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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073661 ID=TCONS_00073661|Name=TCONS_00073661|organism=Clytia hemisphaerica|type=transcript|length=3264bpRun BLAST on NCBI transcript from alignment at scaffold_97:446563..474055+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073661 ID=TCONS_00073661|Name=TCONS_00073661|organism=Clytia hemisphaerica|type=transcript|length=27493bp|location=Sequence derived from alignment at scaffold_97:446563..474055+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00073661 vs. Swiss-Prot (Human)
Match: TBD2B (TBC1 domain family member 2B OS=Homo sapiens GN=TBC1D2B PE=1 SV=2) HSP 1 Score: 297.745 bits (761), Expect = 8.851e-85 Identity = 171/406 (42.12%), Postives = 252/406 (62.07%), Query Frame = 3
Query: 198 VLEKLIDEAINEKADSTTEKK--SPTEIRFADKYGFYDQIEKSDENALESLADHFESLSGDKELGSL------EVSHGVKWENYLVAQGTAPLQKTEELKALVRSGIPHEFRARVWGDLVRLRSDHERTIAGQGYYANLLKEKKGAYSPSAKQIELDLLRTLPNNKYYDTLESEGISKLRRILTAYSWHNPAVGYCQGLNRLGAIALLYLDEETAFWCLVAITEHLMPIDYYSRTLLGAQIDQKVFRDLLDEKCPKLSAHLVSLQFDISLVSFNWFLTVFVDLFPIELTLRVWDTFLFEGSKVLFRYALSVXXXXXXXXXXXXDPGPMFNFFRNLPKKKFNIQKICYIAFNTMNPFSRRNVESKRKFYRPILQAQLDEFEIMREEYKEKREDSISIHDEEPISDDE 1391
V+ +L+++A+ ++ E+ P + D YGF E +E E L +L +L +L EVS GVKWENY + + + ELK L+R+GIPHE R++VW V + + G++ LL++ +P++KQIELDLLRTLPNNK+Y SEGI KLR +L A+SW NP +GYCQGLNRL A+ALLYL++E AFWCLV I E MP DYY++TLLG+Q+DQ+VFRDL+ EK P+L H + D +L++FNWFL VFVD ++ ++WD+FL+EG KV+FR+AL++FK EEE L+ +D +F + R + + +K+ I+F +NPF R + ++R ++ ++ +L E E +RE++ RE S E +SD+E
Sbjct: 564 VIAQLLEDALQVESQEQPEQAFVKPHLVSEYDIYGFRTVPEDDEE---EKLVAKVRAL----DLKTLYLTENQEVSTGVKWENYFASTVNREMMCSPELKNLIRAGIPHEHRSKVWKWCVDRHTRKFKDNTEPGHFQTLLQKALEKQNPASKQIELDLLRTLPNNKHYSCPTSEGIQKLRNVLLAFSWRNPDIGYCQGLNRLVAVALLYLEQEDAFWCLVTIVEVFMPRDYYTKTLLGSQVDQRVFRDLMSEKLPRLHGHFEQYKVDYTLITFNWFLVVFVDSVVSDILFKIWDSFLYEGPKVIFRFALALFKYKEEEILKLQDSMSIFKYLRYFTRTILDARKLISISFGDLNPFPLRQIRNRRAYHLEKVRLELTELEAIREDF--LRERDTSPDKGELVSDEE 960 The following BLAST results are available for this feature:
BLAST of TCONS_00073661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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