|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073678 ID=TCONS_00073678|Name=TCONS_00073678|organism=Clytia hemisphaerica|type=transcript|length=3608bpRun BLAST on NCBI protein sequence of TCONS_00073678-protein >TCONS_00073678-protein ID=TCONS_00073678-protein|Name=TCONS_00073678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1028bp MSHDVMDKHPGLSPQKPFHHQSDYDRLRDQCDAAMKEIETLGKKHADTLSRun BLAST on NCBI transcript from alignment at scaffold_97:831714..870784+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073678 ID=TCONS_00073678|Name=TCONS_00073678|organism=Clytia hemisphaerica|type=transcript|length=39071bp|location=Sequence derived from alignment at scaffold_97:831714..870784+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_97:831714..870784+ >TCONS_00073678 ID=TCONS_00073678|Name=TCONS_00073678|organism=Clytia hemisphaerica|type=CDS|length=27783bp|location=Sequence derived from alignment at scaffold_97:831714..870784+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073678 vs. Swiss-Prot (Human)
Match: DLG5 (Disks large homolog 5 OS=Homo sapiens GN=DLG5 PE=1 SV=4) HSP 1 Score: 174.481 bits (441), Expect = 8.723e-44 Identity = 174/688 (25.29%), Postives = 322/688 (46.80%), Query Frame = 3
Query: 288 QKPFHH-QSDYDRLRDQCDAAMKEIETLGKKHADTLSRFEKTSREMEYHKKQH-------TCLRNSLEELQSNYEQVIHDRNKLRQDYEEIVLLRE------AEMSSQHHHFHERTISSSSDRPMSPRGDPNGSRVDVAF-NFDEIR-------ADRDVLSTKCKTLQEEKSKLKLENE----------QLKNRCTSAIQGFEKALNDREKTDHEYKLVKQECDKIKDELQETTKLKNKMSHELKKLQEDKNSVLQEYKLVMSERATVLQEIQELQENLGQTKDKAQELNIDKEKAFREKEGFQREIQSVLADRDKAXXXXXXXXXXXXXTVKEREDFSRRCETQTRELEITKQETNAAKKERREALVYRDKILKECFDVKQNFEELSAGNLVAAETLKDKFDKLSKQLTDAWNRTEVAMARRNWAFNERDKVVKERENMRDRYSSLAKDKTLIEEQCKKLSLEMHSS---QKKFKELYRENESLRKTLLVKGSMLPSQDSAIDTEAPSYQICGVKLEKSAQD----EFGFKIGGGM-----LGDKSITVVEVTPGSLAENHLKVNDLIIQVNNMDMTNVDYETACESIF-GVDDLDMKILRHNKVGLK--NPLQRFDLKTGNDEKAIGLSIDSGFHIKSIEPGS-AAEEETLSIGDKILTINGQSIDDMPYQEAKKLLNTSHLSLTV 2207
++P+H DY+RL+ QC AM ++++L +H + L R E+ ++E +++ H T L++ ++ L+ Q++ +RN L+Q +E++ L E ++ +Q + SS ++ D +++V ++D +R A + ++ + L EE +L + E QL+++C +++ FE ++ K + K ++ E + ++ EL E + K + E +K +E++++V EYKL+MSER V+ E+ +LQ + + K + +K+ A E E ++ +V D +A KE E ++C+ +EL+ QE + AK R A RDKI+ E +D L L RR ERD+ V E K K + + K+L +M S + +F++L + S DSAIDT++ ++ V+ E+ +D GF + G+ GD I V +V GS+A+ L+VND ++++N++D+ N D + A +++ G ++M + R +G K PL +L D G+S+++G + ++ PGS AA+E +L++GD+I+ ING ++D+ E + LL + SLT+
Sbjct: 178 KRPYHRLNPDYERLKIQCVRAMSDLQSLQNQHTNALKRCEEVAKETDFYHTLHSRLLSDQTRLKDDVDMLRRENGQLLRERNLLQQSWEDMKRLHEEDQKEIGDLRAQQQQVLKHNGSSEI---LNKLYDTAMDKLEVVKKDYDALRKRYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQRDTAIQLQHQCALSLRRFEAIHHELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEKYREERDAVYSEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAANEEMEALRQIKDTVTMDAGRAN--------------KEVEILRKQCKALCQELKEALQEADVAKCRRDWAFQERDKIVAE----------------------RDSIRTLCDNL------------RR-----ERDRAVSELAEALRSLDDTRKQKNDVSRELKELKEQMESQLEKEARFRQLMAHS---------------SHDSAIDTDSMEWETEVVEFERETEDIDLKALGFDMAEGVNEPCFPGDCGIFVTKVDKGSIADGRLRVNDWLLRINDVDLINKDKKQAIKALLNGEGAINMVVRRRKSLGGKVVTPLH-INLSGQKDS---GISLENGVYAAAVLPGSPAAKEGSLAVGDRIVAINGIALDNKSLNECESLLRSCQDSLTL 790 HSP 2 Score: 93.5893 bits (231), Expect = 4.936e-19 Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 1
Query: 3367 EEPRRIIIEKGMEPLGITILEGDPNGIFVSHVTEGSYAAKHGLKYGDQLLEFNGINLRTAEKKQAETILTIQESTVTVL 3603
EEPR + ++KG EPLGI+I+ G+ GI+VS VT GS A + GL+YGDQLLEFNGINLR+A ++QA I+ Q T+T+L
Sbjct: 1346 EEPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITIL 1424 The following BLAST results are available for this feature:
BLAST of TCONS_00073678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.