TCONS_00073666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073666
Unique NameTCONS_00073666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073666 ID=TCONS_00073666|Name=TCONS_00073666|organism=Clytia hemisphaerica|type=transcript|length=410bp
AATAAATGAGGAAATCTGTAAGTTGGAAAGGCAATGTTATGGGGAGGGCC
AACAAGCAAGACAATCAGCCTCACATGTTTTAGCTTTTATTGTACTACTT
ACGAGCTGGACAAACACTCGATCAGTTGGATCCGTGTGGTACAACTCTGG
GAGTTCGAGAATACCATAATCCCAGGGCTTTACATGATCAAATTAAGAAG
AGAACACATCGACTAAATAGGATGACATTTAAACTTGCAGCTCAGGTAAC
TTCCATATGAACTCAAAAATTTTGCTTATGTTACTAAGCATACAATTATA
CAACAGTTATCATTTTTTATACCTATTTTTCCTTCTTATTTTTGACCATG
CTAGGTGAAGTCTGAGAATTAGGTCTGTCTGAAATAAAATGGCTTTTTAT
GACAATAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_97:569645..570621+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073666 ID=TCONS_00073666|Name=TCONS_00073666|organism=Clytia hemisphaerica|type=transcript|length=977bp|location=Sequence derived from alignment at scaffold_97:569645..570621+ (Clytia hemisphaerica)
AATAAATGAGGAAATCTGTAAGTTGGAAAGGCAATGTTATGGGGAGGGCC AACAAGCAAGACAATCAGCCTCACATGTTTTAGCTTTTATTGTACTACTT ACGAGGTATCTACACTggatttacttttgtttttgttttttccctaCTGC ATCTGCTTCAAGTGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNCAAGATAAAGTCCATTTCTTCAGTATTAATCTGA TGTGCTTTGGatagaaagctctatttcatTTGTGAGTAtacaaaacaatt ttgaaaactctCATGGAAAAAGAAGCACCAAAAACTTTTGTAAATCAATG GTTTGTCTATTATTTCCAGAGGATATATACCTTAGATATTATTAATGATG ATTTGTTTGAATAGTATTATCACTACCAGgtgttaaaattcaaaaaaata attgggTTTCCTTTCCTTTTAGCTGGACAAACACTCGATCAGTTGGATCC GTGTGGTACAACTCTGGGAGTTCGAGAATACCATAATCCCAGGGCTTTAC ATGATCAAATTAAGAAGAGAACACATCGACTAAATAGGATGACATTTAAA CTTGCAGCTCAGGTAACTTCCATATGAACTCAAAAATTTTGCTTATGTTA CTAAGCATACAATTATACAACAGTTATCATTTTTTATACCTATTTTTCCT TCTTATTTTTGACCATGCTAGGTGAAGTCTGAGAATTAGGTCTGTCTGAA ATAAAATGGCTTTTTATGACAATAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045743XLOC_045743Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073666-exon-scaffold_97-1491911889:569645..569749TCONS_00073666-exon-scaffold_97-1491911889:569645..569749Clytia hemisphaericaexon
TCONS_00073666-exon-scaffold_97-1510915933:569645..569749TCONS_00073666-exon-scaffold_97-1510915933:569645..569749Clytia hemisphaericaexon
TCONS_00073666-exon-scaffold_97-1575043694:569645..569749TCONS_00073666-exon-scaffold_97-1575043694:569645..569749Clytia hemisphaericaexon
TCONS_00073666-exon-scaffold_97-1491911889:570317..570621TCONS_00073666-exon-scaffold_97-1491911889:570317..570621Clytia hemisphaericaexon
TCONS_00073666-exon-scaffold_97-1510915933:570317..570621TCONS_00073666-exon-scaffold_97-1510915933:570317..570621Clytia hemisphaericaexon
TCONS_00073666-exon-scaffold_97-1575043694:570317..570621TCONS_00073666-exon-scaffold_97-1575043694:570317..570621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:569645..570621 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63759 2.01203 0.866442 0.518431 21.859 18.2798 14.5118 21.494 14.2265 22.2476 15.4901 16.4165 19.6333 13.5889 11.6675 19.6398 11.8103 11.1489 39.3717 34.8934 11.121 11.8482 11.5504 9.70509 2.51704 3.36173 36.7999 31.0421 13.0638 12.9328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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