TCONS_00073622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073622
Unique NameTCONS_00073622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length794

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073622 ID=TCONS_00073622|Name=TCONS_00073622|organism=Clytia hemisphaerica|type=transcript|length=794bp
CCGGAAGTCAGATACGAAGAGTGTGGTGAACCCAAAAAATGTCCAGtACA
CGGTGGTTGGAGTTCTTGGTCTCTGTATTCTGAATGCCAAGGTGCTTGCC
AATATGAAGAtatcccgatttcccgatcttatATTCGAACTTGTGATAAT
CCCGAACCGGATTACGGTGGACGAAAATGTGCTGGAGACAAATTCAAATC
TGAAAAATGTGACCTGAAACCCTGTCAATctGTAAAAGCAGACACAGTGG
TACAGTTTTATGGGGAAAGATTTTCCACGGAGTTGAAGGATTTAAATTCA
CAAAAAGCAAtggatttgaaagaaaaacttgaaaaagggatCAGGGAAGA
ATACTTATCAAATCATCCACAAATTGCTGAGGATTCTGATTACATTAAAG
TCACCGTACACAGTTTCAGTGACGGTAGTGGTTTTGAACCGAAGGCGata
acgaagaagaaaaattgaagagcAATGTTTTGACTATTAACAGACTCAAT
ATATACGGAAATTATACACTGTATGTGGTACACAGAGTAATGTGTTTCAA
CAAACGACGACGAAATTATGGCGTGGATTTTCAAAGCTTTATTGAGCAAC
AACTTGATAATTTCGGCCAATCATCTCCAAGAGGGCAAAATAGAGGTTGC
GGTTGGACTAGAAAGCCTAATACATAACAGTTAGGTAGAGTCGTAATAAT
ATAATGGAAATGTGAATCCCTCTTTCATAGCTGGAAGATTTACCCAGCTC
GTCTCTCTCAAACAGGAAGAAATTAGAAacccggaggggggggg
Run BLAST on NCBI

transcript from alignment at scaffold_96:23580..29018-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073622 ID=TCONS_00073622|Name=TCONS_00073622|organism=Clytia hemisphaerica|type=transcript|length=5439bp|location=Sequence derived from alignment at scaffold_96:23580..29018- (Clytia hemisphaerica)
CCGGAAGTCAGATACGAAGAGTGTGGTGAACCCAAAAAATGTCCAGGTGA
AGAAATTTATTTATATTGCTTTAAGGAGAAGGGAATACTGAATGGTTTCA
TTTGTCATAAAAATCAGATGTTTCCGAACCAGCATTTCATTAAACGTGTT
ACATCCTTCCTACATCCCATCTTACCTCACCAAAAACTGGAATTTTTTGT
TGCGCAGAAAAATAGGCTACTTAGTTACATCCTATTTAACGGGTCATTCT
ATATCGACTAGGTTGTAATACTAATGATGTTAGGATTTGCAAATGTTTTT
GTCCTTAACGAGGTGGAATCAATTTGATTTCATTTATTATTTCACCTTTC
AAAGTTGTATTTAATAGCTGATGAGAATCGTCACAAATAACTTTTTTCCG
TCTTCTTTTTTCTCAAGTACACGGTGGTTGGAGTTCTTGGTCTCTGTATT
CTGAATGCCAAGGTGCTTGCCAATATGAAGATATCCCGATTTCCCGATCT
TATATTCGAACTTGTGATAATCCCGAACCGGATTACGGTGGACGAAAATG
TGCTGGAGACAAATTCAAATCTGAAAAATGTGACCTGAAACCCTGTCAAT
GTGAGATATTTGTCTTTTTGATTATTTCACTAATTTCGAATTTCAGGCTA
AGTATCTGAGGATACATATACTCATCCCCTTATCAGTAAATTCTAAATAC
TATTTCATTCGATCATTGACTGATTTATAATGACGTAACGATTATTTCCT
CCTTTTCAAGGAAGAAGCTTTCATTGATAGTTTCGTCATAAGGAATTTTA
ATTTCAATTTCAGCTGTAAAAGCAGACACAGTGGTACAGTTTTATGGGGA
AAGATTTTCGACGGAGTTGAAGGATTTAAATTCACAAAAAGCAATGGATT
TGAAANGAAAATCTAATCCTTTTCTTACAGTTCCGGGCAATTGGTCGACG
TGGACGGGTTTTGGTGAGTGTAATGTCACTTGTGGTGATGGAATGCGCAA
TTCCACCCGGAAATGTGATAACCCGGTTCCCCAAAATGGCGGTCGTAAAT
GTGAAGGGCCGGAAGTCAGATACGAAGAGTGTGGTGAACCCAAAAAATGT
CCAGGTGAAGAAATTTATTTATATTGCTTTAAGGAGAAGGGAATACTGAA
TGGTTTCATTTGTCATAAAAATCAGATGTTTCCGAACCAGCATTTCATTA
AACGTGTTACATCCTTCCTACATCCCATCTTACCTCACCAAAAACTGGAA
TTTTTTGTTGCGCAGAAAAATAGGCTACTTAGTTACATCCTATTTAACGG
GTCATTCTATATCGACTAGGTTGTAATGCTAATGATGTTAGGATTTGCAA
ATGTTTTTGTCCTTAACGAGGTGGAATCAATTTGATTTCATTTATTATTT
CACCTTTCAAAGTTGTATTTAATAGCTGATGAGAATCGTCACAAATAACT
TTTTTCCGTCTTCTTTTTTCTCAAGTACACGGTGGTTGGAGTTCTTGGTC
TCTGTATTCTGAATGCCAAGGTGCTTGCCAATATGAAGATATCCCGATTT
CCCGATCTTATATTCGAACTTGTGATAATCCCGAACCGGATTACGGTGGA
CGAAAATGTGCTGGAGACAAATTCAAATCTGAAAAATGTGACCTGAAACC
CTGTCAATGTGAGATATTTGTCTTTTTGATTATTTCACTAATTTCGAATT
TCAGGCTAAGTATCTGAGGATACATATACTCATCCCCTTATCAGTAAATT
CTAAATACTATTTCATTCGATCATTGACTGATTTATAATGACGTAACGAT
TATTTCCTCCTTTTCAAGGAAGAAGCTTTCATTGATAGTTTCGTCATAAG
GAATTTTAATTTCAATTTCAGCTGTAAAAGCAGACACAGTGGTACAGTTT
TATGGGGAAAGATTTTCCACGGAGTTGAAGGATTTAAATTCACAAAAAGC
AATGGATTTGAAAGAAAAACTTGAAAAAGGGGTAAGTAAGGGAAGAAGCT
TTTCATTTACATATCCCAGCACATATCGATCGAATACAGGGTGTTACTCT
GGGTTAATATCAACCTTCTAAAGTTTAGAAATTTGCTATTTGCTTTTTTG
AATTTTGTGCTATGGCAAGCTTGAACATAGATACTATTTTATATTGCAGT
ATCTGAAAATGAATATTGAAAAGAGCATTATTTTTTTCACTTTTCAGATC
AGGGAAGAATACTTATCAAATCATCCACAAATTGCTGAGGATTCTGATTA
CATTAAAGTCACCGTACACAGTTTCAGGTAACAGATTTCTTCAGTAAAAT
CTGTATAAGGTGTGTCTTGAATATGCGGAGCACGATTTATATAAAGAATC
TTGGACTTATTTTAGAGGACCTTCGGTAGTTTTCATGATGGCGTGATCGG
GGCGTTCTTCTCGCGAGATAAGAGTTGTTCTAAATATTTTCATGTTGGCG
TGAACAAGGGGTGGAATAAGGAAAAATGGGAAAATTAAGGTGGCCATCCA
CTGGAAATTGAAAAATCGACCTTTTAACTTTAAATGTTGATTACTCAATA
ACTAAAAATGATATGGGCTTGAAACTTCCAGGTATTATTATTTATGACCT
AAAGTTAATATTTAAAAAAAAATTTAAAAAAAAAATTGGAAGACGGGGGT
TTGGTACGACTTTTCGGAAAAATCAAAATAATCTTGTGTCAACGTTTTAG
AGAAAACTACAAATACTTGGTTAATGATTTTTGGTATGTAGAGGCACTTT
AGAACAAAGAATGGAATGAGCGAAATTTTTTTTTGAAAAATCCAAAATCC
GGGGGTAAAAGTCAAAAAAACAGTTTTTTCAAAATATGAGATCTGGAATT
AGTGAAATCTGAAAAATCCTTCGCTCATTCCACAGCCCTCAGAGATGTGC
AAATACCCTGAAAAAATCAGACCAATCGGACAACTAGATCCTGAGATTTT
TCCGCCGCAGTGATTGGAAACCCCCGGATTTGCGTTTTGAGAAATCGTGC
TTTTAAAACATAAATTGCGGTTAAATGAAAAGATTATAGTTTTCAATAGG
GATTTTTTTATGATTTGAGACTATAAGGGAGTTTTCTACATTATTTCAAA
GGAAATAAGGATTTAAAACTATTTACAGTGAAAATTTTGGCCAATTTGAG
TGACATTTTGATCATTTCCAGAAAACCGCAAAACTTTGAAAAAAGACCGC
AAAACTCATATTTTCACCACGAAAACCACCCCGAAATGTAAATAACAATG
CCCACATTCATTGTAAGACTATTTTGGACTATTCCTATCAGAAGGGATTA
AAAACTTAATCGCACGATGAGTTATTTTTTCTTCTTTGGCACGCCTTCAA
AGAGAGCAATTAATCGTTAATTGCATCCTGTAGAGAGCAATTAATCGTTA
ATCACACTCTTCAATGAGACGCCAATATTTACAAAATTGATTTTAATGTT
TTTTCTTACATTTTTTTTGCATCGAACGTTTTAATTGCATTCGAAATTTA
TTTTGTGAGAAAGAAAATCAATAAACAACAATAAAAGAAAGACATAAAGA
GAAGAGAATAATATAAAACTCTCAGTGTAATTTCTGTAATTTACTTTCCT
AACTGGGAAAAAGTAGTGAAAGCCATTGTGCGATTAGCTCGTAATCACAT
AATAACTCGTACAATTCGGAAATTGCACTCGTGATTTTTTTGTTTCGAAT
TTTCCTCGTCCTTTCGGAGGACCCTGCCGACGCACCGGACGTAACGAACA
CCGGACACGCGAAAGTCCGGTGTAAAATTAGAATTTTTTTTACCACCGGA
CAATTTCTACACCGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAG
GTAGGTATTTTAAAACCTAAAATTTTCTGCTTATTCTTTACTTTTATGAA
TTGAAATTTTCAGAGGTTGTTCCAGAGAAGTTATACTTGACTTTCAGCCA
AAAAAATAAAAAACCACCAAAAAAGTATCACTATTTTCAAACTCAGTGGA
TGACCNAATCAATTAAGTTAAAATATTCATTCAAAAAGCTCTGGAACTGA
AGACTCATTATCGTGTTACATGGCACTTTCACTTTCACTTTCATGCCACT
GCTGAAAGCATAACGAAACCGCCAAAATCTAATCCCACACAGTTGAAAAA
GTAATTTGAAGATGATTGTGTTGTTTTCTAATAGATTCCTGGCAAAAAAA
CATTAAAATAGCACCAAAAAAAGAATATACAAGCAAACAAAAGTACTACA
TACCTTTGGCGCACTACACAACAACCGACCGTGCTCTTAATCAATNGAAT
AAGGAAAAATGGGAAAATTAAGGCGTGATGGCGTGATTTGGGCGATTCTT
TGCGTACTAAACATAACTTGGTGAGGGGGCTCTCTAGTAAGTATGGACAG
CGCTTAACATCTTAAAGTCATACCATCATGAAAAATACGCAGTGGTGGGT
CTCATGTCTACTAACATACCGGAAATCAACCTCGTTCCCTGCGTATTGTT
TGCCTTTTGACGCTTACTGATAGCGCTAAAAATACCCTGGCATTGTTTGT
TTATTTTCGAACGTCTAAGATTACGGAATTCAAAAGCTAAACGTCAGATT
TCATTTGTTCCTGGATTTAAAACCATTGCATTTTTCTTTAACGCAGATGT
TCTACGTCCAACAGCAATGTAACTTTGTAACGTCAGATTTTTTTATGACG
TATTGTTTTGAAAAGTTCCCCCTCTGAGAGGGGGGCTCGCATCAGCCAAC
ACCAGGGTATTCTCTGGCGTCCATAAGTATCGTAAATAAAGGGGACGAGG
TTGACCGGAAATGTAATGAGAATGTAGAGATGAATGAACGAAAGTCTAAT
CTGGTCGACTGTTCAACCTCGTCCTCATGTATATCAGGCTTTATCTTTAT
AAGCGTTTATAAACGACAAGGTATTCTTATCTAGTGCCATCAGTTAGATG
ATAATATGCTGGATAGGTTGAACATTTTGTCTTGACTTTAATACTGGAAA
TTTTGTCATTTCAGTGACGGTAGTGGTTTTGAACCGAAGGCGATAACGAA
GAAGAAAAATTGAAGAGCAATGTTTTGACTATTAACAGACTCAATATATA
CGGAAATTATACACTGTATGTGGTACACAGAGTAATGTGTTTCAACAAAC
GACGACGAAATTATGGCGTGGATTTTCAAAGCTTTATTGAGCAACAACTT
GATAATTTCGGCCAATCATCTCCAAGAGGGCAAAATAGAGGTTGCGGTTG
GACTAGAAAGCCTAATACATAACAGTTAGGTAGAGTCGTAATAATATAAT
GGAAATGTGAATCCCTCTTTCATAGCTGGAAGATTTACCCAGCTCGTCTC
TCTCAAACAGGAAGAAATTAGAAACCCGGAGGGGGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045720XLOC_045720Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073622-exon-scaffold_96-1575043694:28973..29018TCONS_00073622-exon-scaffold_96-1575043694:28973..29018Clytia hemisphaericaexon
TCONS_00073622-exon-scaffold_96-1575043694:27361..27543TCONS_00073622-exon-scaffold_96-1575043694:27361..27543Clytia hemisphaericaexon
TCONS_00073622-exon-scaffold_96-1575043694:27038..27147TCONS_00073622-exon-scaffold_96-1575043694:27038..27147Clytia hemisphaericaexon
TCONS_00073622-exon-scaffold_96-1575043694:26742..26821TCONS_00073622-exon-scaffold_96-1575043694:26742..26821Clytia hemisphaericaexon
TCONS_00073622-exon-scaffold_96-1575043694:23580..23954TCONS_00073622-exon-scaffold_96-1575043694:23580..23954Clytia hemisphaericaexon
TCONS_00073622-exon-scaffold_96-1510915933:28973..29018TCONS_00073622-exon-scaffold_96-1510915933:28973..29018Clytia hemisphaericaexon
TCONS_00073622-exon-scaffold_96-1510915933:27361..27543TCONS_00073622-exon-scaffold_96-1510915933:27361..27543Clytia hemisphaericaexon
TCONS_00073622-exon-scaffold_96-1510915933:27038..27147TCONS_00073622-exon-scaffold_96-1510915933:27038..27147Clytia hemisphaericaexon
TCONS_00073622-exon-scaffold_96-1510915933:26742..26821TCONS_00073622-exon-scaffold_96-1510915933:26742..26821Clytia hemisphaericaexon
TCONS_00073622-exon-scaffold_96-1510915933:23580..23954TCONS_00073622-exon-scaffold_96-1510915933:23580..23954Clytia hemisphaericaexon
TCONS_00073622-exon-scaffold_96-1491911889:28973..29018TCONS_00073622-exon-scaffold_96-1491911889:28973..29018Clytia hemisphaericaexon
TCONS_00073622-exon-scaffold_96-1491911889:27361..27543TCONS_00073622-exon-scaffold_96-1491911889:27361..27543Clytia hemisphaericaexon
TCONS_00073622-exon-scaffold_96-1491911889:27038..27147TCONS_00073622-exon-scaffold_96-1491911889:27038..27147Clytia hemisphaericaexon
TCONS_00073622-exon-scaffold_96-1491911889:26742..26821TCONS_00073622-exon-scaffold_96-1491911889:26742..26821Clytia hemisphaericaexon
TCONS_00073622-exon-scaffold_96-1491911889:23580..23954TCONS_00073622-exon-scaffold_96-1491911889:23580..23954Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_96supercontigscaffold_96:23580..29018 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.215629	0	0.356857	0.324171	1.29229	1.24098	0.664758	0.388185	0.0175691	0.155407	1.01933	0.325422	0	0.729906	0.867331	0.261255	0	0.910093	0.322397	0.150406	0.41798	1.56143	0.738574	0.431151	1.29858	2.10828	0.157311	0.448905	0.139691	0.0288271
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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