TCONS_00073697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073697
Unique NameTCONS_00073697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length995

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073697 ID=TCONS_00073697|Name=TCONS_00073697|organism=Clytia hemisphaerica|type=transcript|length=995bp
GGACCCCTGTAAATGGtgcgggatcaaaaaattttaaaaataggggggat
acctttatagggggggatgaaatattaatgggggggttcagacccTTCTG
CACACtatgaaattttacaaataCAACTTTTAGACCCAAacaaatttaat
gatttttctgaaacaaataaaacattGCTTCTTTTTTCAACTTAAACAAC
CGCCTCGCTTTAGGTTTGTTCATACTTTCATCAACCATTTCTCTTGTAAT
CTTCTCACCATCCAGAGTCCTAAAGTGCTGGTCCAAATCATACTGGTCAT
TAAGAAGTTCTTTCTTTCCTGAATCCCATACATATTTGAGTGTATATTCC
TTATCAAGGGATAACATTCTAGCATCATAATGGGCATCCGAGATTAAAAA
GTACCCTCCTTTCTTCAAATATTTGGAGGTTGATGTTGATACAATACCAG
CACAGGCAGAtatcaataaatcaaaactttcctCCACAACTCCTTGTAAA
TTATGTGTAAAATCACCACAAATGAATTTCAGTTTACAGTCATTGTCATA
TTCCTTGTTATCATTAAGCCATTGTAAAGTAGAATcatcttcaaaacaat
tttgtacTTTAGAATCAAAATCAACATAAATTACATCTTTGAAAGTAAGT
GATGCAGTGATATGACGATGGCATCCTGGGTAAAATACCTTTTCTGGTTG
GACCAGTTTTTGTACGGCAAGAAATAATGTTATATGCATTTCATCTCCAT
TTTTGTAGCTTTTCAAATAGGCTGACAAAGCAGTTGAACCTTTTTTTGGC
CTCTTGACAGACACTGAGATTGGTTTTGGAGGTTTAACTGTTTTCCTTTT
TGAACTTCTTGTTTCCATTTTAGATTATTACAGCTACGCGTTTATGATAA
TAACAAttgtataaaaatatttcataaatttgGTCCAATCCTGAGAACAA
TCTAACAAGAGTGGGATTTCGAAAATGACCTTATCATACGAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_97:122708..123767-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073697 ID=TCONS_00073697|Name=TCONS_00073697|organism=Clytia hemisphaerica|type=transcript|length=1060bp|location=Sequence derived from alignment at scaffold_97:122708..123767- (Clytia hemisphaerica)
GGACCCCTGTAAATGGTGCGGGATCAAAAAATTTTAAAAATAGGGGGGAT ACCTTTATAGGGGGGGATGAAATATTAATGGGGGGGTTCAGACCCTTCTG CACACTATGAAATTTTACAAATACAACTTTTAGACCCAAACAAATTTAAT GATTTTTCTGAAACAAATAAAACATTGCTTCTTTTTTCAACTTAAACAAC CGCCTCGCTTTAGGTTTGTTCATACTTTCATCAACCATTTCTCTTGTAAT CTTCTCACCATCCAGAGTCCTAAAGTGCTGGTCCAAATCATACTGGTCAT TAAGAAGTTCTTTCTTTCCTGAATCCCATACATATTTGAGTGTATATTCC TTATCAAGGGATAACATTCTAGCATCATAATGGGCATCCGAGATTAAAAA GTACCCTCCTTTCTTCAAATATTTGGAGGTTGATGTTGATACAATACCAG CACAGGCAGATATCAATAAATCAAAACTTTCCTCAACAACCNGGTTGATG TTGATACAATACCAGCACAGGCAGATATCAATAAATCAAAACTTTCCTCC ACAACTCCTTGTAAATTATGTGTAAAATCACCACAAATGAATTTCAGTTT ACAGTCATTGTCATATTCCTTGTTATCATTAAGCCATTGTAAAGTAGAAT CATCTTCAAAACAATTTTGTACTTTAGAATCAAAATCAACATAAATTACA TCTTTGAAAGTAAGTGATGCAGTGATATGACGATGGCATCCTGGGTAAAA TACCTTTTCTGGTTGGACCAGTTTTTGTACGGCAAGAAATAATGTTATAT GCATTTCATCTCCATTTTTGTAGCTTTTCAAATAGGCTGACAAAGCAGTT GAACCTTTTTTTGGCCTCTTGACAGACACTGAGATTGGTTTTGGAGGTTT AACTGTTTTCCTTTTTGAACTTCTTGTTTCCATTTTAGATTATTACAGCT ACGCGTTTATGATAATAACAATTGTATAAAAATATTTCATAAATTTGGTC CAATCCTGAGAACAATCTAACAAGAGTGGGATTTCGAAAATGACCTTATC ATACGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045760XLOC_045760Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073697-exon-scaffold_97-1575043694:123313..123767TCONS_00073697-exon-scaffold_97-1575043694:123313..123767Clytia hemisphaericaexon
TCONS_00073697-exon-scaffold_97-1575043694:122708..123247TCONS_00073697-exon-scaffold_97-1575043694:122708..123247Clytia hemisphaericaexon
TCONS_00073697-exon-scaffold_97-1510915933:123313..123767TCONS_00073697-exon-scaffold_97-1510915933:123313..123767Clytia hemisphaericaexon
TCONS_00073697-exon-scaffold_97-1510915933:122708..123247TCONS_00073697-exon-scaffold_97-1510915933:122708..123247Clytia hemisphaericaexon
TCONS_00073697-exon-scaffold_97-1491911889:123313..123767TCONS_00073697-exon-scaffold_97-1491911889:123313..123767Clytia hemisphaericaexon
TCONS_00073697-exon-scaffold_97-1491911889:122708..123247TCONS_00073697-exon-scaffold_97-1491911889:122708..123247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:122708..123767 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.46973e-08 3.7671e-07 1.37246e-08 0 7.65653 0.0127705 3.65594 4.03314 1.07757e-07 2.10977 1.48622 1.20638 1.58682e-06 0 5.17894e-09 0.00399723 0.000385256 0 0 6.68722e-10 3.21557e-07 0 1.08994e-09 0 1.63239 2.05442 2.04243 1.35408 5.23243e-08 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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