TCONS_00073633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073633
Unique NameTCONS_00073633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073633 ID=TCONS_00073633|Name=TCONS_00073633|organism=Clytia hemisphaerica|type=transcript|length=554bp
atttggttttattgataataattttctttgtctAATAATATCTTCTTTCC
CGTTTTTGTGCTCACAATCTCATGCCCACTATTTTGCAGACCATGCTACC
TGAAAGTTATGTACATTAGAATGACCTTTaacagaccaaatcaaaccata
aaaactattattctccccaattagataacgttttaagctgttttgagggt
gtaaaaagtgaaaaattttcttcgtcgaccaaccatggtgggcgacattt
cTTTCCTAAACCTTCCCCTCCCCCACTCAAATGGCTCGCCGTGGCCCATG
AATCTGCATACTCTCTTCTCTCTCTCTcaattgtaaaaattgtttgctga
agggtacaaagattttcttgaaatagtTGGTCGACATTCAATCATCTTTG
ACATTAATGATCTTTGACATTTTCAGCTCTGTCACATCCAAAATCAATGT
CATAAGCATGAAATCTTACTTGTGTTTTACTGCCTATAAATTCTCTACTT
GGGAAGACCACTTACTCGACCTAACTTAAACTAGGACTACAATTAGAAAA
CATT
Run BLAST on NCBI

transcript from alignment at scaffold_96:670..1223

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073633 ID=TCONS_00073633|Name=TCONS_00073633|organism=Clytia hemisphaerica|type=transcript|length=554bp|location=Sequence derived from alignment at scaffold_96:670..1223 (Clytia hemisphaerica)
AATGTTTTCTAATTGTAGTCCTAGTTTAAGTTAGGTCGAGTAAGTGGTCT TCCCAAGTAGAGAATTTATAGGCAGTAAAACACAAGTAAGATTTCATGCT TATGACATTGATTTTGGATGTGACAGAGCTGAAAATGTCAAAGATCATTA ATGTCAAAGATGATTGAATGTCGACCAactatttcaagaaaatctttgta cccttcagcaaacaatttttacaattgAGAGAGAGAGAAGAGAGTATGCA GATTCATGGGCCACGGCGAGCCATTTGAGTGGGGGAGGGGAAGGTTTAGG AAAgaaatgtcgcccaccatggttggtcgacgaagaaaatttttcacttt ttacaccctcaaaacagcttaaaacgttatctaattggggagaataatag tttttatggtttgatttggtctgttAAAGGTCATTCTAATGTACATAACT TTCAGGTAGCATGGTCTGCAAAATAGTGGGCATGAGATTGTGAGCACAAA AACGGGAAAGAAGATATTATTagacaaagaaaattattatcaataaaacc aaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045723XLOC_045723Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073633-exon-scaffold_96-1491911889:670..1223TCONS_00073633-exon-scaffold_96-1491911889:670..1223Clytia hemisphaericaexon
TCONS_00073633-exon-scaffold_96-1510915933:670..1223TCONS_00073633-exon-scaffold_96-1510915933:670..1223Clytia hemisphaericaexon
TCONS_00073633-exon-scaffold_96-1575043694:670..1223TCONS_00073633-exon-scaffold_96-1575043694:670..1223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_96supercontigscaffold_96:670..1223 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.64446 1.72618 2.53026 3.71475 0.832512 1.07 0.757922 0.921168 0.594988 0.449739 0.378599 0.482575 0.870088 0.721434 0.785409 1.25553 0.602803 0.63785 1.10704 1.67196 1.09218 0.684803 0 0.749998 0.714595 1.40224 0.702824 1.26928 0.380526 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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