TCONS_00073610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073610
Unique NameTCONS_00073610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073610 ID=TCONS_00073610|Name=TCONS_00073610|organism=Clytia hemisphaerica|type=transcript|length=570bp
AAATAAAGGGCAGAATCGTCAATGGACCCATAATTAGACGCACCCgaaaa
ttcacgacaaaaggaATAGAGCGCTCCTCTCTTGATTCCAGACGTCTTGA
AGAAATCAGTGGTGTCTTCCGTGGTCTACGGAGATACGTCAAAACCTNCT
TGAAGAAATCAGTGGTGTCTTCCGTGGTCTACGGAGATACGTCAAAACCG
TGGGTATTGAAGACAATACAGGAAGCGTCGAATGTTCTGCTGGTACTTCA
ATCGATTCCGAATCTCCATTTCTTTACGAAGAATATTTTGAGGTGGGCTT
GGCAATAAAGGTGAAATGGGTGCAAAAAGATCTTGGAACTGGGTGGAAGC
CTGGCTGGTATTCTGCTGTTGTCCAATCATGTGATATTCAAAACGACACC
ATCAACATTATTTACAATTTAGAACCTAACGTGATATACTCAGTGGAAAT
ATCCCCTTGCATTTCGTCTGGCAGAATCAAATTAGCTGCGAAATGATTTA
ATTAACTAGCCAATGTATACTTTTCCCTATATTGCATCCATTTTCCAGTC
CCCACCTAGCCATAAGTAct
Run BLAST on NCBI

protein sequence of TCONS_00073610-protein

>TCONS_00073610-protein ID=TCONS_00073610-protein|Name=TCONS_00073610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
IKGRIVNGPIIRRTRKFTTKGIERSSLDSRRLEEISGVFRGLRRYVKTXL
KKSVVSSVVYGDTSKPWVLKTIQEASNVLLVLQSIPNLHFFTKNILRWAW
Q
Run BLAST on NCBI

transcript from alignment at scaffold_95:199406..199975

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073610 ID=TCONS_00073610|Name=TCONS_00073610|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at scaffold_95:199406..199975 (Clytia hemisphaerica)
agTACTTATGGCTAGGTGGGGACTGGAAAATGGATGCAATATAGGGAAAA
GTATACATTGGCTAGTTAATTAAATCATTTCGCAGCTAATTTGATTCTGC
CAGACGAAATGCAAGGGGATATTTCCACTGAGTATATCACGTTAGGTTCT
AAATTGTAAATAATGTTGATGGTGTCGTTTTGAATATCACATGATTGGAC
AACAGCAGAATACCAGCCAGGCTTCCACCCAGTTCCAAGATCTTTTTGCA
CCCATTTCACCTTTATTGCCAAGCCCACCTCAAAATATTCTTCGTAAAGA
AATGGAGATTCGGAATCGATTGAAGTACCAGCAGAACATTCGACGCTTCC
TGTATTGTCTTCAATACCCACGGTTTTGACGTATCTCCGTAGACCACGGA
AGACACCACTGATTTCTTCAAGNAGGTTTTGACGTATCTCCGTAGACCAC
GGAAGACACCACTGATTTCTTCAAGACGTCTGGAATCAAGAGAGGAGCGC
TCTATtccttttgtcgtgaattttcGGGTGCGTCTAATTATGGGTCCATT
GACGATTCTGCCCTTTATTT

Coding sequence (CDS) from alignment at scaffold_95:199406..199975

>TCONS_00073610 ID=TCONS_00073610|Name=TCONS_00073610|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_95:199406..199975 (Clytia hemisphaerica)
TTATTGCCAAGCCCACCTCAAAATATTCTTCGTAAAGAAATGGAGATTCG
GAATCGATTGAAGTACCAGCAGAACATTCGACGCTTCCTGTATTGTCTTC
AATACCCACGGTTTTGACGTATCTCCGTAGACCACGGAAGACACCACTGA
TTTCTTCAAGNAGGTTTTGACGTATCTCCGTAGACCACGGAAGACACCAC
TGATTTCTTCAAGACGTCTGGAATCAAGAGAGGAGCGCTCTATtcctttt
gtcgtgaattttcGGGTGCGTCTAATTATGGGTCCATTGACGATTCTGCC
CTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045710XLOC_045710Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073610-proteinTCONS_00073610-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073610-exon-scaffold_95-1491911889:199406..199975TCONS_00073610-exon-scaffold_95-1491911889:199406..199975Clytia hemisphaericaexon
TCONS_00073610-exon-scaffold_95-1510915933:199406..199975TCONS_00073610-exon-scaffold_95-1510915933:199406..199975Clytia hemisphaericaexon
TCONS_00073610-exon-scaffold_95-1575043694:199406..199975TCONS_00073610-exon-scaffold_95-1575043694:199406..199975Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_95supercontigscaffold_95:199406..199975 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02946	1.04225	1.34708	0.435455	0.265062	0.523639	0.252699	0.118287	1.02411	1.00734	0.873902	0.80938	0.944654	1.5413	4.42132	3.01557	2.19579	1.01054	0.41788	0.327961	0.190038	0.278082	0.150611	0.256463	0.316545	0.376678	0	0	0.218158	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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