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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073664 ID=TCONS_00073664|Name=TCONS_00073664|organism=Clytia hemisphaerica|type=transcript|length=1341bp ATTAAATTATTCATTGTCATTTATTGGCAAAATACActtcaattaacaaa ataataagacaATCACAATAAATGAAGTCCGCCAACTTATTTCTTTGATG tgagaatttcatactcaatgTGATGCAGATGACATGAAAGGATATAAAAA GAGACCAACATGAAAGCAACATTCTTGCTACAGAGTGGTTTTAGAGCAAA TACAAAATTATACAGGTCTTTATTTTCCTCTCGCGGCGATCTAAAATCTG Gtctgcaatatttttagagtactccaataggtactccattggagtactcc atggagctactgcatgttttacaacgacccCATTAAAATACATATAATTA TTGTAagtgtatttttttcttatcattgttttgatgctagAGTTTCTAAT GATTCAGCATGAAATTCTAATTattaaaaaggtctatttaaccCCTTTTT TATCTAAAGGTAAAATGGATACAgtaaaagcaataaaaattgaagataaC AGTGTTGGTTATGAAGAAAATGGATCGTTTGCTGGTAAAGATATTACTCC TGGTATTAAAATCGAAAGCAAAGAAGAAAATCTTGAATTAACATTACAGC AAGAAAACCTTAATGAGCTGGATCTCATGAAGGTTGAGTTCGATTATGGC TTTTtgagaaatgaaaatttagaacCATCAAAAACAGAAGATCCACGTAA GAATAAAACTCTTAATGAACTAGACTCAATGAAAGTTGAATTTGATTACG GGTTTTTGAGAAATAAAGAGAACTTTTTACTTGACTCAAAATCTTTAGAC ACTAAGATTGAATACAAAATGTACCAAAACCCAGAAATAAAACCATGTGT TGTGCTAATAACAAAGTGTAAAATCCCTCTGACTGCAACCACGAAAAGCA AATTCAAGGAAGGCAAAATCTGTAAGGGTATATTTAAGATCCGTAAGGGT ATTAAAAAATTCAAGTGTGAGAAGTGCGATTCAAGTTTTGGTTCTAACAG TCATCTTAAGCGGCATTTGAAATCTGTTGTCCATACTACAGTCAAGGCTT TTGATTGCTCAGAATGTGAAAAGACTTTCAAATCAAAAGATGCATTACAG CGACACATAAAAATATCTCACAGATCGATAAAACAAGACAGTAAAGAATT GAAATGCTTGAAAATTCTTGCAACAAACGCAAGTCTTTCATGGAGATGAT GAATCTGATTGAAACTCTACTACATACAGTCACAAAGACTACTGCACATG GTCATAAACTCTACTGCACACAGTCATAAACTTACAATACAGTCATGAAC TCTACTGAATTCTACTGTACATGGTCATAAACTCTACTGCA Run BLAST on NCBI protein sequence of TCONS_00073664-protein >TCONS_00073664-protein ID=TCONS_00073664-protein|Name=TCONS_00073664-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MLEFLMIQHEILIIKKVYLTPFLSKGKMDTVKAIKIEDNSVGYEENGSFA GKDITPGIKIESKEENLELTLQQENLNELDLMKVEFDYGFLRNENLEPSK TEDPRKNKTLNELDSMKVEFDYGFLRNKENFLLDSKSLDTKIEYKMYQNP EIKPCVVLITKCKIPLTATTKSKFKEGKICKGIFKIRKGIKKFKCEKCDS SFGSNSHLKRHLKSVVHTTVKAFDCSECEKTFKSKDALQRHIKISHRSIK QDSKELKCLKILATNASLSWR Run BLAST on NCBI transcript from alignment at scaffold_97:480228..481863+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073664 ID=TCONS_00073664|Name=TCONS_00073664|organism=Clytia hemisphaerica|type=transcript|length=1636bp|location=Sequence derived from alignment at scaffold_97:480228..481863+ (Clytia hemisphaerica) ATTAAATTATTCATTGTCATTTATTGGCAAAATACActtcaattaacaaa
ataataagacaATCACAATAAATGAAGTCCGCCAACTTATTTCTTTGATG
tgagaatttcatactcaatgTGATGCAGATGACATGAAAGGATATAAAAA
GAGACCAACATGAAAGCAACATTCTTGCTACAGAGTGGTTTTAGAGCAAA
TACAAAATTATACAGGTCTTTATTTTCCTCTCGCGGCGATCTAAAATCTG
Gtctgcaatatttttagagtactccaataggtactccattggagtactcc
atggagctactgcatgttttacaacgacccCATTAAAATACATATAATTA
TTGTAagtgtatttttttcttatcattgttttgatgctagAGTTTCTAAT
GATTCAGCATGAAATTCTAATTattaaaaaggtctatttaaccCCTTTTT
TATCTAAAGGTAAAATGGATACAgtaaaagcaataaaaattgaagataaC
AGTGTTGGTTATGAAGAAAATGGATCGTTTGCTGGTAAAGATATTACTCC
TGGTATTAAAATCGAAAGCAAAGAAGAAAATCTTGAATTAACATTACAGC
AAGAAAACCTTAATGAGCTGGATCTCATGAAGGTTGAGTTCGATTATGGC
TTTTtgagaaatgaaaatttagaacCATCAAAAACAGAAGATCCACGTAA
GAATAAAACTCTTAATGAACTAGACTCAATGAAAGTTGAATTTGATTACG
GGTTTTTGAGAAATAAAGAGAACTTTTTACTTGACTCAAAATCTTTAGAC
ACTAAGATTGAATACAAAATGTACCAAAACCCAGAAATAAAACCATGTGT
TGTGCTAATAACAAAGTGTAAAATCCCTCTGACTGCAACCACGAAAAGCA
AATTCAAGGAAGGCAAAATCTGTAAGGGTATATTTAAGATCCGTAAGGGT
ATTAAAAAATTCAAGTGTGAGAAGTGCGATTCAAGTTTTGGTTCTAACAG
TCATCTTAAGCGGCATTTGAAATCTGTTGTCCATACTACAGTCAAGGCTT
TTGATTGCTCAGAATGTGAAAAGACTTTCAAATCAAAAGATGCATTACAG
CGACACATAAAAATATCTCACAGATCGATAAAACAAGACAGTAAAGAATT
GAAATGCTTGAAAATTCTTGCAACAAACGCAAGTCTTTCATGGAGATGAT
GAATCTGATTGAAACTCTACTACATACAGTCACAAAGACTACTGCACATA
GTCATAAACTTACAATACAATCATGAACCCTGCTGAATTCTACTGTACAT
GGTCATAAACTCTACTGCACACAGTCATAAACTTACAATACAGCACCGAC
ATGAACTCTACTGAATACTACTATGGTCATAAACTCTACTGCACACAGTC
ATAAACTTACAGTACAGTCATGAACTCTACTGAATTCTACATACAGTCAC
AAAGACTATTGTACAATGTCATAAACTCTACTGTACATAGTCATAAACTT
ACAATACAGCACAGTCATGAACTCTACTGAATTCTACTGTACATGGTCAT
AAACTCTACTGCACACAGTCATAAACTTACAATACAGTCATGAACTCTAC
TGAATTCTACTGTACATGGTCATAAACTCTACTGCA Coding sequence (CDS) from alignment at scaffold_97:480228..481863+ >TCONS_00073664 ID=TCONS_00073664|Name=TCONS_00073664|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_97:480228..481863+ (Clytia hemisphaerica) atgctagAGTTTCTAATGATTCAGCATGAAATTCTAATTattaaaaaggt ctatttaaccCCTTTTTTATCTAAAGGTAAAATGGATACAgtaaaagcaa taaaaattgaagataaCAGTGTTGGTTATGAAGAAAATGGATCGTTTGCT GGTAAAGATATTACTCCTGGTATTAAAATCGAAAGCAAAGAAGAAAATCT TGAATTAACATTACAGCAAGAAAACCTTAATGAGCTGGATCTCATGAAGG TTGAGTTCGATTATGGCTTTTtgagaaatgaaaatttagaacCATCAAAA ACAGAAGATCCACGTAAGAATAAAACTCTTAATGAACTAGACTCAATGAA AGTTGAATTTGATTACGGGTTTTTGAGAAATAAAGAGAACTTTTTACTTG ACTCAAAATCTTTAGACACTAAGATTGAATACAAAATGTACCAAAACCCA GAAATAAAACCATGTGTTGTGCTAATAACAAAGTGTAAAATCCCTCTGAC TGCAACCACGAAAAGCAAATTCAAGGAAGGCAAAATCTGTAAGGGTATAT TTAAGATCCGTAAGGGTATTAAAAAATTCAAGTGTGAGAAGTGCGATTCA AGTTTTGGTTCTAACAGTCATCTTAAGCGGCATTTGAAATCTGTTGTCCA TACTACAGTCAAGGCTTTTGATTGCTCAGAATGTGAAAAGACTTTCAAAT CAAAAGATGCATTACAGCGACACATAAAAATATCTCACAGATCGATAAAA CAAGACAGTAAAGAATTGAAATGCTTGAAAATTCTTGCAACAAACGCAAG TCTTTCATGGAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073664-exon-scaffold_97-1491911889:480228..481474 | TCONS_00073664-exon-scaffold_97-1491911889:480228..481474 | Clytia hemisphaerica | exon |
TCONS_00073664-exon-scaffold_97-1510915933:480228..481474 | TCONS_00073664-exon-scaffold_97-1510915933:480228..481474 | Clytia hemisphaerica | exon |
TCONS_00073664-exon-scaffold_97-1575043694:480228..481474 | TCONS_00073664-exon-scaffold_97-1575043694:480228..481474 | Clytia hemisphaerica | exon |
TCONS_00073664-exon-scaffold_97-1491911889:481770..481863 | TCONS_00073664-exon-scaffold_97-1491911889:481770..481863 | Clytia hemisphaerica | exon |
TCONS_00073664-exon-scaffold_97-1510915933:481770..481863 | TCONS_00073664-exon-scaffold_97-1510915933:481770..481863 | Clytia hemisphaerica | exon |
TCONS_00073664-exon-scaffold_97-1575043694:481770..481863 | TCONS_00073664-exon-scaffold_97-1575043694:481770..481863 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_97 | supercontig | scaffold_97:480228..481863 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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