TCONS_00073621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073621
Unique NameTCONS_00073621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1159

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073621 ID=TCONS_00073621|Name=TCONS_00073621|organism=Clytia hemisphaerica|type=transcript|length=1159bp
AACCAATCAATACTCATTCTTTCCTGAACCTTGTTCAGGgcGTAAACCCA
AGTTTACGAAGTGTAAACCTAGGTTTTAAAGCTTAATTCCAGGTTTACAA
AGCGCAAACCTAGGTTTGCTatattttttgtacatttgGGCTTCCAAAAG
GCCCAAGTATAAAAAATAATGTGAAATCTATGTGAAAACATATCCTCAAC
CGCTGCACATATCTGTCGGTCAATTTGGCTGACTCCCTCCCCCCGGAAGT
CACTGCAATGAGAAACACGTAAACGACTGTAAATAGCGCTTTACCATACG
ATACGGTTCATTATTGGATGAACCAACAGTATTTCACAAATTATGGAACC
ATCCTATAATACATGATCTAAAGTGACATGAAATACTATTCATTTCTCGC
GAAGATTTGAGACTCGTCTCTCACAGTAAATCCAGAATAACCTTGACCAT
ACCTTGAAGGATCCATATTGAGTCCCAATAACAAACACCATTATGCTGAC
AGCTTCTTCAAATGTTTTGAGCTGGTTCAAACGTTAAGGATGATCAATTT
CTTGCTGAACCGTCTTTGTATGCATTTAATAAACTGATGTAACTGTTGGA
TCCCATTGTGGTTATGTTCGGTGTCATTTTGCCCgaggcactcatatggt
ccgacccacggcatgtgccgTCTTTAAAGGCAATTTTGTAAGCCAACTTT
TTTTGGTGACACATAATGTcatttagaaatcgagtgccccctccGGGCCt
ggaagccttaaaatgttctcagtTCTTCTTACACATAAATGGATCAATTA
TTGGCATAGTCATTTACAGAAGACGAGTAGattcaatttatttattttgc
taaaaataaaagaaaaacaaaatataatgaaaCAAATAGAAGCCAAAATC
TCAGTGAAACATAGAATTGTTTTAAACGCAGCAAATTTGCACCAGTACAA
TTAGTTCTGCCAATAATTGAAGAAACTATTTTGTGACGACACTAAATTCC
AGTCATACCAAACTAAGGAACCCATAATCATTCACACAGACAGATATATC
TAGCTCGTCTGAAGTTTGAGAATCATAACAACAATGATAGAATTTTACCA
GAACGCaaagaatatttcttttttatatttcgtTAAATTTTTACACAACA
GAACAGTTT
Run BLAST on NCBI

transcript from alignment at scaffold_96:19454..20850-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073621 ID=TCONS_00073621|Name=TCONS_00073621|organism=Clytia hemisphaerica|type=transcript|length=1397bp|location=Sequence derived from alignment at scaffold_96:19454..20850- (Clytia hemisphaerica)
AACCAATCAATACTCATTCTTTCCTGAACCTTGTTCAGGGCGTAAACTAG
TCTACACAATAGACAGATCCAGGCTTTTAGGCCTTACTCTTGTGCTATAG
CGCACTGCTATAGACGGCCACGATTTATCTGGAGAATTTCAATATTCAAA
ACAAGAGCAGTGCTCATAGCTCGAAGAGTAGGAGTTTTACGCTCGAAACG
AAGGAAGATATGACGTAGCCTAGGCGTAAACCCAAGTTTACGAAGTGTAA
ACCTAGGTTTTAAAGCTTAATTCCAGGTTTACAAAGCGCAAACCTAGGTT
TGCTATATTTTTTGTACATTTGGGCTTCCAAAAGGCCCAAGTATAAAAAA
TAATGTGAAATCTATGTGAAAACATATCCTCAACCGCTGCACATATCTGT
CGGTCAATTTGGCTGACTCCCTCCCCCCGGAAGTCACTGCAATGAGAAAC
ACATAAACGACTGTAAATAGCGCTCNCCCCCCGGAAGTCACTGCAATGAG
AAACACGTAAACGACTGTAAATAGCGCTTTACCATACGATACGGTTCATT
ATTGGATGAACCAACAGTATTTCACAAATTATGGAACCATCCTATAATAC
ATGATCTAAAGTGACATGAAATACTATTCATTTCTCGCGAAGATTTGAGA
CTCGTCTCTCACAGTAAATCCAGAATAACCTTGACCATACCTTGAAGGAT
CCATATTGAGTCCCAATAACAAACACCATTATGCTGACAGCTTCTTCAAA
TGTTTTGAGCTGGTTCAAACGTTAAGGATGATCAATTTCTTGCTGAACCG
TCTTTGTATGCATTTAATAAACTGATGTAACTGTTGGATCCCATTGTGGT
TATGTTCGGTGTCATTTTGCCCGAGGCACTCATATGGTCCGACCCACGGC
ATGTGCCGTCTTTAAAGGCAATTTTGTAAGCCAACTTTTTTTGGTGACAC
ATAATGTCATTTAGAAATCGAGTGCCCCCTCCGGGCCTGGAAGCCTTAAA
ATGTTCTCAGTTCTTCTTACACATAAATGGATCAATTATTGGCATAGTCA
TTTACAGAAGACGAGTAGATTCAATTTATTTATTTTGCTAAAAATAAAAG
AAAAACAAAATATAATGAAACAAATAGAAGCCAAAATCTCAGTGAAACAT
AGAATTGTTTTAAACGCAGCAAATTTGCACCAGTACAATTAGTTCTGCCA
ATAATTGAAGAAACTATTTTGTGACGACACTAAATTCCAGTCATACCAAA
CTAAGGAACCCATAATCATTCACACAGACAGATATATCTAGCTCGTCTGA
AGTTTGAGAATCATAACAACAATGATAGAATTTTACCAGAACGCAAAGAA
TATTTCTTTTTTATATTTCGTTAAATTTTTACACAACAGAACAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045719XLOC_045719Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073621-exon-scaffold_96-1575043694:20812..20850TCONS_00073621-exon-scaffold_96-1575043694:20812..20850Clytia hemisphaericaexon
TCONS_00073621-exon-scaffold_96-1575043694:20399..20627TCONS_00073621-exon-scaffold_96-1575043694:20399..20627Clytia hemisphaericaexon
TCONS_00073621-exon-scaffold_96-1575043694:19454..20344TCONS_00073621-exon-scaffold_96-1575043694:19454..20344Clytia hemisphaericaexon
TCONS_00073621-exon-scaffold_96-1510915933:20812..20850TCONS_00073621-exon-scaffold_96-1510915933:20812..20850Clytia hemisphaericaexon
TCONS_00073621-exon-scaffold_96-1510915933:20399..20627TCONS_00073621-exon-scaffold_96-1510915933:20399..20627Clytia hemisphaericaexon
TCONS_00073621-exon-scaffold_96-1510915933:19454..20344TCONS_00073621-exon-scaffold_96-1510915933:19454..20344Clytia hemisphaericaexon
TCONS_00073621-exon-scaffold_96-1491911889:20812..20850TCONS_00073621-exon-scaffold_96-1491911889:20812..20850Clytia hemisphaericaexon
TCONS_00073621-exon-scaffold_96-1491911889:20399..20627TCONS_00073621-exon-scaffold_96-1491911889:20399..20627Clytia hemisphaericaexon
TCONS_00073621-exon-scaffold_96-1491911889:19454..20344TCONS_00073621-exon-scaffold_96-1491911889:19454..20344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_96supercontigscaffold_96:19454..20850 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.52283	0.655511	0.21142	0.206841	2.26628	2.18881	3.3609	2.29974	1.45205	2.84558	0.983723	1.72997	1.27151	1.01258	1.16631	1.5743	2.21474	1.81029	0.635177	0.706208	1.70419	2.23209	1.15611	1.01215	1.56706	1.28824	0.776817	0.443897	0.37305	0.42231
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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