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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073641 ID=TCONS_00073641|Name=TCONS_00073641|organism=Clytia hemisphaerica|type=transcript|length=540bp
CACTCTTATGATAGCTGTGGAAGATCCTCGTCCTCTAGCGCGAACATACA
ATGGCTTGATGGTTAGATTCTCCATTTTAACCGAATCACATCGAATCTCA
ATTTGCATCATCAATGTGATATTACTTGCATCGTCGTTACCAAGGATTGC
TATTGGATATTTCAAATAAAGTATAGATGAGTCTTGATAAGTGCCTGGAT
GTACAATAATCTTGGCGTAGGGTGACGCTTTATCTAGCGCCGCTTTGATC
GTTTGGTATTGTTTACCAAGGCCCACATGGAAAGTCCTTGGTGATTTCCG
GCGTGGGAATAAAAACGGCACCACACAAGACGCAGCCACTTGATTTCGGA
GCCATAACCGTGATAATTGAAATCGTTTCCTATAGAGATCTTTCCACGTG
CTTTTTAATGCTGGCGATGATGATGATTCGTTTGGCCAATTCGGATGCTT
CCACCGTTTGGTGCGCTCTTGGAGAAGATAAATCTGTTTCCAACGTGTGG
TATCTAAGCTGTCGACAAGTGCACGCCAGTCCTTGCATAC Run BLAST on NCBI transcript from alignment at scaffold_97:55059..57884+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073641 ID=TCONS_00073641|Name=TCONS_00073641|organism=Clytia hemisphaerica|type=transcript|length=2826bp|location=Sequence derived from alignment at scaffold_97:55059..57884+ (Clytia hemisphaerica)
CACTCTTATGATAGCTGTGGAAGATCCTCGTCCTCTAGCGCGAACATACA
ATGGCTTGATGGTTAGATTCTCCATTTTAACCGAATCACATCGAATCTCA
ATTTGCATCATCAATGTGATATTACTTGCATCGTCGATGCCTTTTGAAGG
AAGCGAAAAGAACCATGAGATATCTGGATATTCCGATGTCGGATTGGNAG
AAGGAAGCAAAAAGAACCATGAGATATCTGGATATTCCGATgtcggattg
gcggccgcccacgctaaagttctaaaggagcgggccaatttcccatcgga
gagaaatgatagtcggcctttgatgtaccgcatccccagtcgggttcaac
tacctTTGTGCGTaaagtcaaaaatatttcagttggacccggcaatcccc
gaaaacgagggctgggttgtTAGACCTctcgctgcaaaatccttgacgcg
gtaTTGCAAAATTCCGTTATCTTAACCTTCCacatgttgaaaattttctc
gatcttcagagctttagcgtgtcggataaAAATTTCACCATCAGGGTACC
AGATAAGACCATGAGATACAATTAGcactctaattcgaactcgaaaatGA
AGTCTAGTGTTCGAACCACATAGCGATTCGAATtgtaacaagcaacatgc
tgaacggacctacctggtgatcaaaatcagataaaaataggacaaatagc
aagagagtaagaaagtgtaatgagcagcttgaatatNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtctt
tttccctaaaaatgacataagggaatttacccaaataagaaaaaccgatt
tttacggccaaaaaaaattttccgaaaaaaactgtttcagtcacttttta
gagaaccttgctctCCATCTtactgccaaaaatcaggaaaaactaatgaa
gcaattttgcaccaagtccaaaaaaccttatttttaggtagtttttggcc
caaatttgccccccatatttttttttcaaaaataaggctctgtcactttt
taggcattgctattttgtatcattgtgcaaaaattaaaaaaaactaatga
gccaatcccgagaaaagctgctaacaggaaaatgttaaaagggaatttcc
ccaaaaaacgaaaatccgtactttacgacgaaaaaaaaaatttccgagaa
aaattacttcagccacattttagcgtaacttgcactctatctttctgcca
aaaatcaggaaaaactaatgaacaattttgcacaaagtccaaaaaacctt
atttttaggtagtttttggcccaaatttgccccccaaatttttttttcaa
aaatcgggctccgtcacttttcaggcattgctattttgtatcattgtgca
aaaaattaaaaaaaaccaatgagccaatcccgagaaaagcttgtaacaga
cgaacggacaacggtcaaattaaaggacctcccggtaggtccaaaaagag
taTTTACGAGGGTTTGACAGGAATTGAAAATTAGTTCAAATTGCGGACAG
AAAATAGAATTAGAAGTTAGCGAGAGACTATGTTACAAACGTCATTTCGT
TCGATTCAGACCTACGAAAAAATATTTCGTCTATCCAAATCAAAACTTTA
CAGACCATTCGATAAAGGCCTAcactttaaaactttttttgtatCATCGA
TTATATACAGTATGTAAAAAATTCATTCCCTACAAGTCACTTTAAACGGA
TTTTTTCCTGAACAGTtaactctctataattcgaacctactacaattcga
atctttctataattcgaactagaatattggtcccctcagctagaaAATAG
TATAAAATACTAAACTCTTTCTTTAATATGAAGAAAATCCCTGTTTctcc
gcagtcggaggcgacccgaaggctcctcttttgatAACTATTTACcagaa
ggtaggggagggcgccactctttcttcACTTACGCTTGgttcttctctta
attgctgagcatcaagcagagaggcatcaagtaccattttgagaatcttt
ggtatgacccagctggGGGTTGACCCATAAACCTTGCGAACcatagccgg
atgctctaccgcTGCACCACAGaacgacttagctattttaaaTCAAAGAC
GACctggtatgaaatatgtgtcttaTATGAAACGGGACcacttgtgtaaa
aataaaaccttaagtACCTTACTTACCAAGGATTGCTATTGGATATTTCA
AATAAAGTATAGATGAGTCTTGATAAGTGCCTGGATGTACAATAATCTTG
GCGTAGGGTGACGCTTTATCTAGCGCCGCTTTGATCGTTTGGTATTGTTT
ACCAAGGCCCACATGGAAAGTCCTTGGTGATTTCCGGCGTGGGAATAAAA
ACGGCACCACACAAGACGCAGCCACTTGATTTCGGAGCCATAACCGTGAT
AATTGAAATCGTTTCCTATAGAGATCTTTCCACGTGCTTTTTAATGCTGG
CGATGATGATGATTCGTTTGGCCAATTCGGATGCTTCCACCGTTTGGTGC
GCTCTTGGAGAAGATAAATCTGTTTCCAACGTGTGGTATCTAAGCTGTCG
ACAAGTGCACGCCAGTCCTTGCATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073641-exon-scaffold_97-1491911889:55059..55194 | TCONS_00073641-exon-scaffold_97-1491911889:55059..55194 | Clytia hemisphaerica | exon |
| TCONS_00073641-exon-scaffold_97-1510915933:55059..55194 | TCONS_00073641-exon-scaffold_97-1510915933:55059..55194 | Clytia hemisphaerica | exon |
| TCONS_00073641-exon-scaffold_97-1575043694:55059..55194 | TCONS_00073641-exon-scaffold_97-1575043694:55059..55194 | Clytia hemisphaerica | exon |
| TCONS_00073641-exon-scaffold_97-1491911889:57481..57884 | TCONS_00073641-exon-scaffold_97-1491911889:57481..57884 | Clytia hemisphaerica | exon |
| TCONS_00073641-exon-scaffold_97-1510915933:57481..57884 | TCONS_00073641-exon-scaffold_97-1510915933:57481..57884 | Clytia hemisphaerica | exon |
| TCONS_00073641-exon-scaffold_97-1575043694:57481..57884 | TCONS_00073641-exon-scaffold_97-1575043694:57481..57884 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:55059..57884 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012334 | Pectin_lyas_fold |
| IPR011050 | Pectin_lyase_fold/virulence |
Blast
BLAST of TCONS_00073641 vs. Swiss-Prot (Human)
Match: FBX10 (F-box only protein 10 OS=Homo sapiens GN=FBXO10 PE=1 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 3.690e-27 Identity = 53/166 (31.93%), Postives = 93/166 (56.02%), Query Frame = -1
Query: 46 VCKDWRALVDSLDTTRWKQIYLLQERTKRWKHPNWPNESSSSPALKSTWKDLYRKRFQLSRLWLRNQVAASCVVPF-LFPRRKSPRTFHVGLGKQYQTIKAALDKASPYAKIIVHPGTYQDSSILYLKYPIAILGNDDASNITLMMQIEIRCDSVKMENLTIKPLY 540
VC+ W L+ SLD+TRW+Q+ L +HPNWPN+ P +W++ +++ + S+ W +N + + F LF RR+ RT VG G+++ ++ +AL AS Y +I++ PG Y++ + LK P+ I+G + L+ I+ C + ++ NL P +
Sbjct: 29 VCRAWYELILSLDSTRWRQLCL---GCTECRHPNWPNQPDVEP---ESWREAFKQHYLASKTWTKNALDLESSICFSLFRRRRERRTLSVGPGREFDSLGSALAMASLYDRIVLFPGVYEEQGEIILKVPVEIVGQGKLGEVALLASIDQHCSTTRLCNLVFTPAW 188
The following BLAST results are available for this feature:
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