TCONS_00073617 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073617
Unique NameTCONS_00073617
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073617 ID=TCONS_00073617|Name=TCONS_00073617|organism=Clytia hemisphaerica|type=transcript|length=1431bp
GGGAGGAGAGCAAATATACACAACAACATCAAAGCAAAGGTAATAGGGAA
GAGAACAGATACCCTGAGGAGAGTAGGTTTACACAACAACATCAACATCA
AGCAGATAGCAAGGAAACTGATGAATCTCCATCAAAGAATGGTGCTAGTG
ATGGTGAACTGAGcagtaaagaaaaagaaagGTTGGTTTTCAACTATTTG
AAAGCACATCGACATGAATTTATGAAAGAGGACTCCCAACCATCAGACCA
TCACGGAGAAGGCGGGGGCGGAGAACAGAGCCGCCCAGCTAACATGTACC
AGCATGAGCAAGATAACAATCAGTATGGCAAAGGACAGCAAATGTATGAT
GAACGAATGGGATCGAATTCTGAAGGGAAACTCCATCGTGCAGACGAGGA
ACAGGTTTTAGCAGACGCAAAACCCCTGCGGCAAGCTGGAGGTTCTCACG
AGTTACCATTCGAATATGTCGCACAAGAAGAAGATAAACATCATCCAACG
AGTGAATCACATGGaatggaaaacgaaagtgaaagtagtcaACAAAGACA
CAAGTTCCATGGAGAGGACGAGAAGATTGGAAACGAGCCAATGACGCGTG
AAGAAATGACAGAGGAgaaatataaaaatgttttcaataatGAGGATGGC
ACAAAGAATGACCGATCTAAAGGAGGCGAGCAGAGTAAGGACggaaagaa
agaagatggaaagaagAATGGTGAACTGTTCACATCTGAAGATAAGaaca
aagagaaagaaaaagataatgAAGAAGATGATGACAAATACAAAAGTTTC
CAAGGTTTCAAATTCCGATACGGCCCAACCGAGTCATTCAACAAACAACA
AGACGATAAACCTAAAAAGCTaaagaaaggaaagaaaatataCCCCGACG
ATGATAGCGCTCCTCAACAATCTATCAAGACAAAACCGAGTGTGGGCGGA
GCCAATTTTGGTGTTAGTGACTTCACTGGTACTGGAGGCGGGGTTGGTGG
AAATACGGGCGGAATGGAATCAGACGCCCCTTCAAAAGTGAGCAGCCACC
ACGAACACGAAGAGGGGACGGCACCTTCACCTTTTGAGCCAGAGGAGAAA
TTATCCTATCACCCAACCAAAGAACCTGGTTACAGTAGATTCAAAGACGA
TCAAAATCGTGAAGAAGaAAGACAGCCGCTAAGCCATCAACAAAATGGAA
TGGACAAGAACACTTCACCTTACCATAGCCATGAAATCCAAGAGAAACAC
GGCGAAAATGAACACCAATCAGTCACAAACAGAGAATCGTTCGCAAGTGC
TCCCAATGAGTCGGAAGCTTTCAGTATAGGTAAACACCATCACGTGAAAG
GCTATGCAGATTCTCACGCAACATTCAGGATTCACAATAAAAAAGTCGAA
GATATCACCTCAAAGAAATCAAGCCCAAATC
Run BLAST on NCBI

transcript from alignment at scaffold_96:104493..107851+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073617 ID=TCONS_00073617|Name=TCONS_00073617|organism=Clytia hemisphaerica|type=transcript|length=3359bp|location=Sequence derived from alignment at scaffold_96:104493..107851+ (Clytia hemisphaerica)
GGGAGGAGAGCAAATATACACAACAACATCAAAGCAAAGGTGAAGACCAT
GGATACTCACATCAAGAAGAAGGTAAATTACCGCTAGTCTAAAGAAAAAG
CTTTTACCAGAACTTAGCAAAGGTTCCAATTACCCAAACGAGGAACGAAA
TAGGTACTAAAAACAAGGAGAAAGTTTGattgaaaacaataaagtttAAT
CATAGTGGAATACCACCACTAGTTAAGATTGTGTCACGTtgtcaaaaatg
tttgaaaactgGAAAATTGAGATCGTGAAAAAAACTCCGTATCTTTCCTT
CATCAGGTAATAGGGAAGAGAACAGATACCCTGAGGAGAGTAGGTTTACA
CAACAACATCAACATCAAGCAGATAGCAAGGAAACTGATGAATCTCCATC
AAAGAATGGTGCTAGTGATGGTGAACTGAGcagtaaagaaaaagaaaggt
cAGAAATTCAAATAATCATTGTTATTGATAAAGTGGACTCTTTACATGAC
TGAAGGAACCCAAACATCGCTCTCCTTTCAGCtcctttatttataagaat
ttttgtCATCCAAACTCTTGTACTGAGATCTTCTCAAGCTTCGTAAAAGG
TTGGATCGAATAATCCGTTGATTCAAAGCTTTGACTAAAGAGATCATCCC
TTATTTTTGTTGCCTGCAGATACCAATTTCTATAgtgttgaaaaaaatat
tttttgttccaaaagtttaagtattttattttgaaattttcaacttaAAA
ACTATAGGTTGGTTTTCAACTATTTGAAAGCACATCGACATGAATTTATG
AAAGAGGACTCCCAACCATCAGACCATCACGGAGAAGGCGGGGGCGGAGA
ACAGAGCCGCCCAGCTAACATGTACCAGCATGAGCAAGATAACAATCAGT
ATGGCAAAGGACAGCAAATGTATGATGAACGAATGGGATCGAATTCTGAA
GGGAAACTCCATCGTGCAGACGAGGAACAGGTTTGCAATAATACAATAGG
CCATTTAACGGTCGCATGAATTAAGGATGGGTAACAGTGCAATCAAtgaa
aatcaatcaataatttatCCCTATAATACATccgaaattttgaagatttt
gtgtCACATCAAGGGGGAGTCATGATTGGCCCATAAATGTGAGGCTGTTC
ATATTTTATAGTTCCATTTTAATCCTTTTGTAATTGACAGGTTTTAGCAG
ACGCAAAACCCCTGCGGCAAGCTGGAGGTTCTCACGAGTTACCATTCGAA
TATGTCGCACAAGAAGAAGATAAACATCATCCAACGAGTGAATCACATGG
aatggaaaacgaaagtgaaagtagtcaACAAAGACACAAGTTCCATGGAG
AGGACGAGAAGATTGGAAACGAGCCAATGACGCGTGAAGAAATGACAGAG
GAgaaatataaaaatgttttcaataatGAGGATGGCACAAAGAATGACCG
ATCTAAAGGTAGGAATATTCTTTACTTAAACAGCCCAGGAGGGATAGAAT
TTGCTTTCAGCCAATAAAATCACAAGAAACTTGAATGAAGGGGAGGAGTG
TGTAGCCATTGTAAAATCAGGGTCTACATAAAGTGTATCCTCTGAAGTTT
GGCAAGGCTACGTGTCTTAGAGGGAGATCCGTATTAAGAATTGAAATGTG
ATTGTTATGATGGCGAAATTTATGGAAGTTCgaatattttttaagaaact
tctAGACTCCTTTATAGATACTCTTAAATTGTCATTCAAGTATCTTCGTA
TTTGCGAAAAAGAATGTGCTACTCTTTTTTTTCCTGGTTAAGAGAGATAA
GCCAGACTACACCTTTCATTTTCATAGGAGGCGAGCAGAGTAAGGACgga
aagaaagaagatggaaagaagAATGGTGAACTGTTCACATCTGAAGATAA
GaacaaagagaaagaaaaagataatgAAGAAGATGATGACAAATACAAAA
GTTTCCAAGGTAACGCGATGCGTTGTAATGAAAGTTTTTCAAGTGATTCG
AAAGCTTTTGTATTGTCAATTTCTACCAGAGATTCGATTGggccattttt
caaaatctagacATGTTCCCTACTTTCTAAAATTCGAATACTTAAGAAAG
ATGGTTGAAAGCCGATTTAAGGAAGAGTTGATAACTCTATTACTTAATAG
Atactcgaattagagagagttgagtgaaatgattttcaaattcaacaagt
AACACTATTCAAACAGGTTTCAAATTCCGATACGGCCCAACCGAGTCATT
CAACAAACAACAAGACGATAAACCTAAAAAGCTaaagaaaggaaagaaaa
tataCCCCGACGATGATAGCGCTCCTCAACAATCTATCAAGACAAAACCG
AGTGTGGGCGGAGCCAATTTTGGTGTTAGTGACTTCACTGGTACTGGAGG
CGGGGTTGGTGGAAATACGGGCGGAATGGAATCAGACGCCCCTTCAAAAG
TGAGCAGCCACCACGAACACGAAGAGGGGACGGCACCTTCACCTTTTGAG
CCAGAGGAGAAATTATCCTATCACCCAACCAAAGAACCTGGTTACAGTAG
ATTCAAAGACGATCAAAATCGTGAAGAAGGTATCATATCATTCCTACCTG
CTTATGAatgataatctttttaaagtaaaaCGTTGTAAACGCATCCTTCT
TTTTTAACCACCCTCTCGAATAAACGCCACTCCTTTGAGGACAAATTTTT
AATGAGCACCCCTCCCTCAATTGAACCCTCCTTCGAATAAATGACTCCCT
TTAGGTCGATTTTAAGTCGATGAAGTTAACCTCTTGAAAAAAAACGGATG
GAGGAGATGACCGAAGAAAATACACTaaatctattttcaacattatagaA
AGACAGCCGCTAAGCCATCAACAAAATGGAATGGACAAGAACACTTCACC
TTACCATAGCCATGAAATCCAAGAGAAACACGGCGAAAATGAACACCAAT
CAGTCACAAACAGAGAATCGTTCGCAAGTGCTCCCAATGAGTCGGAAGCT
TTCAGTATAGGTATACAGCGTAATTGATTAATGTGTCTTCAACAGACTAT
CTTAAGTTTActtttaaaatcgaaataattCTCCTTATCCATACTGCTGC
TAATGAAAGCCGAACTTCCGGTATTCCAGTATTCATCGGAACATTTTTGA
CCGGTAcctgaaaaatcttttcatgAAAAACCAGTAcagtattttggtat
ttttgtacCCTTGAAAGCCACTTTTGATGAAATTCGATTTCTCTCCCTTT
TACACAGGTAAACACCATCACGTGAAAGGCTATGCAGATTCTCACGCAAC
ATTCAGGATTCACAATAAAAAAGTCGAAGATATCACCTCAAAGAAATCAA
GCCCAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045716XLOC_045716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073617-exon-scaffold_96-1491911889:104493..104531TCONS_00073617-exon-scaffold_96-1491911889:104493..104531Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1510915933:104493..104531TCONS_00073617-exon-scaffold_96-1510915933:104493..104531Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1575043694:104493..104531TCONS_00073617-exon-scaffold_96-1575043694:104493..104531Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1491911889:104799..104940TCONS_00073617-exon-scaffold_96-1491911889:104799..104940Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1510915933:104799..104940TCONS_00073617-exon-scaffold_96-1510915933:104799..104940Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1575043694:104799..104940TCONS_00073617-exon-scaffold_96-1575043694:104799..104940Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1491911889:105250..105472TCONS_00073617-exon-scaffold_96-1491911889:105250..105472Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1510915933:105250..105472TCONS_00073617-exon-scaffold_96-1510915933:105250..105472Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1575043694:105250..105472TCONS_00073617-exon-scaffold_96-1575043694:105250..105472Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1491911889:105683..105950TCONS_00073617-exon-scaffold_96-1491911889:105683..105950Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1510915933:105683..105950TCONS_00073617-exon-scaffold_96-1510915933:105683..105950Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1575043694:105683..105950TCONS_00073617-exon-scaffold_96-1575043694:105683..105950Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1491911889:106320..106451TCONS_00073617-exon-scaffold_96-1491911889:106320..106451Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1510915933:106320..106451TCONS_00073617-exon-scaffold_96-1510915933:106320..106451Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1575043694:106320..106451TCONS_00073617-exon-scaffold_96-1575043694:106320..106451Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1491911889:106709..107071TCONS_00073617-exon-scaffold_96-1491911889:106709..107071Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1510915933:106709..107071TCONS_00073617-exon-scaffold_96-1510915933:106709..107071Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1575043694:106709..107071TCONS_00073617-exon-scaffold_96-1575043694:106709..107071Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1491911889:107341..107502TCONS_00073617-exon-scaffold_96-1491911889:107341..107502Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1510915933:107341..107502TCONS_00073617-exon-scaffold_96-1510915933:107341..107502Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1575043694:107341..107502TCONS_00073617-exon-scaffold_96-1575043694:107341..107502Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1491911889:107750..107851TCONS_00073617-exon-scaffold_96-1491911889:107750..107851Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1510915933:107750..107851TCONS_00073617-exon-scaffold_96-1510915933:107750..107851Clytia hemisphaericaexon
TCONS_00073617-exon-scaffold_96-1575043694:107750..107851TCONS_00073617-exon-scaffold_96-1575043694:107750..107851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_96supercontigscaffold_96:104493..107851 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0283113	0	0	0	0.0111545	1.15612	1.10608	0.528032	0.285256	0.365025	0.581033	1.03161	2.25083	0	3.01288	0.415043	0.98114	0	0.0322951	0.730381	0	0.37378	0.372785	2.02827	2.32643	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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