Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073580 ID=TCONS_00073580|Name=TCONS_00073580|organism=Clytia hemisphaerica|type=transcript|length=1190bp
gtgttgtCATGTTTTAATGGTAAAAAGATAAAATTGGTGTTGATTTTTCC
AAGATATggatttttctcgaaaaaaaacaaggaaacctAGATTTTCTGAG
ATATTAGTTAGAGAATTGAATCAACAAAATATTATCTTGATTGAGCGAAA
CAATTATTTAGAAGATGAAAATCAGGCTCTAAAAGGCCAGAACACAGAGC
TGAAGAAAAGGTTACGCGAAGAAGAAAACGATGTATGTGATGATTTAGTG
GGGAGCAGAGGGAGTGAGGCTTCTGATCTAGAAGAAATGTTAGATGAATC
GGTTGAGAGCGACGTAAGCGACGAGGCCACCGATCCAGCGCCNCTAGAAG
AAATGTTAGATGAATCGGTTGAGAGCGACGTAAGCGACGAGGCCACCGAT
CCAGCGCCTTCACATGAAAAAAGCACCATCAGTGTAGAGAAAAGATTAAT
GTGGGGTGCAAAAAGGTATAAATTCATGAAAGGAAAAACCATTCTGAATA
ATAACTCTTCTTATGGAGATTGGTATGAATGTATTACAAGAGATATGGAA
GACGAAAAACAGTACGGTGATGATGATGTTTGCTTCATGAAAAAAGAGAT
AANCTTCACATGAAAAAAGCACCATCAGTGTAGAGAAAAGATTAATGTGG
GGTGCAAAAAGGTATAAATTCATGAAAGGAAAAACCATTCTGAATTATAA
CTCTTCTTATGGAGATTGGTATGAATGTATTACAAGAGATATGGAAGACG
AAAAACAGTACGGTGATGATGATGTTTGCTTCATAAAAAAAGAGATAGNA
TAACTCTTCTTATGGAGATTGGTATGAATGTATTACAAGAGATATGGAAG
ACGAAAAACAGTACGGTGATGATGATGTTTGCTTCATGAAAAAAGAGATA
AGAGCTGGTCAAACTATTCATGCCGTGCTTACTCAGGATCCAAACGAGTT
TACGAAAATCAGAACATATGAAGATGAGGAAAGCGAATTTCCGTCCGAAA
CCAAATCGAAACTACGACCAAGCACAGATAACGCAAATATTTTCGTCATT
AACGGTAAAGGGAATAAGGATGCACAACGGATGAAATTTTATGTTCTGTC
ACCCATGTCACCCATGTCACGTTTCGAGATGAGACAGTCAAACACTGTGT
TTTACAATGAAAAGAATGATAAAGTCGAAAGACATTCTTG Run BLAST on NCBI protein sequence of TCONS_00073580-protein >TCONS_00073580-protein ID=TCONS_00073580-protein|Name=TCONS_00073580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MDFSRKKTRKPRFSEILVRELNQQNIILIERNNYLEDENQALKGQNTELK
KRLREEENDVCDDLVGSRGSEASDLEEMLDESVESDVSDEATDPAXLEEM
LDESVESDVSDEATDPAPSHEKSTISVEKRLMWGAKRYKFMKGKTILNNN
SSYGDWYECITRDMEDEKQYGDDDVCFMKKEIXFT Run BLAST on NCBI transcript from alignment at scaffold_94:333636..334825 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073580 ID=TCONS_00073580|Name=TCONS_00073580|organism=Clytia hemisphaerica|type=transcript|length=1190bp|location=Sequence derived from alignment at scaffold_94:333636..334825 (Clytia hemisphaerica)
CAAGAATGTCTTTCGACTTTATCATTCTTTTCATTGTAAAACACAGTGTT
TGACTGTCTCATCTCGAAACGTGACATGGGTGACATGGGTGACAGAACAT
AAAATTTCATCCGTTGTGCATCCTTATTCCCTTTACCGTTAATGACGAAA
ATATTTGCGTTATCTGTGCTTGGTCGTAGTTTCGATTTGGTTTCGGACGG
AAATTCGCTTTCCTCATCTTCATATGTTCTGATTTTCGTAAACTCGTTTG
GATCCTGAGTAAGCACGGCATGAATAGTTTGACCAGCTCTTATCTCTTTT
TTCATGAAGCAAACATCATCATCACCGTACTGTTTTTCGTCTTCCATATC
TCTTGTAATACATTCATACCAATCTCCATAAGAAGAGTTATNCTATCTCT
TTTTTTATGAAGCAAACATCATCATCACCGTACTGTTTTTCGTCTTCCAT
ATCTCTTGTAATACATTCATACCAATCTCCATAAGAAGAGTTATAATTCA
GAATGGTTTTTCCTTTCATGAATTTATACCTTTTTGCACCCCACATTAAT
CTTTTCTCTACACTGATGGTGCTTTTTTCATGTGAAGNTTATCTCTTTTT
TCATGAAGCAAACATCATCATCACCGTACTGTTTTTCGTCTTCCATATCT
CTTGTAATACATTCATACCAATCTCCATAAGAAGAGTTATTATTCAGAAT
GGTTTTTCCTTTCATGAATTTATACCTTTTTGCACCCCACATTAATCTTT
TCTCTACACTGATGGTGCTTTTTTCATGTGAAGGCGCTGGATCGGTGGCC
TCGTCGCTTACGTCGCTCTCAACCGATTCATCTAACATTTCTTCTAGNGG
CGCTGGATCGGTGGCCTCGTCGCTTACGTCGCTCTCAACCGATTCATCTA
ACATTTCTTCTAGATCAGAAGCCTCACTCCCTCTGCTCCCCACTAAATCA
TCACATACATCGTTTTCTTCTTCGCGTAACCTTTTCTTCAGCTCTGTGTT
CTGGCCTTTTAGAGCCTGATTTTCATCTTCTAAATAATTGTTTCGCTCAA
TCAAGATAATATTTTGTTGATTCAATTCTCTAACTAATATCTCAGAAAAT
CTaggtttccttgttttttttcgagaaaaatccATATCTTGGAAAAATCA
ACACCAATTTTATCTTTTTACCATTAAAACATGacaacac Coding sequence (CDS) from alignment at scaffold_94:333636..334825 >TCONS_00073580 ID=TCONS_00073580|Name=TCONS_00073580|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at scaffold_94:333636..334825 (Clytia hemisphaerica)
TCATGTGAAGNTTATCTCTTTTTTCATGAAGCAAACATCATCATCACCGT
ACTGTTTTTCGTCTTCCATATCTCTTGTAATACATTCATACCAATCTCCA
TAAGAAGAGTTATTATTCAGAATGGTTTTTCCTTTCATGAATTTATACCT
TTTTGCACCCCACATTAATCTTTTCTCTACACTGATGGTGCTTTTTTCAT
GTGAAGGCGCTGGATCGGTGGCCTCGTCGCTTACGTCGCTCTCAACCGAT
TCATCTAACATTTCTTCTAGNGGCGCTGGATCGGTGGCCTCGTCGCTTAC
GTCGCTCTCAACCGATTCATCTAACATTTCTTCTAGATCAGAAGCCTCAC
TCCCTCTGCTCCCCACTAAATCATCACATACATCGTTTTCTTCTTCGCGT
AACCTTTTCTTCAGCTCTGTGTTCTGGCCTTTTAGAGCCTGATTTTCATC
TTCTAAATAATTGTTTCGCTCAATCAAGATAATATTTTGTTGATTCAATT
CTCTAACTAATATCTCAGAAAATCTaggtttccttgttttttttcgagaa
aaatccAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073580-exon-scaffold_94-1491911889:333636..334825 | TCONS_00073580-exon-scaffold_94-1491911889:333636..334825 | Clytia hemisphaerica | exon |
| TCONS_00073580-exon-scaffold_94-1510915933:333636..334825 | TCONS_00073580-exon-scaffold_94-1510915933:333636..334825 | Clytia hemisphaerica | exon |
| TCONS_00073580-exon-scaffold_94-1575043694:333636..334825 | TCONS_00073580-exon-scaffold_94-1575043694:333636..334825 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_94 | supercontig | scaffold_94:333636..334825 . |
Blast
The following BLAST results are available for this feature:
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