Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073657 ID=TCONS_00073657|Name=TCONS_00073657|organism=Clytia hemisphaerica|type=transcript|length=2841bpRun BLAST on NCBI protein sequence of TCONS_00073657-protein >TCONS_00073657-protein ID=TCONS_00073657-protein|Name=TCONS_00073657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp MHFSIPETVQASEENGSKFWNFHIHVNGVFHCKLRYSQLDKFYEQLKNDFRun BLAST on NCBI transcript from alignment at scaffold_97:361162..381811+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073657 ID=TCONS_00073657|Name=TCONS_00073657|organism=Clytia hemisphaerica|type=transcript|length=20650bp|location=Sequence derived from alignment at scaffold_97:361162..381811+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_97:361162..381811+ >TCONS_00073657 ID=TCONS_00073657|Name=TCONS_00073657|organism=Clytia hemisphaerica|type=CDS|length=17667bp|location=Sequence derived from alignment at scaffold_97:361162..381811+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073657 vs. Swiss-Prot (Human)
Match: SNX17 (Sorting nexin-17 OS=Homo sapiens GN=SNX17 PE=1 SV=1) HSP 1 Score: 371.318 bits (952), Expect = 1.694e-117 Identity = 176/396 (44.44%), Postives = 275/396 (69.44%), Query Frame = 3 Query: 225 MHFSIPET-VQASEENGSKFWNFHIHVNGVFHCKLRYSQLDKFYEQLKNDFPGRIQSRLFPGKKLFSLSPDQLEERRDMLEKFIQHISQDPVIGVSDQFNDFFVKAQQAGLDIPSENVSLDVFLMNGNKVTLEISTTDQTDDVLEAAMTKIGLQEKFYYYFALFFVRKEDNGGGIRIVRKLQDFESPYLSLKAV-TKPHRIIIRKNYWSPSYDDDLLEDRIAMNLLYVQITDDLDRGWMLCSDEQKKRMKKLQNQGSRKDVLRLARDFKFYGFLHYSPCTSDYPDPDSSALIASGDRELNIRVSKENDTKVMEGRFKVQRIRSWRLTS---LPGDDDAS------KEKLQFAFEYLFGKDELRWVTIESDQAIMMSMALQGIVDEILREKRGQGIR 1379 MHFSIPET ++ + GS + ++IHVNGV HC++RYSQL +EQL+ ++ + FP KKLFSL+P ++E+RR+ LEK++Q + QDP++G S+ FN F +AQQ +P+E VSL+V L NG KV + + T+DQT+DVLEA K+ L + YF+LF VR++++ G VRKLQ+FE PY+S+ ++ ++ ++I++RK+YW +YDDD++E+R+ +NLLY Q D++RGW+L + EQ +++K LQ + S+K+ LRLA+ + YG+L + C +D+P+ D ++++G+ EL++++ + ++ EG F+V R+R WR+TS LP +S + +L+ AFEYL KD L+WVTI S QAIMMS+ LQ +VDE++ +K G IR Sbjct: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLP-AFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKED-GAFSFVRKLQEFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQL-RLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSIR 393 The following BLAST results are available for this feature:
BLAST of TCONS_00073657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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