TCONS_00073640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073640
Unique NameTCONS_00073640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length835

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073640 ID=TCONS_00073640|Name=TCONS_00073640|organism=Clytia hemisphaerica|type=transcript|length=835bp
AGCGGATATGACAAGAAAAATTATATACAATATACACAGCAATCGTATCG
ATATGCaaagaaataaacaaagaaactttgttTCGATATTCTAACTCACT
GTGGTATCATCAAAAAGGCAAAAGCCATTAGCAGGGATCAGGATATATTC
ATACACTTTGAATCTCATGCTCTTCATATTGGAGGCTACTTAATTATGCC
AACAGCAAGGAGGCCAAAACTTTTGAGGCTTTGGGCGGATAAGATGCTGT
TAGTTTCAAAAGTCCTGTCCACCTTTTCCCGATGAGATATTTAATTAGTC
GAGCAATAATATAAGCATAAGGTCCAAAGGACATGAATTGTTCTGTTTCT
CTGCTAGTTTCTTTTACTTAATTGATGAACTTCAGAGAGAATAGAATata
gaaacaaatttttttcgTTCCTTTCTTCACATTTCGATACAATtgctttt
gaaaactttgattttagtagaatctttcaaaaaaatcattcaataatGTA
TACCACATGGTACGACGTGGTTTCTGATTTTGCCGTGCAGATTCGACGGT
ATCTTTGTTGGATGACGACCCAGACTGGGCATTAGTGTCATTAGAGGGAG
AGTCACTCAAATGGTCAGGTTGTGTCTTTTCGATATAACTAATTGATGCT
ACGTGCTCTatgtgggcagatttggttTGCTCCACATCACAGACTGATGA
tacgtcctccatgtgggcagatttggttTGCTCCACATCACAGACTAGTG
CtacgtcctccatgtgggcagatttggttTGCTGGGCATCACAGACTGGT
GCTACGTTCTTcatgtgggcagatttggttTGCTC
Run BLAST on NCBI

protein sequence of TCONS_00073640-protein

>TCONS_00073640-protein ID=TCONS_00073640-protein|Name=TCONS_00073640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
EQTKSAHMKNVAPVCDAQQTKSAHMEDVALVCDVEQTKSAHMEDVSSVCD
VEQTKSAHIEHVASISYIEKTQPDHLSDSPSNDTNAQSGSSSNKDTVESA
RQNQKPRRTMWYTLLNDFFERFY
Run BLAST on NCBI

transcript from alignment at scaffold_96:138579..139413

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073640 ID=TCONS_00073640|Name=TCONS_00073640|organism=Clytia hemisphaerica|type=transcript|length=835bp|location=Sequence derived from alignment at scaffold_96:138579..139413 (Clytia hemisphaerica)
GAGCAaaccaaatctgcccacatgAAGAACGTAGCACCAGTCTGTGATGC
CCAGCAaaccaaatctgcccacatggaggacgtaGCACTAGTCTGTGATG
TGGAGCAaaccaaatctgcccacatggaggacgtaTCATCAGTCTGTGAT
GTGGAGCAaaccaaatctgcccacatAGAGCACGTAGCATCAATTAGTTA
TATCGAAAAGACACAACCTGACCATTTGAGTGACTCTCCCTCTAATGACA
CTAATGCCCAGTCTGGGTCGTCATCCAACAAAGATACCGTCGAATCTGCA
CGGCAAAATCAGAAACCACGTCGTACCATGTGGTATACattattgaatga
tttttttgaaagattctactaaaatcaaagttttcaaaagcaATTGTATC
GAAATGTGAAGAAAGGAAcgaaaaaaatttgtttctatATTCTATTCTCT
CTGAAGTTCATCAATTAAGTAAAAGAAACTAGCAGAGAAACAGAACAATT
CATGTCCTTTGGACCTTATGCTTATATTATTGCTCGACTAATTAAATATC
TCATCGGGAAAAGGTGGACAGGACTTTTGAAACTAACAGCATCTTATCCG
CCCAAAGCCTCAAAAGTTTTGGCCTCCTTGCTGTTGGCATAATTAAGTAG
CCTCCAATATGAAGAGCATGAGATTCAAAGTGTATGAATATATCCTGATC
CCTGCTAATGGCTTTTGCCTTTTTGATGATACCACAGTGAGTTAGAATAT
CGAaacaaagtttctttgtttatttctttGCATATCGATACGATTGCTGT
GTATATTGTATATAATTTTTCTTGTCATATCCGCT

Coding sequence (CDS) from alignment at scaffold_96:138579..139413

>TCONS_00073640 ID=TCONS_00073640|Name=TCONS_00073640|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_96:138579..139413 (Clytia hemisphaerica)
GAGCAaaccaaatctgcccacatgAAGAACGTAGCACCAGTCTGTGATGC
CCAGCAaaccaaatctgcccacatggaggacgtaGCACTAGTCTGTGATG
TGGAGCAaaccaaatctgcccacatggaggacgtaTCATCAGTCTGTGAT
GTGGAGCAaaccaaatctgcccacatAGAGCACGTAGCATCAATTAGTTA
TATCGAAAAGACACAACCTGACCATTTGAGTGACTCTCCCTCTAATGACA
CTAATGCCCAGTCTGGGTCGTCATCCAACAAAGATACCGTCGAATCTGCA
CGGCAAAATCAGAAACCACGTCGTACCATGTGGTATACattattgaatga
tttttttgaaagattctactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045730XLOC_045730Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073640-exon-scaffold_96-1491911889:138579..139413TCONS_00073640-exon-scaffold_96-1491911889:138579..139413Clytia hemisphaericaexon
TCONS_00073640-exon-scaffold_96-1510915933:138579..139413TCONS_00073640-exon-scaffold_96-1510915933:138579..139413Clytia hemisphaericaexon
TCONS_00073640-exon-scaffold_96-1575043694:138579..139413TCONS_00073640-exon-scaffold_96-1575043694:138579..139413Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073640-proteinTCONS_00073640-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_96supercontigscaffold_96:138579..139413 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201483	0.0653961	0.262431	0	0.0556461	0	0	0	0.205975	0	0	0.0582126	0.128005	0.0461735	0	0	0.0799961	0.118769	0	0	0	0	0.0767648	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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