCCAATAAGGCTCATAATATAGCCTGGAAGTCTCTCAACCCGAGCCAAA
TTGAAATATCCAATTAAATTTAAGAGATGGCCCAAAATCGAAAAATTGGC
CCGAACTCCAAATTTCGAAAAACGAGGAAATAAGCTTAATCCTCAATAGA
TTTCGACCATGATTGTACTCAACCCCTCCCAAATCGAAAAATGCAATGAA
ACAAAGTGGAAGTACTGAAACTGCAATTCTTGCCTGATATTTAAATTCTG
AGAAACGTTAAAATACCCAAAAGTGCCAACAAATTTGGGCTTCTTTAGAA
AATTTGTTTAAAAATTACATCAAAAATGAATTTTCATCGAGACAGGGGTG
TTCTGAGATTCCTCATTCTCGTGTTTCGGATAATTAAAATTAGCGGATTT
GTCAAAAAACCGCGAAAATTTTTCCCGCGAAAATTTGTTCGACGAAAATT
TATCTCCCTAAATTTCTCTACAAAATTTGCCTCAAAAATGAATTTTCACC
GATACAATAGCAACTGAGATTCCTCAATCAACATTATCTGTTTTGTATAA
AGTCCATCAAAATTTTTTCTTCAGAAAGGTTGGCTGGAAATTTACATCAA
TCGTTTTAGTGGAACGTGGATACAAACTTCCTGAGTACTACGTCCAAAGA
TACAAACACGTTCGTTTCTACCAAGAACCGAAATCACAGAATATCTTGAA
GAAAATCTACGCCCGTTCTGAACATATGGTCATTTATGATGCATGTGGGC
GTCAACAATACTCCATTGGAAGACCGTATAGTTATACTAGATTCGATCTG
ATAAGGTATGTTGTATCATATCCCCTGAATCAAGTCTAATTTAGGTCAAT
TAGAACACTCCTGTCTCACAGCCCCAGTGAAACTTTTCCCACATCGCCGG
GTCTGTGATACGGATGCGTATGAGTAGTTCAGAAAAATTTGGACGAAATT
TGGTGAATTTTGGCAAGAAATTTTTGATCCCAAATCATCCCAAAACTCGC
CAAATTCTCCCTGCATTTTTGAGTTGCACATAATAAGCATTGAAACGAGC
GTGTTCAAATAAGCTCAAAATCTTCTTCTAATTTTAGATCTGCCATTCGT
AATACATATTACCATTACGAGCAACCAAGATTTTGTGGTAAATGTTTACC
GTATAAAGAGCCAACTTCAAAGACATTGACAAATGGTACAACATCTACTA
TTCGAACCAAGTTACCAATGAAACCTACAAAACAAGCTACAACGGTTGAA
AGATTTGATGGACCTTTTACAAATAGACCTTTTGAATAATTATTTATTGC
TTTATCATTAGAGGACAAATGGGCTTATCCCAGGACCCACCCCCCTGAGG
CAAAATGAAAATAAAAATTTACTCTCTCAAAGGGTCGTGATTTTAAAAAT
TTGGATAAAATTGAGTGAAAATCTACAAAATTTTTAAGAAAAGTCTCTCT
AAGGGTCTCAAAAACGTCGATTTTCCCACTCTCGCTCATTTTGAGAAAAG
TCTCTCTAAGGAAGGGTCCCAAAAACACAAATTTCTAAGGGCCGATCGAT
TTTCGATTTTTGGCTCGGACATAGCTGTCACCTCACAAACCCAGTACCCC
CCCTTTATCCATATTGGCCTATCCATTTAATACTTTATCAATACAGTGAA
GTGGTGAAACCTTTTCGAGTCAAAACATTTCTCAAAATATGTGCTTACCC
CTTTGGACACCCCCTGCTCACAGACCCGGTAGGGTCTTTTTTTCTTTTTT
GCTTTCAAGTCAGAAAATTCAGTGGAAAATTTGCAGTGAGGATTGGTTTA
TGTGATTATTTTCAGCGGGGAGAAAAATTGGAGGATATAATTTTCCACTG
GGGGCGATATTTTGGCTAATTTTTCCAGCGAGAGGGATCCCAGTGGATCT
GTGAGAAGGGGGCGTCTTTAGAAAAATGGAAAAAATTGTAAAAAGACCAT
TGGAGACTTAGAGGGTGGACCAAAATCAGTCTTTTATCCCCTGGAAATTC
TAGAATAACTTAACCCCCTGGAAAATTAAATTAGGTCCCTTGAAATACTT
CTAAATACTTTTCATTTCCCGCTGGAAAAAATGACTTTGGTTAAACATCC
TGGAAACTCCCCTCAGGGGGTACCTCCCGGAAATTTTTGTCCAACCCACT
GTACATGGATGAAAAATGGAGTGGTCCAATACTTCAGTCAAAATACAATT
TGTATTAGTTTTTTAATGACGATTATGAAGATACCAAATACCTTATCTGT
AAAAAAACTTTACCAGCTAAAAGTATCTTTTGATATCAACAAAGTATAAA
AAACTAACAAAAAGTTAAAACAATGAGCTTCTAGACCAGGTTTTTTATAA
CGACTGTATATATGCTGTAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045761XLOC_045761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073698-exon-scaffold_97-1575043694:152367..152468TCONS_00073698-exon-scaffold_97-1575043694:152367..152468Clytia hemisphaericaexon
TCONS_00073698-exon-scaffold_97-1575043694:151745..152044TCONS_00073698-exon-scaffold_97-1575043694:151745..152044Clytia hemisphaericaexon
TCONS_00073698-exon-scaffold_97-1575043694:150673..150763TCONS_00073698-exon-scaffold_97-1575043694:150673..150763Clytia hemisphaericaexon
TCONS_00073698-exon-scaffold_97-1575043694:148464..148694TCONS_00073698-exon-scaffold_97-1575043694:148464..148694Clytia hemisphaericaexon
TCONS_00073698-exon-scaffold_97-1575043694:146896..148181TCONS_00073698-exon-scaffold_97-1575043694:146896..148181Clytia hemisphaericaexon
TCONS_00073698-exon-scaffold_97-1510915933:152367..152468TCONS_00073698-exon-scaffold_97-1510915933:152367..152468Clytia hemisphaericaexon
TCONS_00073698-exon-scaffold_97-1510915933:151745..152044TCONS_00073698-exon-scaffold_97-1510915933:151745..152044Clytia hemisphaericaexon
TCONS_00073698-exon-scaffold_97-1510915933:150673..150763TCONS_00073698-exon-scaffold_97-1510915933:150673..150763Clytia hemisphaericaexon
TCONS_00073698-exon-scaffold_97-1510915933:148464..148694TCONS_00073698-exon-scaffold_97-1510915933:148464..148694Clytia hemisphaericaexon
TCONS_00073698-exon-scaffold_97-1510915933:146896..148181TCONS_00073698-exon-scaffold_97-1510915933:146896..148181Clytia hemisphaericaexon
TCONS_00073698-exon-scaffold_97-1491911889:152367..152468TCONS_00073698-exon-scaffold_97-1491911889:152367..152468Clytia hemisphaericaexon
TCONS_00073698-exon-scaffold_97-1491911889:151745..152044TCONS_00073698-exon-scaffold_97-1491911889:151745..152044Clytia hemisphaericaexon
TCONS_00073698-exon-scaffold_97-1491911889:150673..150763TCONS_00073698-exon-scaffold_97-1491911889:150673..150763Clytia hemisphaericaexon
TCONS_00073698-exon-scaffold_97-1491911889:148464..148694TCONS_00073698-exon-scaffold_97-1491911889:148464..148694Clytia hemisphaericaexon
TCONS_00073698-exon-scaffold_97-1491911889:146896..148181TCONS_00073698-exon-scaffold_97-1491911889:146896..148181Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:146896..152468 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000239303	0.00027666	0	0	0.000991185	0.00074136	0.066326	0.0374022	0	0	0	0	0.390687	0.439002	0.000903152	0	0.528101	1.31323	0	1.48179	0	0	1.3237	0.758073	0.134122	7.49715	0.0112701	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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