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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073671 ID=TCONS_00073671|Name=TCONS_00073671|organism=Clytia hemisphaerica|type=transcript|length=1989bpRun BLAST on NCBI protein sequence of TCONS_00073671-protein >TCONS_00073671-protein ID=TCONS_00073671-protein|Name=TCONS_00073671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp LGAMTDDFFSIGIMHSRLYLIFNLGSGITLLRSPQTLDRNRKWHFAVAGRRun BLAST on NCBI transcript from alignment at scaffold_97:659901..668383+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073671 ID=TCONS_00073671|Name=TCONS_00073671|organism=Clytia hemisphaerica|type=transcript|length=8483bp|location=Sequence derived from alignment at scaffold_97:659901..668383+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_97:659901..668383+ >TCONS_00073671 ID=TCONS_00073671|Name=TCONS_00073671|organism=Clytia hemisphaerica|type=CDS|length=17523bp|location=Sequence derived from alignment at scaffold_97:659901..668383+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00073671 vs. Swiss-Prot (Human)
Match: EYS (Protein eyes shut homolog OS=Homo sapiens GN=EYS PE=1 SV=5) HSP 1 Score: 217.238 bits (552), Expect = 1.245e-58 Identity = 196/703 (27.88%), Postives = 314/703 (44.67%), Query Frame = 3
Query: 6 GAMTDDFFSIGIMHSRLYLIFNLGSGITLLRSPQTLDRNRKWHFAVAGRTGQNSYLYLDSQKKAETAXXXXXXXLDVFTPLYFGGVPNFSN--LPGQLSAYFYQGFDGLIADASIRTELGSFTPLLTLTNGQKTEGM-VGIPVEXXXXXXXXXXXXCDESINICANGGKCLNTGAGFTCECVAPYKGILCNDRDLSC-VDYNP---CSAGSTCQSDGITISCDCPLGKHGYFCDQDINVTV---------------------PYFTKSSYMSMVPPADLSIRTKTIISVRFKADTGNGLLFYTAHSMDSGSFGDFIAVSIWQRYIYVKFNLGTHTASMRSRQKITFH--KWHSLYIRRENKEAVMRLDGNYYVGVKASGPMSKLDVSSDFYLGGAPLLSSIQKAALKDVQSQHDFTGCVDSFKINGHHFELSSSIKSNNGRNIQEC-GTACSQNNCQNGALCSP-----------------------------LAQDLNTTAPEDVGYSCQCPLGLSGQLCDKEITTLTKGKFANTSYWYSRRSNF--SSTYYSHLKLNFQTSTSDGLLFMNARLKDVNSDQLMIGLDGGKLKIVFVL-DKI-VAFAYSDFLYDDGIAHKLVVSRIGNMIQFFVNGHTPKIMSNTQIKE-----SMTTDGHIYIGGLP--SDVRKLTKTHFMSGFNGCISEVEFNEEKSVIDF 1901
G DDF ++G+++ + +NLGSGI +RS + L+ + H G+ Q +L +D K + G L+VF+ Y GG ++ LP A F GF G I +RTE L G G VG C S+ C NGG C+ +G C C +KG C + +C +++P CS G+TC S +C CPLG G +C+Q + + V P F +S+ +S + A +R KT I ++F+ +G+LFY A + + S GDF+ +S+ + +++NLG T + + QK+T + WH + R E + LDG V KAS MS LD ++DFY+GG L+ + A+++ F GC+ IN +L + + G N+ +C GTAC N C+NG C+ L Q L + YSC C LG G+ C+ + T+ + KF SY N+ + ++ + LNF T+ ++GL+ ++ +D L IGL LKI L ++I V +Y++ + H +VV + +I+ ++N ++ + I ++ DG Y+GG V +T+ F + F G I +V F +E I+
Sbjct: 2471 GLNGDDFLAVGLLNGSVVYSYNLGSGIASIRS-EPLNLSLGVHTVHLGKFFQEGWLKVDDHKNKSIIAPGRLVGLNVFSQFYVGGYSEYTPDLLPN--GADFKNGFQGCIFTLQVRTEKDGHFRGLGNPEGHPNAGRSVG----------QCHASPC--SLMKCGNGGTCIESGTSVYCNCTTGWKGSFCTETVSTCDPEHDPPHHCSRGATCISLPHGYTCFCPLGTTGIYCEQALILIVILEKPKPAERKVKKEALSISDPSF-RSNELSWMSFASFHVRKKTHIQLQFQPLAADGILFYAAQHLKAQS-GDFLCISLVNSSVQLRYNLGDRTIILETLQKVTINGSTWHIIKAGRVGAEGYLDLDG-INVTEKASTKMSSLDTNTDFYIGGVSSLNLVNPMAIEN--EPVGFQGCIRQVIINNQELQL-TEFGAKGGSNVGDCDGTACGYNTCRNGGECTVNGTTFSCRCLPDWAGNTCNQSVSCLNNLCLHQSL-CIPDQSFSYSCLCTLGWVGRYCENK-TSFSTAKFMGNSYIKYIDPNYRMRNLQFTTISLNFSTTKTEGLIVWMGIAQNEENDFLAIGLHNQTLKIAVNLGERISVPMSYNNGTFCCNKWHHVVVIQNQTLIKAYINN---SLILSEDIDPHKNFVALNYDGICYLGGFEYGRKVNIVTQEIFKTNFVGKIKDVVFFQEPKNIEL 3147 HSP 2 Score: 137.887 bits (346), Expect = 2.472e-33 Identity = 138/564 (24.47%), Postives = 240/564 (42.55%), Query Frame = 3
Query: 480 NICANGGKCLNTGAGFTCECVAPYKGILCNDRDLSCVDYNPCSAGSTC-QSDGITISCDCPLGKHGYFCDQDINVTVPYFTK------SSYMSMVPPADLSIRTKTIISVRFKADTG---NGLLFYTAHSMDSGSFGDFIAVSIWQRYIYVKFNLGTHTASMRSRQKITFHKWHSLYIRRENKEAVMRLDGNYYVGVKASGPMSKLDVSSDFYLGGAPLLSSIQKAALKD-VQSQHDFTGCVDSFKI----NGHHFELSSSI-KSNNGRNIQEC-GTACSQNNCQNGALC-----------------SPLAQDLNTTAPE----------------DVGYSCQCPLGLSGQLCD--------------------KEITTLTKGKFANTSYWYSRRSNFSSTYYSHLKLNFQTSTSDGLLFMNAR-LKDVNSDQLMIGLDGGKLKIVFVL--DKIVAFAYSDFLYDDGIAHKLVVSRIGNMIQFFVNGHTPKIMSNTQIKESMTTDGHIYIGGLPS--DVRKLTKTHFMSGFNGCISEVEF-NEEKSVIDFASRSNSVGRNIGQC 1943
++C N G C++ CEC Y G LC + + NPC G+TC G I C CP G+ G C IN+T P F+ +S+++ +D+S + + + + N L+F+T + DF+AV + + +NLG+ AS+RS H++++ + +E +++D + + A G + L+V S FY+GG S L + ++ F GC+ + ++ +GH L + N GR++ +C + CS C NG C S + ++T PE GY+C CPLG +G C+ KE +++ F + + ++F +H++L FQ +DG+LF A+ LK + D L I L +++ + L I+ + H + R+G ++G ++T++ S+ T+ YIGG+ S V + + GF GCI +V N+E + +F ++ G N+G C
Sbjct: 2342 HLCRNNGTCISDNENLFCECPRLYSGKLC---QFASCENNPCGNGATCVPKSGTDIVCLCPYGRSGPLCTDAINITQPRFSGTDAFGYTSFLAYSRISDISFHYEFHLKFQLANNHSALQNNLIFFTGQKGHGLNGDDFLAVGLLNGSVVYSYNLGSGIASIRSEPLNLSLGVHTVHLGKFFQEGWLKVDDHKNKSIIAPGRLVGLNVFSQFYVGG---YSEYTPDLLPNGADFKNGFQGCIFTLQVRTEKDGHFRGLGNPEGHPNAGRSVGQCHASPCSLMKCGNGGTCIESGTSVYCNCTTGWKGSFCTETVSTCDPEHDPPHHCSRGATCISLPHGYTCFCPLGTTGIYCEQALILIVILEKPKPAERKVKKEALSISDPSFRSNELSWMSFASFHVRKKTHIQLQFQPLAADGILFYAAQHLKAQSGDFLCISLVNSSVQLRYNLGDRTIILETLQKVTINGSTWHIIKAGRVGAEGYLDLDGINVTEKASTKMS-SLDTNTDFYIGGVSSLNLVNPMAIENEPVGFQGCIRQVIINNQELQLTEFGAKG---GSNVGDC 2895 HSP 3 Score: 104.375 bits (259), Expect = 7.384e-23 Identity = 97/336 (28.87%), Postives = 145/336 (43.15%), Query Frame = 3
Query: 3 LGAMTDDFFSIGIMHSRLYLIFNLGSGITLLRSPQTLDRN-RKWHFAVAGRTGQNSYLYLDSQKKAETAXXXXXXXLDVFTPLYFGGVPNFSNLPGQLSAYFYQGFDGLIADASIRTELGSFTPLLTLTNGQKTEGMVGIPVEXXXXXXXXXXXXCDESI---NICANGGKCLNTGAGFTCECVAPYKGILCNDRDLSCVDYNPCSAGSTCQSD-GITISCDCPLGKHGYFCDQDINVTVPYFTKSSYMSMVPPADLSIRTK--TIISVRFKADTGNGLLFYTAHSMDSGSFGDFIAVSIWQRYIYVKFNLGTHTASMRSRQKITF--HKWHSLYI 983
L A + DF I +++S + L +NLG +L + Q + N WH AGR G YL LD E A S SSLD T Y GGV + + + GF G I I + T G K VG CD + N C NGG+C G F+C C+ + G CN + +SC++ N C S C D + SC C LG G +C+ + + F +SY+ + P + +R T IS+ F GL+ + + + + DF+A+ + + + + NLG + S TF +KWH + +
Sbjct: 2761 LKAQSGDFLCISLVNSSVQLRYNLGDRTIILETLQKVTINGSTWHIIKAGRVGAEGYLDLDGINVTEKA-STKMSSLDTNTDFYIGGVSSLNLVNPMAIENEPVGFQGCIRQVIINNQELQLTEF-----GAKGGSNVG---------------DCDGTACGYNTCRNGGECTVNGTTFSCRCLPDWAGNTCN-QSVSCLN-NLCLHQSLCIPDQSFSYSCLCTLGWVGRYCENKTSFSTAKFMGNSYIKYIDP-NYRMRNLQFTTISLNFSTTKTEGLIVWMGIAQNEEN--DFLAIGLHNQTLKIAVNLGERISVPMSYNNGTFCCNKWHHVVV 3070 The following BLAST results are available for this feature:
BLAST of TCONS_00073671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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