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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073620 ID=TCONS_00073620|Name=TCONS_00073620|organism=Clytia hemisphaerica|type=transcript|length=1148bp
CCGCCCAGTAGTCATGATATCTTTGTTAGATAAATATATTTGACGTATCA
TAGCAACAAGACAAGCTTTTGACGGCTTATTAGTTACATtgtatatttga
cgtcaatttactACTTTGAACTAGTTTTATCtactttgacgtcaaaaaaa
gtttaaaaatttgtACAACAGCTTTGAAAACTTCCTTTTCTACAAACAAC
TCAACGAAACAAGACGTCAGTCTTAACGCAACATTTTCATTCGAAGTAAA
CGCTCAAACTTCATCGAAGAATTCCAGCGTTCAATATAACACATTTTAAA
CAACGAGGCACGGACCATAAGACCGCTTTTTAAACATTTCAATACAAACA
AAATGTCTGGTCTCTCCACTCACAAAACCAGCTCAGCGGGTAAATATGAC
ACTGAACAACACCCGCAAGGGCTGAAGACCAACAAACAAAAACTGATGGA
TGCTTCCCGCAGTGTCATCAACATGGATTCTGGCATCAGTCCAAACCAAC
ACGAAATCATATTGCGACACCTGGAGAAACTCGAGAAGAGCTCCCAAGGG
AACATTCGAAATCCACACATCACATCATGTGGATCACTCAGCAGCCGACA
GACATCAATCGAGCGCTTAGCTCAAGAGTTAACTAAATCCACCTATGACA
ATACTTCAACTGCCCAACTTCTACAGTCGTTGTCAGTTCTTCAGGGTGAG
AGATCAGACATTCCTGCTATGAGGAAAGACATCGATTCTCTAAAACGCTC
AGTCGATAGCACGCACACCATCTTGAAACATTTGTGCGTTGTGGTGATGG
AGGGGAACAAATCATCCGGTGCTGAACCACCCTCGGCGCCCAATGGCGTT
CCCTTTGAAGAACACGAAAGGGTGGTGTCGGAAAAAGACGTCCAAATCAA
GCGAATTAAACAACATGCTGAGACTATGTTCGACGAGTATCGATGCCACA
TCGAGAAACTCAAGGATGAAAAGGCATTATTGGCTGGCGAAGTGATAAGC
CTTAAAACAACAATGTCTAATGTCTTTACGGCTGAGATAGAAGCGAGGAA
TCTAACCATCGCCTCACAATCACAACACATTGATAAGTTGAGCACGGAAT
GCTCGAAATTGATTTTCTTATTGGAGGAAGCCAAACACCAATTAAGAG Run BLAST on NCBI protein sequence of TCONS_00073620-protein >TCONS_00073620-protein ID=TCONS_00073620-protein|Name=TCONS_00073620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MSGLSTHKTSSAGKYDTEQHPQGLKTNKQKLMDASRSVINMDSGISPNQH
EIILRHLEKLEKSSQGNIRNPHITSCGSLSSRQTSIERLAQELTKSTYDN
TSTAQLLQSLSVLQGERSDIPAMRKDIDSLKRSVDSTHTILKHLCVVVME
GNKSSGAEPPSAPNGVPFEEHERVVSEKDVQIKRIKQHAETMFDEYRCHI
EKLKDEKALLAGEVISLKTTMSNVFTAEIEARNLTIASQSQHIDKLSTEC
SKLIFLLEEAKHQLR Run BLAST on NCBI transcript from alignment at scaffold_96:133807..136383+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073620 ID=TCONS_00073620|Name=TCONS_00073620|organism=Clytia hemisphaerica|type=transcript|length=2577bp|location=Sequence derived from alignment at scaffold_96:133807..136383+ (Clytia hemisphaerica)
CCGCCCAGTAGTCATGATATCTTTGTTAGATAAATATATTTGACGTATCA
TAGCAACAAGACAAGCTTTTGACGGCTTATTAGTTACATtgtatatttga
cgtcaatttactACTTTGAACTAGTTTTATCtactttgacgtcaaaaaaa
gtttaaaaatttgtACAACAGCTTTGAAAACTTCCTTTTCTACAAACAAC
TCAACGAAACAAGACGTCAGTCTTAACGCAACATTTTCATTCGAAGTAAA
CGCTCAAACTTCATCGAAGAATTCCAGCGTTCAATATAACACATTTTAAA
CAACGAGGCACGGACCATAAGACCGCTTTTTAAACATTTCAATACAAACA
AAATGTCTGGTCTCTCCACTCACAAAACCAGCTCAGCGGGTAAATATGAC
ACTGAACAACACCCGCAAGGGCTGAAGACCAACAAACAAAAACTGATGGA
TGCTTCCCGCAGTGTCATCAACATGGATTCTGGCATCAGTCCAAACCAAC
ACGAAATCATATTGCGACACCTGGAGAAACTCGAGAAGAGCTCCCAAGGG
AACATTCGAAATCCACACATCACATCATGTGGATCACTCAGCAGCCGACA
GACATCAATCGAGCGCTTAGCTCAAGAGTTAACTAAATCCACCTATGACA
ATACTTCAACTGCCCAACTTCTACAGTCGTTGTCAGTTCTTCAGGGTGAG
AGATCAGACATTCCTGCTATGAGGAAAGACATCGATTCTCTAAAACGCTC
AGTCGATAGCACGCACACCATCTTGAAACATTTGTGCGTTGTGGTGATGG
AGGGGAACAAATCATCCGGTGCTGAACCACCCTCGGCGCCCAATGGCGTT
CCCTTTGAAGAACACGAAAGGGTGGTGTCGGAAAAAGACGTCCAAATCAA
GCGAATTAAACAACATGCTGAGACTATGGTAAGTTTTTTTGATTCCTTAA
ATTTTCAACAAGATCACATCGAGAATAACAATAATtattcttttttgaga
ttctacTATCACTATACTAGTGCTTTAGAAGCTGGCAacttataattata
tttgaAGTGTCCCCTCACTTGTAGCACAATGAGCCTTCGTTACCCAAAGA
AGATTTTGAAGCTTAGAAGTGGTTTTCAGTTTCTGTGTTATTTCCATACT
CAGCTCACTACTTAAATTAAAATACATTGATAGAGCAAGGAAGTCTTTTG
TTAGGCTTGCCATGGTAaagtggtagtcgaccttggcttctgtgcaggag
gccagggttcgattcccactcacggcagttcacttggcaagtgaacgttc
ctttgcccgggtcaacccatggaAATTGAATGTTCTTAGGCGACATGTTG
TGTTATTGATAGGAAATTGGGTAAACAGAAACTCAAGTAACCTGTCTGGA
TCGATCACATAAAACCTGTTGATAATGTTGCGAATTtgctaaaattcgcg
aaattaaatggtcgtgaaaaaaatgaatattatgttgatttgcaaaatta
aattcccgcgaaataaaaaaaatttcgcgaatggccTGACTCTTGCAATC
TAGTTTTACTAGATATTTAAAAGTACTCTTGTCTCGCGAATAGACGgagg
ggggtccgaataagcagggggtaggaaaattttcttaattctaATAAGTG
GGGGGGAGACAAAAAttcgtctattcgggagacaagagtagctttaactt
tttttaaattgatagtttttttctcaaaatcagGAATACTGTTTAATAAC
GTCACTCCCTTAGTAGGAAAATTGCATTGCACTTTTCTAGTCAATCAGGC
ATTATCAACATTAAATCAAAGTCAGTTTATTTGAAATATaattcgaacta
ctttttcaaacctaatgtatgatagctcaaaattcaagttagagcatcat
ctaaacaatcctgaaaaaatcctcgacaaacctgtatacttttttttttg
gtgcacctgGTATATTTTTTAACTCTTAGTGTTTCGAGCACTCTAGTGGA
AACACGCTCGTTTACCGCGGCCTGATATGTCCTGGGCAGGAACACGTGTC
CGCGGAAAGATGAAACACAAATGTAGGAGTGCTCTTGTGAAAAATTTAAG
ATACCCTTGCATTGAAGCGATAAAGTAACTTCAATATAGTTAAGCCATAC
GAATGCTGAAAATAGTTTGCACTCTACCGCAAAGACTCGGGAAATGCCTC
TAGAGTTTTGGCTGGAATTTGCTTGGTTTGATTTAGTTAATAGACTAAAA
ATGCCGTGCACCGAGAGCAAATCTTCCTTGTAAATTAATTTCCAGTCCTT
TAAAAAGCCGATCGCTCCGCTAAGGTCTGATATGCATTATGTTACATTCT
TTTATAGTTCGACGAGTATCGATGCCACATCGAGAAACTCAAGGATGAAA
AGGCATTATTGGCTGGCGAAGTGATAAGCCTTAAAACAACAATGTCTAAT
GTCTTTACGGCTGAGATAGAAGCGAGGAATCTAACCATCGCCTCACAATC
ACAACACATTGATAAGTTGAGCACGGAATGCTCGAAATTGATTTTCTTAT
TGGAGGAAGCCAAACACCAATTAAGAG Coding sequence (CDS) from alignment at scaffold_96:133807..136383+ >TCONS_00073620 ID=TCONS_00073620|Name=TCONS_00073620|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at scaffold_96:133807..136383+ (Clytia hemisphaerica)
ATGTCTGGTCTCTCCACTCACAAAACCAGCTCAGCGGGTAAATATGACAC
TGAACAACACCCGCAAGGGCTGAAGACCAACAAACAAAAACTGATGGATG
CTTCCCGCAGTGTCATCAACATGGATTCTGGCATCAGTCCAAACCAACAC
GAAATCATATTGCGACACCTGGAGAAACTCGAGAAGAGCTCCCAAGGGAA
CATTCGAAATCCACACATCACATCATGTGGATCACTCAGCAGCCGACAGA
CATCAATCGAGCGCTTAGCTCAAGAGTTAACTAAATCCACCTATGACAAT
ACTTCAACTGCCCAACTTCTACAGTCGTTGTCAGTTCTTCAGGGTGAGAG
ATCAGACATTCCTGCTATGAGGAAAGACATCGATTCTCTAAAACGCTCAG
TCGATAGCACGCACACCATCTTGAAACATTTGTGCGTTGTGGTGATGGAG
GGGAACAAATCATCCGGTGCTGAACCACCCTCGGCGCCCAATGGCGTTCC
CTTTGAAGAACACGAAAGGGTGGTGTCGGAAAAAGACGTCCAAATCAAGC
GAATTAAACAACATGCTGAGACTATGTTCGACGAGTATCGATGCCACATC
GAGAAACTCAAGGATGAAAAGGCATTATTGGCTGGCGAAGTGATAAGCCT
TAAAACAACAATGTCTAATGTCTTTACGGCTGAGATAGAAGCGAGGAATC
TAACCATCGCCTCACAATCACAACACATTGATAAGTTGAGCACGGAATGC
TCGAAATTGATTTTCTTATTGGAGGAAGCCAAACACCAATTAAGAATGTC
TGGTCTCTCCACTCACAAAACCAGCTCAGCGGGTAAATATGACACTGAAC
AACACCCGCAAGGGCTGAAGACCAACAAACAAAAACTGATGGATGCTTCC
CGCAGTGTCATCAACATGGATTCTGGCATCAGTCCAAACCAACACGAAAT
CATATTGCGACACCTGGAGAAACTCGAGAAGAGCTCCCAAGGGAACATTC
GAAATCCACACATCACATCATGTGGATCACTCAGCAGCCGACAGACATCA
ATCGAGCGCTTAGCTCAAGAGTTAACTAAATCCACCTATGACAATACTTC
AACTGCCCAACTTCTACAGTCGTTGTCAGTTCTTCAGGGTGAGAGATCAG
ACATTCCTGCTATGAGGAAAGACATCGATTCTCTAAAACGCTCAGTCGAT
AGCACGCACACCATCTTGAAACATTTGTGCGTTGTGGTGATGGAGGGGAA
CAAATCATCCGGTGCTGAACCACCCTCGGCGCCCAATGGCGTTCCCTTTG
AAGAACACGAAAGGGTGGTGTCGGAAAAAGACGTCCAAATCAAGCGAATT
AAACAACATGCTGAGACTATGTTCGACGAGTATCGATGCCACATCGAGAA
ACTCAAGGATGAAAAGGCATTATTGGCTGGCGAAGTGATAAGCCTTAAAA
CAACAATGTCTAATGTCTTTACGGCTGAGATAGAAGCGAGGAATCTAACC
ATCGCCTCACAATCACAACACATTGATAAGTTGAGCACGGAATGCTCGAA
ATTGATTTTCTTATTGGAGGAAGCCAAACACCAATTAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073620-exon-scaffold_96-1491911889:133807..134734 | TCONS_00073620-exon-scaffold_96-1491911889:133807..134734 | Clytia hemisphaerica | exon |
| TCONS_00073620-exon-scaffold_96-1510915933:133807..134734 | TCONS_00073620-exon-scaffold_96-1510915933:133807..134734 | Clytia hemisphaerica | exon |
| TCONS_00073620-exon-scaffold_96-1575043694:133807..134734 | TCONS_00073620-exon-scaffold_96-1575043694:133807..134734 | Clytia hemisphaerica | exon |
| TCONS_00073620-exon-scaffold_96-1491911889:136164..136383 | TCONS_00073620-exon-scaffold_96-1491911889:136164..136383 | Clytia hemisphaerica | exon |
| TCONS_00073620-exon-scaffold_96-1510915933:136164..136383 | TCONS_00073620-exon-scaffold_96-1510915933:136164..136383 | Clytia hemisphaerica | exon |
| TCONS_00073620-exon-scaffold_96-1575043694:136164..136383 | TCONS_00073620-exon-scaffold_96-1575043694:136164..136383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_96 | supercontig | scaffold_96:133807..136383 + |
Blast
The following BLAST results are available for this feature:
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