TCONS_00073665 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073665
Unique NameTCONS_00073665
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073665 ID=TCONS_00073665|Name=TCONS_00073665|organism=Clytia hemisphaerica|type=transcript|length=589bp
GTCGGAATGTTGCGATTTCATTGTTTGCCTATCGTTTTATTCATCTTACA
GCTTATTACTGCTGAAGATGATATCCATGACATCATTGAAAGATCCTcga
aatctgattggctaatcaACCCTAAACATGACGTCATTAGTGAAAATACA
GTATCTGATTGGTCAGATTCTACCAATGATGATGAAGAAATTGTGAATGG
TCAATGGTGGTCCTCCGGCAGACTTGTTCGCAAAGGCAAACGTTCAACAC
TGGAACGAAAAGATGTACAGCATGCCCAAAAGGACGAAAAGGAagatttt
gattggtcgaatgATGAGGAATACGTTCAAAGTCACAGCATCGAGAAACG
AAATTATTGGAGAAGAAGACGACGGAGGAGGTGGAGTAGATTTGCCAGAG
CTGGTGATGAGCCTCTAATGGAAAGCCATGACAACCAGCAAAACAATTCA
ACGTTGGAAACAGTGGAAGTAGAAGCAGGCGAAATGACCGGTCCCGAGAA
CATGGGTGAaagaaaaagtgacaaaattacCGGATCCGAAAATTCAACCT
TACAGAAAGAAGCCGCCTCTATAGGAGATGAAATTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00073665-protein

>TCONS_00073665-protein ID=TCONS_00073665-protein|Name=TCONS_00073665-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
VGMLRFHCLPIVLFILQLITAEDDIHDIIERSSKSDWLINPKHDVISENT
VSDWSDSTNDDEEIVNGQWWSSGRLVRKGKRSTLERKDVQHAQKDEKEDF
DWSNDEEYVQSHSIEKRNYWRRRRRRRWSRFARAGDEPLMESHDNQQNNS
TLETVEVEAGEMTGPENMGERKSDKITGSENSTLQKEAASIGDEI
Run BLAST on NCBI

transcript from alignment at scaffold_97:490062..496944+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073665 ID=TCONS_00073665|Name=TCONS_00073665|organism=Clytia hemisphaerica|type=transcript|length=6883bp|location=Sequence derived from alignment at scaffold_97:490062..496944+ (Clytia hemisphaerica)
GTCGGAATGTTGCGATTTCATTGTTTGCCTATCGTTTTATTCATCTTACA GCTTATTACTGCTGAAGATGATATCCATGACATCATTGAAAGATCCTcga aatctgattggctaatcaACCCTAAACATGACGTCATTAGTGAAAATACA GTATCTGATTGGTCAGATTCTACCAATGATGATGAAGAAATTGTGAATGG TCAATGGTGGTCCTCCGGCAGACTTGGTATTATTATtatctttcactttt tttcattttttatgtgaATTGAGAAGAAAGTACCTTTTTATGTAACTTTG ACATCTCTCCTTGGCaacttgagatttttttttatgacCTTGTACCTGGA GCCACTTGTACCAATCTTTTTTTTAGCGGCcgtagctcagtggtagagct cccctaccttcaggtggatagctatcgaaaagggggccttcgggtcgcct ccgactgtggtCTTACTTACATTGAAGAAAATTATACTTCAtattgcctg aagattgtcaccAAAGTGACATGAAACTGTCAGTACAATCAgggtcgaaa tatattgggaattttggttaattcctcgtttttagcaatttaaagttcgg gcgaaaaagtcgcttttgggcaaattgataaatttattcgaatatttcga tTCGGATgaggtttatagacttccaggctacattctgagccctattggac cattcttgcaACTTTTAGTTCTtcagatcctaagctcctaagtcttaagt ctacaatcatccactaaatatttgagacaaaggggatttcccggtgtaat tttgaacaccaaaattgatttttaagcgccttaaactacagttggaaagt agagttttaactctgagttttaacatgagacttaaagacttaggacctta ggatctcaggatttaaaagctcaaatttgctcgaatgaggcttggaatat agcctagaagccaccaaacccctataaaatcgaaatattcaatggaaaaa agtggaagtgctaaaatagcaattctcgcccgaactttaaattctgaaaa acgttgaaatacactaaaatctcaatatatttcgagggagattgtagcat taaaactctacccgtccaacctaatttagagcgctaccaaatcgtttgtg gttataagatttcgtgggaatttctcttttttctcaaatatgactttgat tgtagcAATATAAAAGTGACTTTTCTTCATGACTGACATCGCACTACTTA TATTTCGGGCACtgtaaaaactgaaaaattactTACTTCTATCTCTAAAT CTGTCTAGTTCGCAAAGGCAAACGTTCAACACTGGAACGAAAAGATGTAC AGCATGCCCAAAAGGACGAAAAGGAagattttgattggtcgaatgATGAG GAATACGTTCAAAGTCACAGCATCGAGAAACGAAATTATTGGAGAAGAAG ACGACGGAGGAGGTGGAGTAGATTTGCCAGAGCTGGTGATGGTGAGAATT Tttcacacaacgttgtttcaacgttcatctaacgttatatggacgttgtg aacgtaagataaacgtcgaaaaaacgttgtgtacCGGCTGGGTTTATGCT ATAATTGAAGAACATTTCTTGGAAAGGTTGAGCTCTTCGTTCgtgttttc atgaaaaaaaatttatcatgaAAATAAATCAGTCGTACTATATCAACATG AAatggaaactaattttctttaatttttgtgatcaatttttgaatttttt tgtgattctttcgatttttggtgattttgttgGGATTATTGGTGATTATT TTGAAAAGCGTACGTGATTTTTCCGAGTAATTTGACCTCTCGACGGAAAT AAGCCAACGTGAAAATCTTGAGCTTGTACTTTTGGCAGATTTgaaatcaa attgaaattaaatgacaaattactttaggcgtacaaactttcgcgaatta ccctgtcaagaattttcaaagacattacAACATTAACTTTCGCGGAAAAG GCCAAAATGCgggaaaattcgcgaaattttctactcgcgaaagtttttac GCCTAAAGTCAATCCCGAAATTTCAGTTCTCCACGGGAATAAGGCGggtt cgtggaggtcaaaattcttgcaacgttacaaataattttcagaagctcat tttgggctcaaacaaagcgtatgactaagtagaataggattcagtctagg cagatgttttttcactttgaaattttgcgtaattNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNaaaaaatttatgaaatttgatgacgtcatcacttttaaggcaaa aagctaaaatcctcaaaaaatgctgacatcatcaagattttgaaaatttt tgaaaatcttttgaaaatttgcatctgcctagactgaatcctaTTCTACT TAGTCATACGCTTTGTTTGAGCCCgaaatgagcttctgaaaatgatttgt aacgttgcaagcattttgaccccgccttaatcccctTGAGTTTGCGTAAA TCTATccaattaattaaaaaataatctaatAATTTAGAATATTCAAATTG TTACACCTGgtgttaatagattagtatcgCGAAAATTAATGGCCAAATAC AAATTTAACTGAAATTCTTTATGTTCTTATGTGAGTTTATTTTAGAAAAC TGGTCTCAGCTGGCACAAAAcgctgtttcaacgttaatctaacgttatat atatggacgttgtgaatgttgGATAAACGTTAAATCAATGTGGTGAGCCA GCTGGCgttcttatttttactttgAGTTGTTGATATCTCTTCTTCTTTTC TCCAGAGCCTCTAATGGAAAGCCATGACAACCAGCAAAACAATTCAACGT TGGAAACAGTGGAAGTAGAAGCAGGCGAAATGACCGGTCCCGAGAACATG GGTGAaagaaaaagtgacaaaattacCGGATCCGAAAATTCAACCTTACA GAAAGAAGCCGCCTCTATAGGTTACAACCAACCTACCGAAAATACTGATA CAAGAAAACACCAGTGGTATGGTGGTCATGAAGGGTGGAATGGTGGTACT TTGGGGCGGTGGCGTGAAAGCGGTGAGTTTTTtctacattaaaggaagaa attttggcgggaatttattttggcggaCTATGAGTTTCAAGGTTCGAAAT CAgtgtgaaaatgttaaaaaaatacgCCCATTTAGATAAATAGTGAAAAA TCGAAAGAAATATGAGAAAACTTAAGTTTggcagggatttaatttggcgg atggtggaaaagaaaaatttggcgggaagaaaatttggcggattttgccg aaatcttcctttaatgtacttATTCCGACTTTGAGACCCTTTCATTGCAT GATGAATCATGTTatctgttgaaaaaaaattacgagacAATAAGTTCCTT TCAGTATCACTGGgtgaaataagagatttccaatcctgggaatatcttga aaatatgatatttccatatacttttgtaaatatggaaatatgactttttt atatttccaaagttgtggaaataccatatttcatgatatttctaaatctg aaatatcatattttcaaaatatttccagcttttggaaatatgatatttcc aaaaattggaaatctattgatgcaaattacccgacttcacggtaagGAAC TTCCAAATTattacaaaatatattttgcaaAACGCCGACAATTGTTTTTA ATAATTCATGTATAGCTGAACAGAAGCTATTACCAAGAGGATTCCGAAAA AAAGTTGtgccaaaaatttaaaataatccTGACTCAAGACATCAGCAAAA GATTGATATTTAAGTTAAAAAGTccgtcgaaaaaaaaacacgtcaaaata ATGGTTTCAATAGCGTCACTAAAGAAAAACACCGATAATTTTATATCCAG TTCAGAAATCGAAGccaaattttgactgggatGGTAATTAATGATTCTAa gaaattcaattaaaaaaatttcaaaaaaaattgctgAAATCCCAGCATTT TATgaggtttttaaatttttgtcgaCATAATAACGACGtggtcaaaattt gataaaaatgatttgataaaaatgatatgttcgagaaagtcgtttttgag ctaattgataaatttattcgactatttcaattcgggaggggtttatttac ttccaggctatattctgagcctaaGTGGaacaattttgaacttttagatc ctgagatcctaaggtcttaagtctagcgttaaaactcaaagtaaaaatct acccttccaacctaatttagagcgcttccaaattgtttgtggttataaga tttcgtgggaatttcccttttttctcaaatatcatGACTTTGATTGTATA CATGACCAACAAAAAACGATGGGAACCGGTCGGTGTCACGCctaaggggc cgtccatatagtacgtacgcaaagattttccaaaattttgataccccctc ccccccttgtacgcagagaacaatagaaatgacgtcaCTCAAACAATAGA TGTatgcttttgctaaacccctctccccccttcactgcgtacgtactata tggatggcccctaaTAAGATAGTTTTTGAGCATTCCTTAAACTAACCTTA ACTAACAGTCCACAATTTAGTATTGTTGAAAATTGCCTCCTCATGTACCG TAGACAAGAGACAGATTTAGAATTACGGGAAATTCGAATCAAGTGCTGTC CTTGctttctaaaattaaaaccaaatTTCAGAGCTTGCGTTTTCTAAGAA AATGTGACCAGTGAAAGAataacagaatttgattggctatgttttcaccc GTCATTAGGAtatgagaaattcaaactctcaacccaaaccatgctattca tttcgccatcagtatataagaGAAGAAAtaatagcatggatctccaggct atttATACAATATAGGTCGACTAATGTTTTGTATCGGGTACTATGACTCA TCAGCGACGGAGAGTCTCCGTATTCTTATAAGGAGTATGGCTAAAAGGAA CACTCTCCGTCTGAATTTTCTAATCTTCCTTAGATTCGCCATTACTTAGT ATTGGACTTTCTGGGAATGATTCCTTTTATAATATATTGGTATTCCTcca tatcattttcattttcatccatCGACTTTTTGAACCAGGTACGACTTTTT GAACCCGGTAATAGAAAGACTGCAGTGGTATGAATAAAAGATAAACACTC TCTGTCGTGAATTTTGAATGCTCCTTAGATTCAGATCTGCCACTGCTCAG TAACGGCCTTTCTGCGTGTTATTAATTCAATGCGAATGCCAAGATCCAAT GTTTGTGATAATCATAGaattttcttaatctttattCTTGAAAGCACATT TTTATGATGAAAAGCTTATAACCCATTGTATCGATATTTCTAGAAGAAAT TCAAAAGGCTGCAGATAACGAAAATGTAGATATTAACCTTGAAAGCGATC AAACACACGGAACCGGAAACGAAGAAATGAGCTTCGAAACACACGAtatc gaaaatgaagaaataagtGATAAAACACACGGTACCGAAAAACGAGGTGG GAATTGTTGGAGGAGACGATGGTGTTGGAGAAAGATGGCAAGAATAATGA TTATAAATGACGGTAAATTAACTCTTTCTAATCCTCTTACGCGATCATCA ATTCACAATTTGTGATAtaaatgatgtaatgttttatacggaagcaacCA ATAAAGACTGGTCTAGTTAAATAAGCCTATATTCACAAGTctaggacaca cggctaatGGCATTTTATGTGCAGCCCGACTTTTAACCCTCGGACCTTTA GCGGgactaaaaaaatttttgcgatttttatgaccgttattgggactaat tagaccaaattttgatctttcaaggagcAAAAAGTTAATATTATATAaag ttaaaatattcttatttttccgacccttagttggactaaaatttaatttt ctggttaaataccccccccccggctgtaacccttttcaactttcaacttt actttttatACTGCTTATCAaccaaaaatatctaaaaaacaaTGGACGAA Tatccaaaaaaagttgaagccttttgatgttcttaactttttgagtttta agcctaaaaattttcttaacatgttattattttcacgattttatgAGTgt gttttcaaggtttttgtccattttcttaagaaatcgggtgttttagagcc tgcaaacccttaaaatgttcttaacttgtttttaatattttggccattga agccttacgttcttgtatagtttgttctgcCTTTACAAGTTGTTTGGTAA TTTATCATGTCAAGAATATACTTATCAaccaaaaatatctaaaaaactaT GGACGAATatccaaaaaaattgaagtctttggatgttcttaactttttga gttttaagccttaaaatgttcttaacatgctcttattttaACCAGTTTAT gaatatctttgtttattttcatcttaagaaatcaggtgttttagagcaTG CCaacccttaaaatgttcttaacttgttcttaatattttggccatcgaag cctatgttcttgtatagtttgttctggtataaaaaacgtgtacaagtCTA ACTTCCTGTTATTTTTAGGAGATGAAATTTGAG

Coding sequence (CDS) from alignment at scaffold_97:490062..496944+

>TCONS_00073665 ID=TCONS_00073665|Name=TCONS_00073665|organism=Clytia hemisphaerica|type=CDS|length=2352bp|location=Sequence derived from alignment at scaffold_97:490062..496944+ (Clytia hemisphaerica)
GTCGGAATGTTGCGATTTCATTGTTTGCCTATCGTTTTATTCATCTTACA
GCTTATTACTGCTGAAGATGATATCCATGACATCATTGAAAGATCCTcga
aatctgattggctaatcaACCCTAAACATGACGTCATTAGTGAAAATACA
GTATCTGATTGGTCAGATTCTACCAATGATGATGAAGAAATTGTGAATGG
TCAATGGTGGTCCTCCGGCAGACTTGTTCGCAAAGGCAAACGTTCAACAC
TGGAACGAAAAGATGTACAGCATGCCCAAAAGGACGAAAAGGAagatttt
gattggtcgaatgATGAGGAATACGTTCAAAGTCACAGCATCGAGAAACG
AAATTATTGGAGAAGAAGACGACGGAGGAGGTGGAGTAGATTTGCCAGAG
CTGGTGATGAGCCTCTAATGGAAAGCCATGACAACCAGCAAAACAATTCA
ACGTTGGAAACAGTGGAAGTAGAAGCAGGCGAAATGACCGGTCCCGAGAA
CATGGGTGAaagaaaaagtgacaaaattacCGGATCCGAAAATTCAACCT
TACAGAAAGAAGCCGCCTCTATAGGAGATGAAATTTGAGTCGGAATGTTG
CGATTTCATTGTTTGCCTATCGTTTTATTCATCTTACAGCTTATTACTGC
TGAAGATGATATCCATGACATCATTGAAAGATCCTcgaaatctgattggc
taatcaACCCTAAACATGACGTCATTAGTGAAAATACAGTATCTGATTGG
TCAGATTCTACCAATGATGATGAAGAAATTGTGAATGGTCAATGGTGGTC
CTCCGGCAGACTTGTTCGCAAAGGCAAACGTTCAACACTGGAACGAAAAG
ATGTACAGCATGCCCAAAAGGACGAAAAGGAagattttgattggtcgaat
gATGAGGAATACGTTCAAAGTCACAGCATCGAGAAACGAAATTATTGGAG
AAGAAGACGACGGAGGAGGTGGAGTAGATTTGCCAGAGCTGGTGATGAGC
CTCTAATGGAAAGCCATGACAACCAGCAAAACAATTCAACGTTGGAAACA
GTGGAAGTAGAAGCAGGCGAAATGACCGGTCCCGAGAACATGGGTGAaag
aaaaagtgacaaaattacCGGATCCGAAAATTCAACCTTACAGAAAGAAG
CCGCCTCTATAGGAGATGAAATTTGAGTCGGAATGTTGCGATTTCATTGT
TTGCCTATCGTTTTATTCATCTTACAGCTTATTACTGCTGAAGATGATAT
CCATGACATCATTGAAAGATCCTcgaaatctgattggctaatcaACCCTA
AACATGACGTCATTAGTGAAAATACAGTATCTGATTGGTCAGATTCTACC
AATGATGATGAAGAAATTGTGAATGGTCAATGGTGGTCCTCCGGCAGACT
TGTTCGCAAAGGCAAACGTTCAACACTGGAACGAAAAGATGTACAGCATG
CCCAAAAGGACGAAAAGGAagattttgattggtcgaatgATGAGGAATAC
GTTCAAAGTCACAGCATCGAGAAACGAAATTATTGGAGAAGAAGACGACG
GAGGAGGTGGAGTAGATTTGCCAGAGCTGGTGATGAGCCTCTAATGGAAA
GCCATGACAACCAGCAAAACAATTCAACGTTGGAAACAGTGGAAGTAGAA
GCAGGCGAAATGACCGGTCCCGAGAACATGGGTGAaagaaaaagtgacaa
aattacCGGATCCGAAAATTCAACCTTACAGAAAGAAGCCGCCTCTATAG
GAGATGAAATTTGAGTCGGAATGTTGCGATTTCATTGTTTGCCTATCGTT
TTATTCATCTTACAGCTTATTACTGCTGAAGATGATATCCATGACATCAT
TGAAAGATCCTcgaaatctgattggctaatcaACCCTAAACATGACGTCA
TTAGTGAAAATACAGTATCTGATTGGTCAGATTCTACCAATGATGATGAA
GAAATTGTGAATGGTCAATGGTGGTCCTCCGGCAGACTTGTTCGCAAAGG
CAAACGTTCAACACTGGAACGAAAAGATGTACAGCATGCCCAAAAGGACG
AAAAGGAagattttgattggtcgaatgATGAGGAATACGTTCAAAGTCAC
AGCATCGAGAAACGAAATTATTGGAGAAGAAGACGACGGAGGAGGTGGAG
TAGATTTGCCAGAGCTGGTGATGAGCCTCTAATGGAAAGCCATGACAACC
AGCAAAACAATTCAACGTTGGAAACAGTGGAAGTAGAAGCAGGCGAAATG
ACCGGTCCCGAGAACATGGGTGAaagaaaaagtgacaaaattacCGGATC
CGAAAATTCAACCTTACAGAAAGAAGCCGCCTCTATAGGAGATGAAATTT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045742XLOC_045742Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073665-exon-scaffold_97-1491911889:490062..490287TCONS_00073665-exon-scaffold_97-1491911889:490062..490287Clytia hemisphaericaexon
TCONS_00073665-exon-scaffold_97-1510915933:490062..490287TCONS_00073665-exon-scaffold_97-1510915933:490062..490287Clytia hemisphaericaexon
TCONS_00073665-exon-scaffold_97-1575043694:490062..490287TCONS_00073665-exon-scaffold_97-1575043694:490062..490287Clytia hemisphaericaexon
TCONS_00073665-exon-scaffold_97-1491911889:491370..491552TCONS_00073665-exon-scaffold_97-1491911889:491370..491552Clytia hemisphaericaexon
TCONS_00073665-exon-scaffold_97-1510915933:491370..491552TCONS_00073665-exon-scaffold_97-1510915933:491370..491552Clytia hemisphaericaexon
TCONS_00073665-exon-scaffold_97-1575043694:491370..491552TCONS_00073665-exon-scaffold_97-1575043694:491370..491552Clytia hemisphaericaexon
TCONS_00073665-exon-scaffold_97-1491911889:493117..493281TCONS_00073665-exon-scaffold_97-1491911889:493117..493281Clytia hemisphaericaexon
TCONS_00073665-exon-scaffold_97-1510915933:493117..493281TCONS_00073665-exon-scaffold_97-1510915933:493117..493281Clytia hemisphaericaexon
TCONS_00073665-exon-scaffold_97-1575043694:493117..493281TCONS_00073665-exon-scaffold_97-1575043694:493117..493281Clytia hemisphaericaexon
TCONS_00073665-exon-scaffold_97-1491911889:496930..496944TCONS_00073665-exon-scaffold_97-1491911889:496930..496944Clytia hemisphaericaexon
TCONS_00073665-exon-scaffold_97-1510915933:496930..496944TCONS_00073665-exon-scaffold_97-1510915933:496930..496944Clytia hemisphaericaexon
TCONS_00073665-exon-scaffold_97-1575043694:496930..496944TCONS_00073665-exon-scaffold_97-1575043694:496930..496944Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073665-proteinTCONS_00073665-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:490062..496944 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.186725 0.546259 0.10571 0.206841 0.125905 0 14.6439 16.9683 32.0206 29.6252 24.9714 29.5972 0.49674 0.322418 1.27234 0.739602 0.280347 0.359184 1.58794 1.03854 0.0902681 0 0.107048 0 0 0.178922 0.128018 0 0.103625 0.211155
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top